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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    118601 6buw:Y4 (3.5) BS02 ZN ? GO:0003735 ... Q5SJE1 30476222
    118602 6buw:Y5 (3.5) BS02 ZN ? GO:0003735 ... P80339 30476222
    118603 6buw:Y9 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    118604 6buw:YD (3.5) BS02 MG ? GO:0002181 ... P60405 30476222
    118605 6buw:YD (3.5) BS03 MG ? GO:0002181 ... P60405 30476222
    118606 6buw:YE (3.5) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    118607 6buw:YX (3.5) BS02 MG ? GO:0000027 ... Q5SHP0 30476222
    118608 6buw:YX (3.5) BS03 MG ? GO:0000027 ... Q5SHP0 30476222
    118609 6buw:YY (3.5) BS02 ZN ? GO:0003723 ... Q5SHP9 30476222
    118610 6buw:YY (3.5) BS03 MG ? GO:0003723 ... Q5SHP9 30476222
    118611 6bux:A (1.856) BS02 ZN 3.5.4.38 GO:0003824 ... Q9HC16 29941968
    118612 6buy:A (2.1) BS02 ZN 3.4.11.2 GO:0001525 ... P15145 28465619
    118613 6bv0:A (1.86) BS02 ZN 3.4.11.2 GO:0001525 ... P15145 28465619
    118614 6bv1:A (2.0) BS02 ZN 3.4.11.2 GO:0001525 ... P15145 28465619
    118615 6bv2:A (2.14) BS02 ZN 3.4.11.2 GO:0001525 ... P15145 28465619
    118616 6bv3:A (2.2) BS02 ZN 3.4.11.2 GO:0001525 ... P15145 28465619
    118617 6bv4:A (2.02) BS02 ZN 3.4.11.2 GO:0001525 ... P15145 28465619
    118618 6bv5:A (1.79) BS02 ZN 3.1.26.5 N/A Q66GI4 N/A
    118619 6bv6:A (2.2) BS04 ZN 3.1.26.5 N/A Q66GI4 N/A
    118620 6bv8:A (2.1) BS02 ZN 3.1.26.5 N/A Q66GI4 N/A
    118621 6bv9:A (2.1) BS04 ZN 3.1.26.5 N/A Q66GI4 N/A
    118622 6bvd:A (2.09) BS01 CA ? GO:0004222 ... A0A384E125 29688327
    118623 6bvd:A (2.09) BS02 ZN ? GO:0004222 ... A0A384E125 29688327
    118624 6bvd:B (2.09) BS01 CA ? GO:0004222 ... A0A384E125 29688327
    118625 6bvd:B (2.09) BS02 ZN ? GO:0004222 ... A0A384E125 29688327
    118626 6bvh:A (1.927) BS02 CA 3.4.21.4 GO:0004175 ... P00760 30668585
    118627 6bvi:A (1.746) BS02 MG 3.6.5.2 GO:0003924 ... P01112 29856609
    118628 6bvj:A (1.747) BS02 MG 3.6.5.2 GO:0003924 ... P01112 29856609
    118629 6bvk:A (1.799) BS02 MG 3.6.5.2 GO:0003924 ... P01112 29856609
    118630 6bvl:A (1.748) BS02 MG 3.6.5.2 GO:0003924 ... P01112 29856609
    118631 6bvm:A (1.796) BS02 MG 3.6.5.2 GO:0003924 ... P01112 29856609
    118632 6bvp:A (1.903) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    118633 6bvp:A (1.903) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    118634 6bvq:A (2.084) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    118635 6bvq:A (2.084) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    118636 6bvr:A (1.9) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    118637 6bvr:A (1.9) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    118638 6bvs:A (2.318) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    118639 6bvs:A (2.318) BS03 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    118640 6bwh:A (2.18) BS02 MG 2.7.7.105 GO:0005525 ... P9WP83 30952857
    118641 6bwh:A (2.18) BS03 MG 2.7.7.105 GO:0005525 ... P9WP83 30952857
    118642 6bwh:B (2.18) BS02 MG 2.7.7.105 GO:0005525 ... P9WP83 30952857
    118643 6bwh:B (2.18) BS03 MG 2.7.7.105 GO:0005525 ... P9WP83 30952857
    118644 6bwh:C (2.18) BS02 MG 2.7.7.105 GO:0005525 ... P9WP83 30952857
    118645 6bwh:C (2.18) BS03 MG 2.7.7.105 GO:0005525 ... P9WP83 30952857
    118646 6bwn:A (2.94) BS01 CA ? GO:0005509 ... Q99PJ1 32963095
    118647 6bwn:A (2.94) BS02 CA ? GO:0005509 ... Q99PJ1 32963095
    118648 6bwy:A (2.9) BS02 ZN 3.5.4.-
    3.5.4.38    		 GO:0000723 ... O13988
    Q9HC16    		 29596531
    118649 6bwy:B (2.9) BS03 ZN 3.5.4.-
    3.5.4.38    		 GO:0000723 ... O13988
    Q9HC16    		 29596531
    118650 6bwy:E (2.9) BS02 ZN 3.5.4.-
    3.5.4.38    		 GO:0000723 ... O13988
    Q9HC16    		 29596531
    118651 6bwy:G (2.9) BS02 ZN 3.5.4.-
    3.5.4.38    		 GO:0000723 ... O13988
    Q9HC16    		 29596531
    118652 6bx7:A (2.85) BS01 CA ? GO:0005509 ... Q08174 31583286
    118653 6bx7:A (2.85) BS02 CA ? GO:0005509 ... Q08174 31583286
    118654 6bx7:A (2.85) BS03 CA ? GO:0005509 ... Q08174 31583286
    118655 6bx7:A (2.85) BS04 CA ? GO:0005509 ... Q08174 31583286
    118656 6bx7:A (2.85) BS05 CA ? GO:0005509 ... Q08174 31583286
    118657 6bx7:A (2.85) BS06 CA ? GO:0005509 ... Q08174 31583286
    118658 6bx7:A (2.85) BS07 CA ? GO:0005509 ... Q08174 31583286
    118659 6bx7:A (2.85) BS08 CA ? GO:0005509 ... Q08174 31583286
    118660 6bx7:A (2.85) BS09 CA ? GO:0005509 ... Q08174 31583286
    118661 6bx7:A (2.85) BS10 CA ? GO:0005509 ... Q08174 31583286
    118662 6bx7:A (2.85) BS11 CA ? GO:0005509 ... Q08174 31583286
    118663 6bxb:A (2.39) BS01 CA ? N/A P05106
    P20701    		 30018079
    118664 6bxb:B (2.39) BS01 MG ? N/A P05106
    P20701    		 30018079
    118665 6bxf:A (3.2) BS01 CA ? N/A P05106
    P20701    		 30018079
    118666 6bxf:B (3.2) BS01 MG ? N/A P05106
    P20701    		 30018079
    118667 6bxj:A (2.092) BS01 MG ? N/A P05106
    P20701    		 30209215
    118668 6bxu:A (3.79) BS01 CA ? GO:0005509 ... Q99PJ1 32963095
    118669 6bxu:A (3.79) BS02 CA ? GO:0005509 ... Q99PJ1 32963095
    118670 6bxu:A (3.79) BS03 CA ? GO:0005509 ... Q99PJ1 32963095
    118671 6bxu:A (3.79) BS04 CA ? GO:0005509 ... Q99PJ1 32963095
    118672 6bxu:A (3.79) BS05 CA ? GO:0005509 ... Q99PJ1 32963095
    118673 6bxu:B (3.79) BS01 CA ? GO:0005509 ... Q99PJ1 32963095
    118674 6bxu:B (3.79) BS02 CA ? GO:0005509 ... Q99PJ1 32963095
    118675 6bxu:B (3.79) BS03 CA ? GO:0005509 ... Q99PJ1 32963095
    118676 6bxu:B (3.79) BS04 CA ? GO:0005509 ... Q99PJ1 32963095
    118677 6bxu:B (3.79) BS05 CA ? GO:0005509 ... Q99PJ1 32963095
    118678 6bxz:A (2.09) BS01 CA ? GO:0005509 ... F1SD06 30527337
    118679 6bxz:A (2.09) BS02 CA ? GO:0005509 ... F1SD06 30527337
    118680 6bxz:A (2.09) BS03 CA ? GO:0005509 ... F1SD06 30527337
    118681 6bxz:C (2.09) BS01 CA ? GO:0005509 ... F1SD06 30527337
    118682 6bxz:C (2.09) BS02 CA ? GO:0005509 ... F1SD06 30527337
    118683 6bxz:C (2.09) BS03 CA ? GO:0005509 ... F1SD06 30527337
    118684 6by1:AN (3.94) BS02 MG ? GO:0000028 ... P0AG59 30552154
    118685 6by1:C0 (3.94) BS01 ZN ? GO:0003735 ... P0A7M9 30552154
    118686 6by1:C4 (3.94) BS02 MG ? GO:0002181 ... P0A7Q1 30552154
    118687 6by1:C6 (3.94) BS02 ZN ? GO:0002181 ... P0A7Q6 30552154
    118688 6by1:D0 (3.94) BS01 ZN ? GO:0003735 ... P0A7M9 30552154
    118689 6by1:D6 (3.94) BS02 ZN ? GO:0002181 ... P0A7Q6 30552154
    118690 6byp:A (1.9) BS01 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    118691 6byp:A (1.9) BS02 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    118692 6byp:B (1.9) BS01 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    118693 6byp:B (1.9) BS02 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    118694 6byr:A (3.661) BS02 MG 2.7.11.11 GO:0000287 ... P17612
    P25685    		 30905674
    118695 6byr:C (3.661) BS02 MG 2.7.11.11 GO:0000287 ... P17612
    P25685    		 30905674
    118696 6byt:A (2.2) BS04 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    118697 6byt:A (2.2) BS05 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    118698 6byt:B (2.2) BS03 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    118699 6byt:B (2.2) BS04 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    118700 6byu:D (3.6) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    118701 6byu:D (3.6) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    118702 6byu:D (3.6) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    118703 6byu:J (3.6) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    118704 6byu:J (3.6) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    118705 6byu:J (3.6) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    118706 6byv:A (-1.00) BS01 CA ? N/A P98155 29965730
    118707 6byv:A (-1.00) BS02 CA ? N/A P98155 29965730
    118708 6byv:A (-1.00) BS03 CA ? N/A P98155 29965730
    118709 6byw:A (2.05) BS01 MG ? GO:0046872 ... A0A161XU12 29381339
    118710 6byw:B (2.05) BS01 MG ? GO:0046872 ... A0A161XU12 29381339
    118711 6byw:C (2.05) BS01 MG ? GO:0046872 ... A0A161XU12 29381339
    118712 6byw:D (2.05) BS01 MG ? GO:0046872 ... A0A161XU12 29381339
    118713 6byx:A (2.208) BS03 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    118714 6byx:A (2.208) BS04 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    118715 6byx:B (2.208) BS01 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    118716 6byx:B (2.208) BS02 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    118717 6bz3:A (2.497) BS03 CA 2.7.10.2 GO:0004713 ... P34152 29479476
    118718 6bz3:C (2.497) BS03 CA 2.7.10.2 GO:0004713 ... P34152 29479476
    118719 6bz6:QC (3.18) BS02 MG ? GO:0003676 ... P80372 30476222
    118720 6bz6:QJ (3.18) BS02 MG ? GO:0000049 ... Q5SHN7 30476222
    118721 6bz6:QM (3.18) BS02 MG ? GO:0000049 ... P80377 30476222
    118722 6bz6:QN (3.18) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    118723 6bz6:R4 (3.18) BS02 ZN ? GO:0003735 ... Q5SJE1 30476222
    118724 6bz6:R5 (3.18) BS02 ZN ? GO:0003735 ... P80339 30476222
    118725 6bz6:R6 (3.18) BS02 ZN ? GO:0000049 ... P35871 30476222
    118726 6bz6:R9 (3.18) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    118727 6bz6:RE (3.18) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    118728 6bz6:RE (3.18) BS03 MG ? GO:0003735 ... Q5SHN8 30476222
    118729 6bz6:RP (3.18) BS02 MG ? GO:0003735 ... Q5SHQ7 30476222
    118730 6bz6:RQ (3.18) BS03 MG ? GO:0000049 ... P60489 30476222
    118731 6bz6:RU (3.18) BS02 MG ? GO:0000027 ... P60491 30476222
    118732 6bz6:RY (3.18) BS02 ZN ? GO:0003723 ... Q5SHP9 30476222
    118733 6bz6:XE (3.18) BS02 MG ? GO:0003723 ... Q5SHQ5 30476222
    118734 6bz6:XK (3.18) BS02 MG ? GO:0003735 ... P80376 30476222
    118735 6bz6:XM (3.18) BS02 MG ? GO:0000049 ... P80377 30476222
    118736 6bz6:XM (3.18) BS03 MG ? GO:0000049 ... P80377 30476222
    118737 6bz6:XM (3.18) BS04 MG ? GO:0000049 ... P80377 30476222
    118738 6bz6:XN (3.18) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    118739 6bz6:XQ (3.18) BS02 MG ? GO:0003735 ... P0DOY7 30476222
    118740 6bz6:Y4 (3.18) BS02 ZN ? GO:0003735 ... Q5SJE1 30476222
    118741 6bz6:Y5 (3.18) BS02 ZN ? GO:0003735 ... P80339 30476222
    118742 6bz6:Y6 (3.18) BS02 ZN ? GO:0000049 ... P35871 30476222
    118743 6bz6:Y9 (3.18) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    118744 6bz6:YD (3.18) BS03 MG ? GO:0002181 ... P60405 30476222
    118745 6bz6:YE (3.18) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    118746 6bz6:YP (3.18) BS02 MG ? GO:0003735 ... Q5SHQ7 30476222
    118747 6bz6:YQ (3.18) BS03 MG ? GO:0000049 ... P60489 30476222
    118748 6bz6:YX (3.18) BS02 MG ? GO:0000027 ... Q5SHP0 30476222
    118749 6bz6:YY (3.18) BS02 MG ? GO:0003723 ... Q5SHP9 30476222
    118750 6bz6:YY (3.18) BS03 ZN ? GO:0003723 ... Q5SHP9 30476222
    118751 6bz7:QN (3.68) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    118752 6bz7:R5 (3.68) BS02 ZN ? GO:0003735 ... P80339 30476222
    118753 6bz7:R6 (3.68) BS02 ZN ? GO:0000049 ... P35871 30476222
    118754 6bz7:R9 (3.68) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    118755 6bz7:RE (3.68) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    118756 6bz7:RF (3.68) BS02 MG ? GO:0003735 ... Q5SHN9 30476222
    118757 6bz7:RQ (3.68) BS03 MG ? GO:0000049 ... P60489 30476222
    118758 6bz7:RU (3.68) BS02 MG ? GO:0000027 ... P60491 30476222
    118759 6bz7:RY (3.68) BS02 ZN ? GO:0003723 ... Q5SHP9 30476222
    118760 6bz7:XE (3.68) BS02 MG ? GO:0003723 ... Q5SHQ5 30476222
    118761 6bz7:XK (3.68) BS02 MG ? GO:0003735 ... P80376 30476222
    118762 6bz7:XM (3.68) BS03 MG ? GO:0000049 ... P80377 30476222
    118763 6bz7:XM (3.68) BS04 MG ? GO:0000049 ... P80377 30476222
    118764 6bz7:XM (3.68) BS05 MG ? GO:0000049 ... P80377 30476222
    118765 6bz7:XN (3.68) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    118766 6bz7:XQ (3.68) BS02 MG ? GO:0003735 ... P0DOY7 30476222
    118767 6bz7:Y5 (3.68) BS02 ZN ? GO:0003735 ... P80339 30476222
    118768 6bz7:Y6 (3.68) BS02 ZN ? GO:0000049 ... P35871 30476222
    118769 6bz7:Y9 (3.68) BS02 MG ? GO:0003735 ... Q5SHR2 30476222
    118770 6bz7:YD (3.68) BS03 MG ? GO:0002181 ... P60405 30476222
    118771 6bz7:YE (3.68) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    118772 6bz7:YP (3.68) BS02 MG ? GO:0003735 ... Q5SHQ7 30476222
    118773 6bz7:YX (3.68) BS02 MG ? GO:0000027 ... Q5SHP0 30476222
    118774 6bz7:YY (3.68) BS02 MG ? GO:0003723 ... Q5SHP9 30476222
    118775 6bz8:QC (3.74) BS02 MG ? GO:0003676 ... P80372 30476222
    118776 6bz8:QF (3.74) BS02 MG ? GO:0003735 ... Q5SLP8 30476222
    118777 6bz8:QJ (3.74) BS03 MG ? GO:0000049 ... Q5SHN7 30476222
    118778 6bz8:QM (3.74) BS02 MG ? GO:0000049 ... P80377 30476222
    118779 6bz8:QN (3.74) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    118780 6bz8:R4 (3.74) BS02 ZN ? GO:0003735 ... Q5SJE1 30476222
    118781 6bz8:R5 (3.74) BS02 ZN ? GO:0003735 ... P80339 30476222
    118782 6bz8:R6 (3.74) BS02 ZN ? GO:0000049 ... P35871 30476222
    118783 6bz8:R9 (3.74) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    118784 6bz8:RD (3.74) BS03 MG ? GO:0002181 ... P60405 30476222
    118785 6bz8:RE (3.74) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    118786 6bz8:RP (3.74) BS02 MG ? GO:0003735 ... Q5SHQ7 30476222
    118787 6bz8:RQ (3.74) BS03 MG ? GO:0000049 ... P60489 30476222
    118788 6bz8:RU (3.74) BS02 MG ? GO:0000027 ... P60491 30476222
    118789 6bz8:RY (3.74) BS02 ZN ? GO:0003723 ... Q5SHP9 30476222
    118790 6bz8:XE (3.74) BS02 MG ? GO:0003723 ... Q5SHQ5 30476222
    118791 6bz8:XM (3.74) BS02 MG ? GO:0000049 ... P80377 30476222
    118792 6bz8:XM (3.74) BS03 MG ? GO:0000049 ... P80377 30476222
    118793 6bz8:XN (3.74) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    118794 6bz8:XQ (3.74) BS02 MG ? GO:0003735 ... P0DOY7 30476222
    118795 6bz8:Y4 (3.74) BS03 ZN ? GO:0003735 ... Q5SJE1 30476222
    118796 6bz8:Y5 (3.74) BS02 MG ? GO:0003735 ... P80339 30476222
    118797 6bz8:Y5 (3.74) BS03 ZN ? GO:0003735 ... P80339 30476222
    118798 6bz8:Y6 (3.74) BS02 ZN ? GO:0000049 ... P35871 30476222
    118799 6bz8:Y9 (3.74) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    118800 6bz8:YD (3.74) BS03 MG ? GO:0002181 ... P60405 30476222
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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