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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11601 1pif:A (2.3) BS01 CA 3.2.1.1 GO:0003824 ... P00690 8757803
    11602 1pig:A (2.2) BS11 CA 3.2.1.1 GO:0003824 ... P00690 8757803
    11603 1pim:A (2.0) BS01 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    11604 1pim:A (2.0) BS02 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    11605 1pim:B (2.0) BS01 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    11606 1pim:B (2.0) BS02 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    11607 1pir:A (-1.00) BS01 CA 3.1.1.4 GO:0002446 ... P00592 7556053
    11608 1pis:A (-1.00) BS01 CA 3.1.1.4 GO:0002446 ... P00592 7556053
    11609 1piu:A (2.2) BS01 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    11610 1piu:A (2.2) BS02 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    11611 1piu:B (2.2) BS01 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    11612 1piu:B (2.2) BS02 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    11613 1piw:A (3.0) BS01 ZN 1.1.1.2
    1.6.-.-
    GO:0005575 ... Q04894 15289102
    11614 1piw:B (3.0) BS01 ZN 1.1.1.2
    1.6.-.-
    GO:0005575 ... Q04894 15289102
    11615 1piw:B (3.0) BS02 ZN 1.1.1.2
    1.6.-.-
    GO:0005575 ... Q04894 15289102
    11616 1piy:A (1.68) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11617 1piy:A (1.68) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11618 1piy:B (1.68) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11619 1piy:B (1.68) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11620 1piz:A (1.9) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11621 1piz:A (1.9) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11622 1piz:B (1.9) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11623 1piz:B (1.9) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11624 1pj0:A (1.9) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11625 1pj0:A (1.9) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11626 1pj0:B (1.9) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11627 1pj0:B (1.9) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11628 1pj1:A (1.95) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11629 1pj1:A (1.95) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11630 1pj1:B (1.95) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11631 1pj1:B (1.95) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    11632 1pj2:A (2.3) BS02 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    11633 1pj2:B (2.3) BS02 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    11634 1pj2:C (2.3) BS02 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    11635 1pj2:D (2.3) BS03 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    11636 1pj3:A (2.1) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    11637 1pj3:B (2.1) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    11638 1pj3:C (2.1) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    11639 1pj3:D (2.1) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    11640 1pj4:A (2.3) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    11641 1pj4:B (2.3) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    11642 1pj4:C (2.3) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    11643 1pj4:D (2.3) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    11644 1pj8:A (2.2) BS02 HG 3.4.21.64 GO:0004252 ... P06873 8811735
    11645 1pj8:A (2.2) BS03 HG 3.4.21.64 GO:0004252 ... P06873 8811735
    11646 1pj9:A (2.0) BS12 CA 2.4.1.19 GO:0003824 ... P43379 14705029
    11647 1pj9:A (2.0) BS13 CA 2.4.1.19 GO:0003824 ... P43379 14705029
    11648 1pj9:A (2.0) BS14 CA 2.4.1.19 GO:0003824 ... P43379 14705029
    11649 1pji:A (1.9) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 16243784
    11650 1pjj:A (1.9) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 16243784
    11651 1pjp:A (2.2) BS02 ZN 3.4.21.39 GO:0002003 ... P23946 9931257
    11652 1pjx:A (0.85) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 14501113
    11653 1pjx:A (0.85) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 14501113
    11654 1pk0:D (3.3) BS01 CA ? GO:0000086 ... P0DP23 14978283
    11655 1pk0:D (3.3) BS02 CA ? GO:0000086 ... P0DP23 14978283
    11656 1pk0:E (3.3) BS01 CA ? GO:0000086 ... P0DP23 14978283
    11657 1pk0:E (3.3) BS02 CA ? GO:0000086 ... P0DP23 14978283
    11658 1pk0:F (3.3) BS01 CA ? GO:0000086 ... P0DP23 14978283
    11659 1pk0:F (3.3) BS02 CA ? GO:0000086 ... P0DP23 14978283
    11660 1pk6:B (1.85) BS01 CA ? N/A P02746 12960167
    11661 1pk8:A (2.1) BS01 CA ? GO:0005524 ... P09951 14688264
    11662 1pk8:B (2.1) BS01 CA ? GO:0005524 ... P09951 14688264
    11663 1pk8:C (2.1) BS01 CA ? GO:0005524 ... P09951 14688264
    11664 1pk8:D (2.1) BS01 CA ? GO:0005524 ... P09951 14688264
    11665 1pk8:E (2.1) BS01 CA ? GO:0005524 ... P09951 14688264
    11666 1pk8:F (2.1) BS01 CA ? GO:0005524 ... P09951 14688264
    11667 1pk8:G (2.1) BS01 CA ? GO:0005524 ... P09951 14688264
    11668 1pk8:H (2.1) BS01 CA ? GO:0005524 ... P09951 14688264
    11669 1pkg:B (2.9) BS01 MG 2.7.10.1 GO:0004672 ... P10721 12824176
    11670 1pkn:A (2.9) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 8193145
    11671 1pl4:A (1.47) BS01 MN 1.15.1.1 GO:0004784 ... P04179 14638684
    11672 1pl4:B (1.47) BS01 MN 1.15.1.1 GO:0004784 ... P04179 14638684
    11673 1pl4:C (1.47) BS01 MN 1.15.1.1 GO:0004784 ... P04179 14638684
    11674 1pl4:D (1.47) BS01 MN 1.15.1.1 GO:0004784 ... P04179 14638684
    11675 1pl6:A (2.0) BS01 ZN 1.1.1.-
    1.1.1.14
    1.1.1.4
    1.1.1.56
    1.1.1.9
    GO:0000721 ... Q00796 12962626
    11676 1pl6:B (2.0) BS01 ZN 1.1.1.-
    1.1.1.14
    1.1.1.4
    1.1.1.56
    1.1.1.9
    GO:0000721 ... Q00796 12962626
    11677 1pl6:C (2.0) BS01 ZN 1.1.1.-
    1.1.1.14
    1.1.1.4
    1.1.1.56
    1.1.1.9
    GO:0000721 ... Q00796 12962626
    11678 1pl6:D (2.0) BS01 ZN 1.1.1.-
    1.1.1.14
    1.1.1.4
    1.1.1.56
    1.1.1.9
    GO:0000721 ... Q00796 12962626
    11679 1pl7:A (2.2) BS01 ZN 1.1.1.-
    1.1.1.14
    1.1.1.4
    1.1.1.56
    1.1.1.9
    GO:0000721 ... Q00796 12962626
    11680 1pl7:B (2.2) BS01 ZN 1.1.1.-
    1.1.1.14
    1.1.1.4
    1.1.1.56
    1.1.1.9
    GO:0000721 ... Q00796 12962626
    11681 1pl7:C (2.2) BS01 ZN 1.1.1.-
    1.1.1.14
    1.1.1.4
    1.1.1.56
    1.1.1.9
    GO:0000721 ... Q00796 12962626
    11682 1pl7:D (2.2) BS01 ZN 1.1.1.-
    1.1.1.14
    1.1.1.4
    1.1.1.56
    1.1.1.9
    GO:0000721 ... Q00796 12962626
    11683 1pl8:A (1.9) BS01 ZN 1.1.1.-
    1.1.1.14
    1.1.1.4
    1.1.1.56
    1.1.1.9
    GO:0000721 ... Q00796 12962626
    11684 1pl8:B (1.9) BS01 ZN 1.1.1.-
    1.1.1.14
    1.1.1.4
    1.1.1.56
    1.1.1.9
    GO:0000721 ... Q00796 12962626
    11685 1pl8:C (1.9) BS01 ZN 1.1.1.-
    1.1.1.14
    1.1.1.4
    1.1.1.56
    1.1.1.9
    GO:0000721 ... Q00796 12962626
    11686 1pl8:D (1.9) BS01 ZN 1.1.1.-
    1.1.1.14
    1.1.1.4
    1.1.1.56
    1.1.1.9
    GO:0000721 ... Q00796 12962626
    11687 1pla:A (-1.00) BS01 CU ? GO:0005507 ... P17341 8204598
    11688 1plb:A (-1.00) BS01 CU ? GO:0005507 ... P17341 8204598
    11689 1plc:A (1.33) BS01 CU ? GO:0005507 ... P00299 1492962
    11690 1plj:A (2.8) BS01 MG 3.6.5.2 GO:0003924 ... P01112 15299412
    11691 1plk:A (2.8) BS01 MG 3.6.5.2 GO:0003924 ... P01112 15299412
    11692 1plu:A (2.2) BS01 LU 4.2.2.2 GO:0005576 ... P11073 12228363
    11693 1pm2:A (1.8) BS01 MN 1.17.4.1 GO:0004748 ... P69924 14677973
    11694 1pm2:A (1.8) BS02 MN 1.17.4.1 GO:0004748 ... P69924 14677973
    11695 1pm2:B (1.8) BS01 MN 1.17.4.1 GO:0004748 ... P69924 14677973
    11696 1pm2:B (1.8) BS02 MN 1.17.4.1 GO:0004748 ... P69924 14677973
    11697 1pm5:A (1.95) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 16243784
    11698 1pm9:A (1.7) BS01 MN3 1.15.1.1 GO:0004784 ... P04179 14638684
    11699 1pm9:B (1.7) BS01 MN3 1.15.1.1 GO:0004784 ... P04179 14638684
    11700 1pmh:X (1.06) BS05 CA 3.2.1.78 N/A P77847 15210353
    11701 1pmi:A (1.7) BS01 ZN 5.3.1.8 GO:0000032 ... P34948 8612079
    11702 1pmj:X (1.55) BS01 CA 3.2.1.78 N/A P77847 15210353
    11703 1pmy:A (1.5) BS01 CU ? GO:0005507 ... P04171 15299445
    11704 1pnc:A (1.6) BS01 CU ? GO:0005507 ... P00299 15299368
    11705 1pnd:A (1.6) BS01 CU ? GO:0005507 ... P00299 15299368
    11706 1pnk:B (1.9) BS01 CA 3.5.1.11 GO:0016787 ... P06875 7816145
    11707 1pnl:B (2.5) BS01 CA 3.5.1.11 GO:0016787 ... P06875 7816145
    11708 1pnm:B (2.5) BS01 CA 3.5.1.11 GO:0016787 ... P06875 7816145
    11709 1po7:A (1.2) BS01 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    11710 1po7:A (1.2) BS02 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    11711 1po9:A (2.0) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12946361
    11712 1po9:A (2.0) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12946361
    11713 1po9:B (2.0) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12946361
    11714 1po9:B (2.0) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12946361
    11715 1poa:A (1.5) BS01 CA 3.1.1.4 GO:0004623 ... P00598 2274785
    11716 1poa:A (1.5) BS02 CA 3.1.1.4 GO:0004623 ... P00598 2274785
    11717 1pob:A (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P00598 2274787
    11718 1pob:A (2.0) BS02 CA 3.1.1.4 GO:0004623 ... P00598 2274787
    11719 1pob:B (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P00598 2274787
    11720 1pob:B (2.0) BS02 CA 3.1.1.4 GO:0004623 ... P00598 2274787
    11721 1poc:A (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P00630 2274788
    11722 1pod:A (2.1) BS01 CA 3.1.1.4 GO:0004623 ... P14555 1948070
    11723 1poe:A (2.1) BS01 CA 3.1.1.4 GO:0004623 ... P14555 1948070
    11724 1poe:A (2.1) BS02 CA 3.1.1.4 GO:0004623 ... P14555 1948070
    11725 1poe:B (2.1) BS01 CA 3.1.1.4 GO:0004623 ... P14555 1948070
    11726 1poe:B (2.1) BS02 CA 3.1.1.4 GO:0004623 ... P14555 1948070
    11727 1poj:A (3.3) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12946361
    11728 1poj:A (3.3) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12946361
    11729 1poj:B (3.3) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12946361
    11730 1poj:B (3.3) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12946361
    11731 1pok:A (2.7) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12946361
    11732 1pok:A (2.7) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12946361
    11733 1pok:B (2.7) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12946361
    11734 1pok:B (2.7) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12946361
    11735 1poo:A (2.1) BS01 CA 3.1.3.8 GO:0005576 ... O66037 10655618
    11736 1poo:A (2.1) BS02 CA 3.1.3.8 GO:0005576 ... O66037 10655618
    11737 1pow:A (2.5) BS01 MG 1.2.3.3 GO:0000287 ... P37063 8145244
    11738 1pow:B (2.5) BS01 MG 1.2.3.3 GO:0000287 ... P37063 8145244
    11739 1pox:A (2.1) BS01 MG 1.2.3.3 GO:0000287 ... P37063 8145244
    11740 1pox:B (2.1) BS01 MG 1.2.3.3 GO:0000287 ... P37063 8145244
    11741 1ppc:E (1.8) BS02 CA 3.4.21.4 GO:0004175 ... P00760 2226434
    11742 1pph:E (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 1879520
    11743 1ppi:A (2.2) BS06 CA 3.2.1.1 GO:0003824 ... P00690 8193143
    11744 1ppv:A (1.7) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    11745 1ppv:A (1.7) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    11746 1ppv:B (1.7) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    11747 1ppv:B (1.7) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    11748 1ppw:A (2.21) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    11749 1ppw:A (2.21) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    11750 1ppw:B (2.21) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    11751 1ppw:B (2.21) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    11752 1ppx:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    11753 1pq3:A (2.7) BS01 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    11754 1pq3:A (2.7) BS02 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    11755 1pq3:B (2.7) BS01 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    11756 1pq3:B (2.7) BS02 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    11757 1pq3:C (2.7) BS01 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    11758 1pq3:C (2.7) BS02 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    11759 1pq3:D (2.7) BS01 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    11760 1pq3:D (2.7) BS02 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    11761 1pq3:E (2.7) BS01 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    11762 1pq3:E (2.7) BS02 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    11763 1pq3:F (2.7) BS01 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    11764 1pq3:F (2.7) BS02 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    11765 1pq4:A (1.9) BS01 ZN ? GO:0030001 ... P73085 14583199
    11766 1pq4:B (1.9) BS01 ZN ? GO:0030001 ... P73085 14583199
    11767 1prc:L (2.3) BS05 FE ? GO:0009772 ... P06009 7877166
    11768 1prc:M (2.3) BS03 FE ? GO:0009772 ... P06010 7877166
    11769 1prr:A (-1.00) BS01 CA ? GO:0030435 ... P02966 8081742
    11770 1prr:A (-1.00) BS02 CA ? GO:0030435 ... P02966 8081742
    11771 1prs:A (-1.00) BS01 CA ? GO:0030435 ... P02966 8081742
    11772 1prs:A (-1.00) BS02 CA ? GO:0030435 ... P02966 8081742
    11773 1prw:A (1.7) BS01 CA ? GO:0000922 ... P62157 14527397
    11774 1prw:A (1.7) BS02 CA ? GO:0000922 ... P62157 14527397
    11775 1prw:A (1.7) BS03 CA ? GO:0000922 ... P62157 14527397
    11776 1prw:A (1.7) BS04 CA ? GO:0000922 ... P62157 14527397
    11777 1ps0:A (3.01) BS01 ZN 1.1.1.2
    1.6.-.-
    GO:0005575 ... Q04894 15289102
    11778 1ps3:A (1.8) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 14636047
    11779 1ps6:A (2.25) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    11780 1ps6:B (2.25) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    11781 1ps7:A (2.47) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    11782 1ps7:B (2.47) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    11783 1ps7:C (2.47) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    11784 1ps7:D (2.47) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    11785 1psc:A (2.0) BS01 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    11786 1psc:A (2.0) BS02 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    11787 1psc:B (2.0) BS01 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    11788 1psc:B (2.0) BS02 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    11789 1psh:A (2.3) BS01 CA 3.1.1.4 GO:0004623 ... P15445 8419939
    11790 1psh:B (2.3) BS01 CA 3.1.1.4 GO:0004623 ... P15445 8419939
    11791 1psh:C (2.3) BS01 CA 3.1.1.4 GO:0004623 ... P15445 8419939
    11792 1psj:A (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14418 8636969
    11793 1pss:L (3.0) BS04 FE ? GO:0009772 ... P0C0Y8 8161514
    11794 1pss:M (3.0) BS02 FE ? GO:0009772 ... P0C0Y9 8161514
    11795 1pst:L (3.0) BS05 FE ? GO:0009772 ... P0C0Y8 8161514
    11796 1pst:M (3.0) BS04 FE ? GO:0009772 ... P0C0Y9 8161514
    11797 1psz:A (2.0) BS01 ZN ? GO:0007155 ... P0A4G2 9862808
    11798 1pt2:A (2.1) BS03 CA 2.4.1.10 GO:0005576 ... P05655 14517548
    11799 1pt6:A (1.87) BS01 MG ? N/A P56199 14660600
    11800 1pt6:B (1.87) BS01 MG ? N/A P56199 14660600

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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