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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    110601 5uiw:A (2.204) BS01 ZN ? GO:0004930 ... P00268
    P51681    		 28636951
    110602 5uiz:A (2.0) BS01 CU ? N/A Q47QG3 29213309
    110603 5uj0:A (2.3) BS01 MG 2.7.1.78
    3.1.3.34    		 GO:0047846 ... P06855 N/A
    110604 5uj0:B (2.3) BS01 MG 2.7.1.78
    3.1.3.34    		 GO:0047846 ... P06855 N/A
    110605 5uj2:A (2.9) BS03 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... Q99IB8 28274633
    110606 5uj2:A (2.9) BS05 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... Q99IB8 28274633
    110607 5uj2:A (2.9) BS06 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... Q99IB8 28274633
    110608 5uj6:A (1.9) BS01 CA ? GO:0004553 ... A0A078SUX9 28578872
    110609 5uj6:B (1.9) BS01 CA ? GO:0004553 ... A0A078SUX9 28578872
    110610 5uj7:A (3.394) BS02 MG ? GO:0005524 ... Q13415 28112645
    110611 5uj7:B (3.394) BS02 MG ? GO:0005524 ... Q13415 28112645
    110612 5uj7:D (3.394) BS02 MG ? GO:0000166 ... O43929 28112645
    110613 5ujm:A (18.0) BS02 MG ? GO:0005524 ... Q13415 28112645
    110614 5ujp:A (1.42) BS01 CA ? GO:0046872 ... A0A125SA29 N/A
    110615 5ujp:B (1.42) BS01 CA ? GO:0046872 ... A0A125SA29 N/A
    110616 5uk5:A (2.506) BS03 CA ? GO:0005509 ... Q07008 28254785
    110617 5uk5:A (2.506) BS04 CA ? GO:0005509 ... Q07008 28254785
    110618 5uk5:A (2.506) BS05 CA ? GO:0005509 ... Q07008 28254785
    110619 5ukg:A (2.36) BS01 CA N/A GO:0005509 ... N/A 29338710
    110620 5ukg:A (2.36) BS02 CA N/A GO:0005509 ... N/A 29338710
    110621 5ukg:A (2.36) BS03 CA N/A GO:0005509 ... N/A 29338710
    110622 5ukg:A (2.36) BS04 CA N/A GO:0005509 ... N/A 29338710
    110623 5ukg:B (2.36) BS01 CA N/A GO:0005509 ... N/A 29338710
    110624 5ukg:B (2.36) BS02 CA N/A GO:0005509 ... N/A 29338710
    110625 5ukg:B (2.36) BS03 CA N/A GO:0005509 ... N/A 29338710
    110626 5ukg:B (2.36) BS04 CA N/A GO:0005509 ... N/A 29338710
    110627 5ukh:A (1.98) BS01 CA ? N/A T1ZG69 28696203
    110628 5uki:A (1.8) BS01 ZN 3.1.4.- GO:0000375 ... C4M1P9 28504306
    110629 5uki:A (1.8) BS02 MN 3.1.4.- GO:0000375 ... C4M1P9 28504306
    110630 5ukk:A (2.6) BS01 MG 2.7.11.15 GO:0001664 ... P25098 28323425
    110631 5ukl:A (2.15) BS01 MG 2.7.11.15 GO:0001664 ... P25098 28323425
    110632 5ukm:A (3.03) BS02 MG 2.7.11.15 GO:0001664 ... P21146 28323425
    110633 5ul5:A (2.2) BS01 FE2 3.1.1.64
    5.3.3.22    		 GO:0001786 ... Q28175 28476927
    110634 5ul5:B (2.2) BS01 FE2 3.1.1.64
    5.3.3.22    		 GO:0001786 ... Q28175 28476927
    110635 5ulg:A (2.1) BS01 FE2 3.1.1.64
    5.3.3.22    		 GO:0001786 ... Q28175 28476927
    110636 5ulg:B (2.1) BS01 FE2 3.1.1.64
    5.3.3.22    		 GO:0001786 ... Q28175 28476927
    110637 5ulh:C (1.95) BS01 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 N/A
    110638 5ulh:C (1.95) BS02 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 N/A
    110639 5uli:A (2.1) BS01 CA 3.1.13.-
    3.6.1.-    		 GO:0000166 ... O70348 28283058
    110640 5ulj:A (1.911) BS01 CA 3.6.1.- GO:0000166 ... A3LNL5 28283058
    110641 5ulj:B (1.911) BS01 CA 3.6.1.- GO:0000166 ... A3LNL5 28283058
    110642 5ulk:C (2.38) BS01 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 N/A
    110643 5ulk:C (2.38) BS02 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 N/A
    110644 5uln:A (1.35) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28947945
    110645 5ulu:A (2.85) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    110646 5ulu:A (2.85) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    110647 5ulu:A (2.85) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    110648 5ulu:A (2.85) BS04 CA ? GO:0005509 ... Q99PF4 30033219
    110649 5ulu:A (2.85) BS05 CA ? GO:0005509 ... Q99PF4 30033219
    110650 5ulu:A (2.85) BS06 CA ? GO:0005509 ... Q99PF4 30033219
    110651 5ulw:A (2.617) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 28272441
    110652 5uly:A (2.64) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    110653 5uly:A (2.64) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    110654 5uly:B (2.64) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    110655 5uly:B (2.64) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    110656 5uly:C (2.64) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    110657 5uly:C (2.64) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    110658 5uly:D (2.64) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    110659 5uly:D (2.64) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    110660 5um3:A (1.198) BS01 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    110661 5um3:A (1.198) BS02 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    110662 5um3:A (1.198) BS03 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    110663 5umc:A (2.15) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28947945
    110664 5umd:D (3.2) BS02 MG ? GO:0002181 ... Q8I3T9 28288098
    110665 5umd:c (3.2) BS03 ZN ? GO:0003723 ... C0H4L5 28288098
    110666 5umd:f (3.2) BS02 ZN ? GO:0003735 ... Q8ID50 28288098
    110667 5umd:h (3.2) BS02 ZN ? GO:0003735 ... O96184 28288098
    110668 5umf:A (1.4) BS01 ZN 5.1.3.1 GO:0004750 ... B4RLV9 N/A
    110669 5umf:B (1.4) BS01 ZN 5.1.3.1 GO:0004750 ... B4RLV9 N/A
    110670 5umf:C (1.4) BS01 ZN 5.1.3.1 GO:0004750 ... B4RLV9 N/A
    110671 5umh:A (1.35) BS01 ZN 1.13.11.1 GO:0003824 ... A0A0H3KXJ8 N/A
    110672 5umh:B (1.35) BS01 ZN 1.13.11.1 GO:0003824 ... A0A0H3KXJ8 N/A
    110673 5un2:A (2.96) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    110674 5un2:A (2.96) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    110675 5un2:A (2.96) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    110676 5un2:A (2.96) BS04 CA ? GO:0005509 ... Q99PF4 30033219
    110677 5un2:A (2.96) BS05 CA ? GO:0005509 ... Q99PF4 30033219
    110678 5un2:A (2.96) BS06 CA ? GO:0005509 ... Q99PF4 30033219
    110679 5un2:A (2.96) BS07 CA ? GO:0005509 ... Q99PF4 30033219
    110680 5un2:A (2.96) BS08 CA ? GO:0005509 ... Q99PF4 30033219
    110681 5un3:A (1.60004) BS01 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110682 5un3:A (1.60004) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110683 5un3:A (1.60004) BS03 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110684 5un3:A (1.60004) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110685 5un3:A (1.60004) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110686 5un3:A (1.60004) BS06 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110687 5un7:A (2.1) BS01 ZN ? GO:0000723 ... Q9NUX5 28393830
    110688 5und:A (2.549) BS03 ZN ? N/A P49711 28529057
    110689 5und:A (2.549) BS04 ZN ? N/A P49711 28529057
    110690 5und:A (2.549) BS05 ZN ? N/A P49711 28529057
    110691 5und:A (2.549) BS06 ZN ? N/A P49711 28529057
    110692 5und:A (2.549) BS07 ZN ? N/A P49711 28529057
    110693 5und:A (2.549) BS08 ZN ? N/A P49711 28529057
    110694 5und:B (2.549) BS03 ZN ? N/A P49711 28529057
    110695 5und:B (2.549) BS04 ZN ? N/A P49711 28529057
    110696 5und:B (2.549) BS05 ZN ? N/A P49711 28529057
    110697 5und:B (2.549) BS06 ZN ? N/A P49711 28529057
    110698 5und:B (2.549) BS07 ZN ? N/A P49711 28529057
    110699 5unr:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110700 5unr:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110701 5uns:A (1.9) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110702 5uns:B (1.9) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110703 5unt:A (2.05) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110704 5unt:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110705 5unu:A (2.05) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110706 5unu:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110707 5unv:A (2.0) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110708 5unv:B (2.0) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110709 5unw:A (2.044) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110710 5unx:A (2.03) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110711 5unx:B (2.03) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110712 5uny:A (1.82) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110713 5uny:B (1.82) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110714 5unz:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110715 5unz:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110716 5uo0:A (1.97) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110717 5uo0:B (1.97) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    110718 5uo1:A (1.9) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110719 5uo1:B (1.9) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110720 5uo2:A (1.947) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110721 5uo2:B (1.947) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110722 5uo3:A (2.2) BS05 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110723 5uo3:B (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110724 5uo4:A (2.0) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110725 5uo4:B (2.0) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110726 5uo5:A (2.0) BS05 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110727 5uo5:B (2.0) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110728 5uo6:A (1.96) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110729 5uo6:B (1.96) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110730 5uo7:A (2.06) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110731 5uo7:B (2.06) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 28422508
    110732 5uo8:A (2.18) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110733 5uo8:B (2.18) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110734 5uo8:C (2.18) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110735 5uo8:D (2.18) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110736 5uo9:A (2.19) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110737 5uo9:B (2.19) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110738 5uo9:C (2.19) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110739 5uo9:D (2.19) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110740 5uoa:A (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110741 5uoa:B (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110742 5uob:A (2.292) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110743 5uob:B (2.292) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110744 5uob:C (2.292) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110745 5uob:D (2.292) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110746 5uoc:A (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110747 5uoc:B (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110748 5uoc:C (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110749 5uoc:D (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 28422508
    110750 5uod:A (2.01) BS04 ZN 1.14.13.39 GO:0004517 ... P29473 28422508
    110751 5uod:B (2.01) BS02 ZN 1.14.13.39 GO:0004517 ... P29473 28422508
    110752 5uop:A (2.85) BS03 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P14350 28285916
    110753 5uop:A (2.85) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P14350 28285916
    110754 5uop:A (2.85) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P14350 28285916
    110755 5uoq:A (2.61) BS03 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P14350 28285916
    110756 5uoq:A (2.61) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P14350 28285916
    110757 5uoq:A (2.61) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P14350 28285916
    110758 5uoy:A (1.82) BS01 ZN 3.1.4.17 GO:0004114 ... Q01064 28406621
    110759 5up0:A (2.04) BS01 ZN 3.1.4.17 GO:0004114 ... Q01064 28406621
    110760 5up7:A (1.79) BS01 CA 1.16.3.1 GO:0004322 ... P02794 28590729
    110761 5up8:A (2.631) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110762 5up8:A (2.631) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110763 5up9:A (2.45) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110764 5up9:A (2.45) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110765 5up9:B (2.45) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110766 5up9:B (2.45) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110767 5up9:C (2.45) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110768 5up9:C (2.45) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110769 5up9:D (2.45) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110770 5up9:D (2.45) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110771 5up9:E (2.45) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110772 5up9:E (2.45) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110773 5up9:F (2.45) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110774 5up9:F (2.45) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 28590729
    110775 5upd:A (1.8) BS02 ZN 2.1.1.370
    2.1.1.371    		 GO:0005634 ... Q9BZ95 N/A
    110776 5upd:A (1.8) BS03 ZN 2.1.1.370
    2.1.1.371    		 GO:0005634 ... Q9BZ95 N/A
    110777 5upd:A (1.8) BS04 ZN 2.1.1.370
    2.1.1.371    		 GO:0005634 ... Q9BZ95 N/A
    110778 5upg:A (1.7) BS03 ZN 3.5.1.108 GO:0006796 ... P47205 N/A
    110779 5upg:A (1.7) BS04 ZN 3.5.1.108 GO:0006796 ... P47205 N/A
    110780 5upk:C (2.4) BS02 MG 3.6.5.2 GO:0000139 ... P60953 29295922
    110781 5uq6:A (1.182) BS01 FE 3.1.3.2 GO:0003993 ... P09889 28261912
    110782 5uq6:A (1.182) BS02 FE 3.1.3.2 GO:0003993 ... P09889 28261912
    110783 5uq7:4 (3.5) BS02 ZN ? GO:0003735 ... Q5SJE1 29456023
    110784 5uq7:5 (3.5) BS02 ZN ? GO:0003735 ... P80339 29456023
    110785 5uq7:6 (3.5) BS02 ZN ? GO:0000049 ... P35871 29456023
    110786 5uq7:9 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 29456023
    110787 5uq7:Y (3.5) BS02 ZN ? GO:0003723 ... Q5SHP9 29456023
    110788 5uq7:n (3.5) BS02 ZN N/A GO:0003735 ... N/A 29456023
    110789 5uq8:4 (3.2) BS02 ZN ? GO:0003735 ... Q5SJE1 29456023
    110790 5uq8:5 (3.2) BS02 ZN ? GO:0003735 ... P80339 29456023
    110791 5uq8:6 (3.2) BS02 ZN ? GO:0000049 ... P35871 29456023
    110792 5uq8:9 (3.2) BS02 ZN ? GO:0003735 ... Q5SHR2 29456023
    110793 5uq8:Y (3.2) BS02 ZN ? GO:0003723 ... Q5SHP9 29456023
    110794 5uq8:n (3.2) BS02 ZN N/A GO:0003735 ... N/A 29456023
    110795 5uqd:A (1.798) BS02 FE2 1.14.11.- GO:0005634 ... Q9GRZ3 28867287
    110796 5uqk:A (1.851) BS02 MN 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P16154 28433497
    110797 5uql:A (1.97) BS01 MN 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P16154 28433497
    110798 5uqm:A (2.03) BS01 MN 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P18177 28433497
    110799 5uqn:A (2.06) BS01 MN 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P18177 28433497
    110800 5uqp:A (2.4) BS01 ZN ? GO:0046872 ... Q0RYE0 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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