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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    109601 5tga:s5 (3.3) BS02 MG ? GO:0000028 ... P26783 27827794
    109602 5tgf:D (1.81) BS01 CA ? GO:0046872 ... B6VTD5 N/A
    109603 5tgk:A (1.912) BS01 MG 5.6.1.6 GO:0005524 ... P13569 29903914
    109604 5tgm:C8 (3.5) BS02 MG ? GO:0000054 ... P0CX55 27827794
    109605 5tgm:D6 (3.5) BS02 ZN ? GO:0003735 ... P39939 27827794
    109606 5tgm:D9 (3.5) BS02 ZN ? GO:0002181 ... P41057 27827794
    109607 5tgm:D9 (3.5) BS04 MG ? GO:0002181 ... P41057 27827794
    109608 5tgm:E1 (3.5) BS02 ZN ? GO:0003735 ... P05759 27827794
    109609 5tgm:L2 (3.5) BS03 MG ? GO:0002181 ... P0CX45 27827794
    109610 5tgm:L4 (3.5) BS04 MG ? GO:0002181 ... P10664 27827794
    109611 5tgm:L4 (3.5) BS05 MG ? GO:0002181 ... P10664 27827794
    109612 5tgm:M3 (3.5) BS03 MG ? GO:0002181 ... Q12690 27827794
    109613 5tgm:M7 (3.5) BS03 MG ? GO:0000448 ... P05740 27827794
    109614 5tgm:M7 (3.5) BS04 MG ? GO:0000448 ... P05740 27827794
    109615 5tgm:N3 (3.5) BS03 MG ? GO:0002181 ... P0CX41 27827794
    109616 5tgm:N3 (3.5) BS04 MG ? GO:0002181 ... P0CX41 27827794
    109617 5tgm:N5 (3.5) BS03 MG ? GO:0003735 ... P04456 27827794
    109618 5tgm:N6 (3.5) BS03 MG ? GO:0002181 ... P05743 27827794
    109619 5tgm:N8 (3.5) BS02 MG ? GO:0002181 ... P02406 27827794
    109620 5tgm:O5 (3.5) BS03 MG ? GO:0000463 ... P0CX84 27827794
    109621 5tgm:O7 (3.5) BS05 ZN ? GO:0000448 ... P49166 27827794
    109622 5tgm:Q0 (3.5) BS02 ZN ? GO:0003735 ... P0CH08 27827794
    109623 5tgm:Q2 (3.5) BS02 ZN ? GO:0002181 ... P0CX27 27827794
    109624 5tgm:Q3 (3.5) BS02 ZN ? GO:0002181 ... P0CX25 27827794
    109625 5tgm:S4 (3.5) BS02 MG ? GO:0002181 ... P0CX35 27827794
    109626 5tgm:c6 (3.5) BS02 MG ? GO:0000462 ... P0CX51 27827794
    109627 5tgm:c8 (3.5) BS03 MG ? GO:0000054 ... P0CX55 27827794
    109628 5tgm:c9 (3.5) BS02 MG ? GO:0000028 ... P07280 27827794
    109629 5tgm:d6 (3.5) BS02 ZN ? GO:0003735 ... P39939 27827794
    109630 5tgm:d7 (3.5) BS02 ZN ? GO:0000028 ... P35997 27827794
    109631 5tgm:d9 (3.5) BS02 ZN ? GO:0002181 ... P41057 27827794
    109632 5tgm:l2 (3.5) BS03 MG ? GO:0002181 ... P0CX45 27827794
    109633 5tgm:l3 (3.5) BS05 MG ? GO:0000027 ... P14126 27827794
    109634 5tgm:l5 (3.5) BS05 MG ? GO:0000027 ... P26321 27827794
    109635 5tgm:l7 (3.5) BS03 MG ? GO:0000463 ... P05737 27827794
    109636 5tgm:m5 (3.5) BS04 MG ? GO:0002181 ... P05748 27827794
    109637 5tgm:m6 (3.5) BS02 MG ? GO:0000470 ... P26784 27827794
    109638 5tgm:m6 (3.5) BS03 MG ? GO:0000470 ... P26784 27827794
    109639 5tgm:m6 (3.5) BS04 MG ? GO:0000470 ... P26784 27827794
    109640 5tgm:m7 (3.5) BS03 MG ? GO:0000448 ... P05740 27827794
    109641 5tgm:n0 (3.5) BS03 MG ? GO:0002181 ... P0CX23 27827794
    109642 5tgm:n8 (3.5) BS03 MG ? GO:0002181 ... P02406 27827794
    109643 5tgm:o3 (3.5) BS03 MG ? GO:0000027 ... P05744 27827794
    109644 5tgm:o4 (3.5) BS02 MG ? GO:0002181 ... P87262 27827794
    109645 5tgm:o7 (3.5) BS03 ZN ? GO:0000448 ... P49166 27827794
    109646 5tgm:q0 (3.5) BS02 ZN ? GO:0003735 ... P0CH08 27827794
    109647 5tgm:q2 (3.5) BS02 ZN ? GO:0002181 ... P0CX27 27827794
    109648 5tgm:q3 (3.5) BS02 ZN ? GO:0002181 ... P0CX25 27827794
    109649 5tgm:s4 (3.5) BS02 MG ? GO:0002181 ... P0CX35 27827794
    109650 5tgm:s6 (3.5) BS02 MG ? GO:0000462 ... P0CX37 27827794
    109651 5tgq:A (1.88) BS01 CA ? GO:0046872 ... A0A1S4NYF7 28180307
    109652 5tgx:A (2.3) BS03 CA ? GO:0046872 ... A0A1S4NYF7 28180307
    109653 5tgx:B (2.3) BS03 CA ? GO:0046872 ... A0A1S4NYF7 28180307
    109654 5tgx:C (2.3) BS03 CA ? GO:0046872 ... A0A1S4NYF7 28180307
    109655 5tgx:D (2.3) BS03 CA ? GO:0046872 ... A0A1S4NYF7 28180307
    109656 5th3:A (2.33) BS05 MG ? GO:0046872 ... A0A1S4NYF7 28180307
    109657 5th3:B (2.33) BS05 MG ? GO:0046872 ... A0A1S4NYF7 28180307
    109658 5th3:C (2.33) BS05 MG ? GO:0046872 ... A0A1S4NYF7 28180307
    109659 5th3:D (2.33) BS05 MG ? GO:0046872 ... A0A1S4NYF7 28180307
    109660 5th4:A (1.47) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28389830
    109661 5th6:A (1.7) BS01 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109662 5th6:A (1.7) BS02 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109663 5th6:A (1.7) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109664 5th6:A (1.7) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109665 5th6:A (1.7) BS05 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109666 5th6:B (1.7) BS01 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109667 5th6:B (1.7) BS02 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109668 5th6:B (1.7) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109669 5th6:B (1.7) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109670 5th6:B (1.7) BS05 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109671 5th6:C (1.7) BS01 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109672 5th6:C (1.7) BS02 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109673 5th6:C (1.7) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109674 5th6:C (1.7) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109675 5th6:C (1.7) BS05 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109676 5th6:D (1.7) BS01 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109677 5th6:D (1.7) BS02 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109678 5th6:D (1.7) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109679 5th6:D (1.7) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109680 5th6:D (1.7) BS05 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109681 5th9:A (2.999) BS01 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109682 5th9:A (2.999) BS02 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109683 5th9:A (2.999) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109684 5th9:A (2.999) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109685 5th9:B (2.999) BS01 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109686 5th9:B (2.999) BS02 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109687 5th9:B (2.999) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109688 5th9:B (2.999) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109689 5th9:C (2.999) BS01 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109690 5th9:C (2.999) BS02 ZN 3.4.24.35 GO:0004222 ... P14780 28235803
    109691 5th9:C (2.999) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109692 5th9:C (2.999) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    109693 5thg:A (3.106) BS03 CA N/A GO:0004519 ... N/A N/A
    109694 5thg:A (3.106) BS04 CA N/A GO:0004519 ... N/A N/A
    109695 5thg:D (3.106) BS03 CA N/A GO:0004519 ... N/A N/A
    109696 5thg:D (3.106) BS04 CA N/A GO:0004519 ... N/A N/A
    109697 5thi:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28389830
    109698 5thj:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28389830
    109699 5thn:A (1.33) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28389830
    109700 5thp:C (3.006) BS01 MG ? N/A P17301 28704364
    109701 5thp:F (3.006) BS01 MG ? N/A P17301 28704364
    109702 5thp:I (3.006) BS01 MG ? N/A P17301 28704364
    109703 5thp:L (3.006) BS01 MG ? N/A P17301 28704364
    109704 5thp:O (3.006) BS01 MG ? N/A P17301 28704364
    109705 5thp:R (3.006) BS01 MG ? N/A P17301 28704364
    109706 5ths:A (1.9) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 27933794
    109707 5ths:B (1.9) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 27933794
    109708 5tht:A (2.407) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 27933794
    109709 5tht:B (2.407) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 27933794
    109710 5tht:C (2.407) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 27933794
    109711 5tht:D (2.407) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 27933794
    109712 5thu:A (1.95) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 27933794
    109713 5thu:B (1.95) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 27933794
    109714 5thv:A (1.868) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 27933794
    109715 5thv:B (1.868) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 27933794
    109716 5thw:A (2.5) BS01 ZN 3.5.1.87 GO:0016787 ... A0A0H3KRF1 N/A
    109717 5thw:A (2.5) BS02 ZN 3.5.1.87 GO:0016787 ... A0A0H3KRF1 N/A
    109718 5thw:B (2.5) BS01 ZN 3.5.1.87 GO:0016787 ... A0A0H3KRF1 N/A
    109719 5thw:C (2.5) BS01 ZN 3.5.1.87 GO:0016787 ... A0A0H3KRF1 N/A
    109720 5thw:C (2.5) BS02 ZN 3.5.1.87 GO:0016787 ... A0A0H3KRF1 N/A
    109721 5thw:D (2.5) BS02 ZN 3.5.1.87 GO:0016787 ... A0A0H3KRF1 N/A
    109722 5thx:A (1.55) BS02 MG N/A GO:0004324 ... N/A N/A
    109723 5ti0:A (1.42) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28389830
    109724 5ti1:A (2.0) BS01 MG 3.7.1.2 GO:0003824 ... Q144Z1 N/A
    109725 5ti1:B (2.0) BS01 MG 3.7.1.2 GO:0003824 ... Q144Z1 N/A
    109726 5ti1:C (2.0) BS01 MG 3.7.1.2 GO:0003824 ... Q144Z1 N/A
    109727 5ti1:D (2.0) BS01 MG 3.7.1.2 GO:0003824 ... Q144Z1 N/A
    109728 5ti1:E (2.0) BS01 MG 3.7.1.2 GO:0003824 ... Q144Z1 N/A
    109729 5ti1:F (2.0) BS01 MG 3.7.1.2 GO:0003824 ... Q144Z1 N/A
    109730 5ti1:G (2.0) BS01 MG 3.7.1.2 GO:0003824 ... Q144Z1 N/A
    109731 5ti1:H (2.0) BS01 MG 3.7.1.2 GO:0003824 ... Q144Z1 N/A
    109732 5ti8:B (2.07) BS01 CA N/A GO:0008483 ... N/A 28045391
    109733 5tij:A (2.634) BS02 MG 4.2.1.11 GO:0000015 ... P09104 N/A
    109734 5tij:B (2.634) BS02 MG 4.2.1.11 GO:0000015 ... P09104 N/A
    109735 5tin:A (2.61) BS03 ZN ? GO:0004888 ... O75311 N/A
    109736 5tin:B (2.61) BS05 ZN ? GO:0004888 ... O75311 N/A
    109737 5tin:C (2.61) BS04 ZN ? GO:0004888 ... O75311 N/A
    109738 5tin:D (2.61) BS05 ZN ? GO:0004888 ... O75311 N/A
    109739 5tin:E (2.61) BS05 ZN ? GO:0004888 ... O75311 N/A
    109740 5tio:A (3.25) BS03 ZN ? GO:0004888 ... O75311 N/A
    109741 5tio:B (3.25) BS05 ZN ? GO:0004888 ... O75311 N/A
    109742 5tio:C (3.25) BS03 ZN ? GO:0004888 ... O75311 N/A
    109743 5tio:D (3.25) BS04 ZN ? GO:0004888 ... O75311 N/A
    109744 5tio:E (3.25) BS05 ZN ? GO:0004888 ... O75311 N/A
    109745 5tir:A (1.62) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    109746 5tir:B (1.62) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    109747 5tir:C (1.62) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    109748 5tir:D (1.62) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    109749 5tis:A (2.25) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 27871088
    109750 5tis:D (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    109751 5tis:a (2.25) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 27871088
    109752 5tis:d (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    109753 5tiw:A (1.66) BS03 CA ? GO:0046872 ... A0A094ZWQ2 28536265
    109754 5tiw:A (1.66) BS04 CA ? GO:0046872 ... A0A094ZWQ2 28536265
    109755 5tiw:B (1.66) BS01 CA ? GO:0046872 ... A0A094ZWQ2 28536265
    109756 5tiw:B (1.66) BS04 CA ? GO:0046872 ... A0A094ZWQ2 28536265
    109757 5tj3:A (1.7) BS01 ZN 3.1.3.1 GO:0004035 ... Q9KJX5 27670607
    109758 5tj3:A (1.7) BS02 ZN 3.1.3.1 GO:0004035 ... Q9KJX5 27670607
    109759 5tj3:A (1.7) BS03 ZN 3.1.3.1 GO:0004035 ... Q9KJX5 27670607
    109760 5tj3:A (1.7) BS04 ZN 3.1.3.1 GO:0004035 ... Q9KJX5 27670607
    109761 5tj6:A (3.5) BS01 CA ? GO:0005216 ... Q5QJC5 27974795
    109762 5tj6:A (3.5) BS02 CA ? GO:0005216 ... Q5QJC5 27974795
    109763 5tjg:D (2.6) BS01 ZN 2.7.7.6 GO:0000287 ... Q9KWU6 28546214
    109764 5tjg:D (2.6) BS02 ZN 2.7.7.6 GO:0000287 ... Q9KWU6 28546214
    109765 5tjg:D (2.6) BS03 MG 2.7.7.6 GO:0000287 ... Q9KWU6 28546214
    109766 5tk0:A (1.795) BS01 NA 3.2.1.17 GO:0003796 ... P00698 28319372
    109767 5tk5:A (1.88) BS01 FE 1.13.11.6 GO:0000334 ... P46952 28375145
    109768 5tk6:A (1.924) BS01 MG ? GO:0046872 ... O24769 27849620
    109769 5tk7:A (1.904) BS01 MG ? GO:0046872 ... O24769 27849620
    109770 5tk8:A (1.64) BS02 MG ? GO:0046872 ... O24769 27849620
    109771 5tk9:A (1.843) BS01 MG ? GO:0046872 ... O24769 27849620
    109772 5tka:A (2.048) BS01 MG ? GO:0046872 ... O24769 27849620
    109773 5tkb:A (2.16) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 30108788
    109774 5tkb:B (2.16) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 30108788
    109775 5tkb:C (2.16) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 30108788
    109776 5tkb:D (2.16) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 30108788
    109777 5tkf:A (2.1) BS03 CU 1.14.99.56 GO:0004497 ... Q1K8B6 28177316
    109778 5tkf:B (2.1) BS02 CU 1.14.99.56 GO:0004497 ... Q1K8B6 28177316
    109779 5tkf:C (2.1) BS02 CU 1.14.99.56 GO:0004497 ... Q1K8B6 28177316
    109780 5tkf:D (2.1) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 28177316
    109781 5tkg:A (1.2) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 28004877
    109782 5tkg:B (1.2) BS02 CU 1.14.99.56 GO:0004497 ... Q1K8B6 28004877
    109783 5tkh:A (1.2) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 28004877
    109784 5tkh:B (1.2) BS02 CU 1.14.99.56 GO:0004497 ... Q1K8B6 28004877
    109785 5tki:A (1.5) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 28004877
    109786 5tki:B (1.5) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 28004877
    109787 5tkm:A (1.9) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 28575276
    109788 5tkm:B (1.9) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 28575276
    109789 5tkq:A (1.75) BS01 ZN 1.13.11.6 GO:0000334 ... P46952 28375145
    109790 5tl6:B (2.618) BS01 ZN 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0C6X7 28438633
    109791 5tl6:D (2.618) BS01 ZN 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0C6X7 28438633
    109792 5tl7:B (2.44) BS01 ZN 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0C6X7 28438633
    109793 5tl7:D (2.44) BS01 ZN 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0C6X7 28438633
    109794 5tl8:A (1.71) BS03 CA ? GO:0004497 ... A0A2H4A2U9 N/A
    109795 5tl8:A (1.71) BS04 CA ? GO:0004497 ... A0A2H4A2U9 N/A
    109796 5tli:A (2.1) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 10651278
    109797 5tli:A (2.1) BS02 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    109798 5tli:A (2.1) BS03 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    109799 5tli:A (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    109800 5tli:A (2.1) BS05 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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