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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    109401 5tfc:A (1.92) BS01 MG 5.6.1.6 GO:0005524 ... P13569 N/A
    109402 5tfd:A (1.891) BS01 MG 5.6.1.6 GO:0005524 ... P13569 N/A
    109403 5tff:A (1.891) BS01 MG 5.6.1.6 GO:0005524 ... P13569 N/A
    109404 5tfg:A (1.91) BS01 MG 5.6.1.6 GO:0005524 ... P13569 N/A
    109405 5tfi:A (1.891) BS01 MG 5.6.1.6 GO:0005524 ... P13569 N/A
    109406 5tfj:A (1.85) BS01 MG 5.6.1.6 GO:0005524 ... P13569 N/A
    109407 5tfk:A (2.8) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    109408 5tfk:A (2.8) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    109409 5tfk:A (2.8) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    109410 5tfk:A (2.8) BS04 CA ? GO:0005509 ... Q99PF4 30033219
    109411 5tfk:A (2.8) BS05 CA ? GO:0005509 ... Q99PF4 30033219
    109412 5tfk:A (2.8) BS06 CA ? GO:0005509 ... Q99PF4 30033219
    109413 5tfk:A (2.8) BS07 CA ? GO:0005509 ... Q99PF4 30033219
    109414 5tfk:A (2.8) BS08 CA ? GO:0005509 ... Q99PF4 30033219
    109415 5tfl:A (3.56) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    109416 5tfl:A (3.56) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    109417 5tfl:B (3.56) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    109418 5tfl:B (3.56) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    109419 5tfm:A (2.92) BS01 CA ? GO:0005509 ... Q9H251 30033219
    109420 5tfm:A (2.92) BS02 CA ? GO:0005509 ... Q9H251 30033219
    109421 5tfm:A (2.92) BS03 CA ? GO:0005509 ... Q9H251 30033219
    109422 5tfm:A (2.92) BS04 CA ? GO:0005509 ... Q9H251 30033219
    109423 5tfm:A (2.92) BS05 CA ? GO:0005509 ... Q9H251 30033219
    109424 5tfr:A (3.05) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q32ZE1 28291746
    109425 5tfr:A (3.05) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q32ZE1 28291746
    109426 5tfr:B (3.05) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q32ZE1 28291746
    109427 5tfr:B (3.05) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q32ZE1 28291746
    109428 5tft:A (2.71) BS02 ZN 1.14.14.- GO:0004497 ... P10635 27997172
    109429 5tft:A (2.71) BS03 ZN 1.14.14.- GO:0004497 ... P10635 27997172
    109430 5tft:B (2.71) BS01 ZN 1.14.14.- GO:0004497 ... P10635 27997172
    109431 5tft:B (2.71) BS03 ZN 1.14.14.- GO:0004497 ... P10635 27997172
    109432 5tft:C (2.71) BS02 ZN 1.14.14.- GO:0004497 ... P10635 27997172
    109433 5tft:D (2.71) BS02 ZN 1.14.14.- GO:0004497 ... P10635 27997172
    109434 5tfu:A (2.75) BS02 ZN 1.14.14.- GO:0004497 ... P10635 27997172
    109435 5tfu:A (2.75) BS03 ZN 1.14.14.- GO:0004497 ... P10635 27997172
    109436 5tfu:B (2.75) BS01 ZN 1.14.14.- GO:0004497 ... P10635 27997172
    109437 5tfu:B (2.75) BS03 ZN 1.14.14.- GO:0004497 ... P10635 27997172
    109438 5tfu:C (2.75) BS02 ZN 1.14.14.- GO:0004497 ... P10635 27997172
    109439 5tfu:D (2.75) BS02 ZN 1.14.14.- GO:0004497 ... P10635 27997172
    109440 5tfx:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 27892589
    109441 5tfz:A (2.2) BS01 NI ? GO:0046872 ... Q4FNM4 28511016
    109442 5tfz:B (2.2) BS01 NI ? GO:0046872 ... Q4FNM4 28511016
    109443 5tg0:A (1.44) BS01 FE ? GO:0046872 ... Q4FNM4 28511016
    109444 5tg0:A (1.44) BS02 ZN ? GO:0046872 ... Q4FNM4 28511016
    109445 5tg3:A (1.765) BS01 CA ? GO:0005509 ... C0HK81 28130130
    109446 5tg3:A (1.765) BS02 MN ? GO:0005509 ... C0HK81 28130130
    109447 5tg3:B (1.765) BS01 CA ? GO:0005509 ... C0HK81 28130130
    109448 5tg3:B (1.765) BS02 MN ? GO:0005509 ... C0HK81 28130130
    109449 5tg3:C (1.765) BS01 CA ? GO:0005509 ... C0HK81 28130130
    109450 5tg3:C (1.765) BS02 MN ? GO:0005509 ... C0HK81 28130130
    109451 5tg3:D (1.765) BS01 CA ? GO:0005509 ... C0HK81 28130130
    109452 5tg3:D (1.765) BS02 MN ? GO:0005509 ... C0HK81 28130130
    109453 5tga:C1 (3.3) BS02 MG ? GO:0000028 ... P0CX47 27827794
    109454 5tga:C1 (3.3) BS03 MG ? GO:0000028 ... P0CX47 27827794
    109455 5tga:C8 (3.3) BS02 MG ? GO:0000054 ... P0CX55 27827794
    109456 5tga:D6 (3.3) BS02 ZN ? GO:0003735 ... P39939 27827794
    109457 5tga:D9 (3.3) BS02 ZN ? GO:0002181 ... P41057 27827794
    109458 5tga:D9 (3.3) BS04 MG ? GO:0002181 ... P41057 27827794
    109459 5tga:E1 (3.3) BS02 ZN ? GO:0003735 ... P05759 27827794
    109460 5tga:L2 (3.3) BS04 MG ? GO:0002181 ... P0CX45 27827794
    109461 5tga:L2 (3.3) BS05 MG ? GO:0002181 ... P0CX45 27827794
    109462 5tga:L2 (3.3) BS06 MG ? GO:0002181 ... P0CX45 27827794
    109463 5tga:L3 (3.3) BS03 MG ? GO:0000027 ... P14126 27827794
    109464 5tga:L4 (3.3) BS03 MG ? GO:0002181 ... P10664 27827794
    109465 5tga:L4 (3.3) BS05 MG ? GO:0002181 ... P10664 27827794
    109466 5tga:L4 (3.3) BS06 MG ? GO:0002181 ... P10664 27827794
    109467 5tga:L4 (3.3) BS07 MG ? GO:0002181 ... P10664 27827794
    109468 5tga:L5 (3.3) BS03 MG ? GO:0000027 ... P26321 27827794
    109469 5tga:L7 (3.3) BS03 MG ? GO:0000463 ... P05737 27827794
    109470 5tga:M0 (3.3) BS07 MG ? GO:0000027 ... P41805 27827794
    109471 5tga:M3 (3.3) BS03 MG ? GO:0002181 ... Q12690 27827794
    109472 5tga:M3 (3.3) BS04 MG ? GO:0002181 ... Q12690 27827794
    109473 5tga:M3 (3.3) BS05 MG ? GO:0002181 ... Q12690 27827794
    109474 5tga:M5 (3.3) BS04 MG ? GO:0002181 ... P05748 27827794
    109475 5tga:M5 (3.3) BS05 MG ? GO:0002181 ... P05748 27827794
    109476 5tga:M5 (3.3) BS06 MG ? GO:0002181 ... P05748 27827794
    109477 5tga:M6 (3.3) BS02 MG ? GO:0000470 ... P26784 27827794
    109478 5tga:M6 (3.3) BS03 MG ? GO:0000470 ... P26784 27827794
    109479 5tga:M6 (3.3) BS04 MG ? GO:0000470 ... P26784 27827794
    109480 5tga:M6 (3.3) BS05 MG ? GO:0000470 ... P26784 27827794
    109481 5tga:M6 (3.3) BS06 MG ? GO:0000470 ... P26784 27827794
    109482 5tga:M7 (3.3) BS03 MG ? GO:0000448 ... P05740 27827794
    109483 5tga:M7 (3.3) BS04 MG ? GO:0000448 ... P05740 27827794
    109484 5tga:M7 (3.3) BS05 MG ? GO:0000448 ... P05740 27827794
    109485 5tga:M7 (3.3) BS06 MG ? GO:0000448 ... P05740 27827794
    109486 5tga:M8 (3.3) BS02 MG ? GO:0002181 ... P0CX49 27827794
    109487 5tga:M8 (3.3) BS03 MG ? GO:0002181 ... P0CX49 27827794
    109488 5tga:M8 (3.3) BS04 MG ? GO:0002181 ... P0CX49 27827794
    109489 5tga:M8 (3.3) BS05 MG ? GO:0002181 ... P0CX49 27827794
    109490 5tga:M9 (3.3) BS06 MG ? GO:0002181 ... P0CX82 27827794
    109491 5tga:M9 (3.3) BS07 MG ? GO:0002181 ... P0CX82 27827794
    109492 5tga:N0 (3.3) BS03 MG ? GO:0002181 ... P0CX23 27827794
    109493 5tga:N0 (3.3) BS04 MG ? GO:0002181 ... P0CX23 27827794
    109494 5tga:N1 (3.3) BS04 MG ? GO:0002181 ... Q02753 27827794
    109495 5tga:N3 (3.3) BS03 MG ? GO:0002181 ... P0CX41 27827794
    109496 5tga:N6 (3.3) BS03 MG ? GO:0002181 ... P05743 27827794
    109497 5tga:N8 (3.3) BS02 MG ? GO:0002181 ... P02406 27827794
    109498 5tga:N8 (3.3) BS03 MG ? GO:0002181 ... P02406 27827794
    109499 5tga:N8 (3.3) BS04 MG ? GO:0002181 ... P02406 27827794
    109500 5tga:N8 (3.3) BS05 MG ? GO:0002181 ... P02406 27827794
    109501 5tga:O1 (3.3) BS02 MG ? GO:0002181 ... P0C2H8 27827794
    109502 5tga:O1 (3.3) BS03 MG ? GO:0002181 ... P0C2H8 27827794
    109503 5tga:O1 (3.3) BS04 MG ? GO:0002181 ... P0C2H8 27827794
    109504 5tga:O2 (3.3) BS02 MG ? GO:0002181 ... P38061 27827794
    109505 5tga:O2 (3.3) BS03 MG ? GO:0002181 ... P38061 27827794
    109506 5tga:O3 (3.3) BS02 MG ? GO:0000027 ... P05744 27827794
    109507 5tga:O4 (3.3) BS02 MG ? GO:0002181 ... P87262 27827794
    109508 5tga:O5 (3.3) BS03 MG ? GO:0000463 ... P0CX84 27827794
    109509 5tga:O7 (3.3) BS04 MG ? GO:0000448 ... P49166 27827794
    109510 5tga:O7 (3.3) BS05 ZN ? GO:0000448 ... P49166 27827794
    109511 5tga:O7 (3.3) BS08 MG ? GO:0000448 ... P49166 27827794
    109512 5tga:O7 (3.3) BS09 MG ? GO:0000448 ... P49166 27827794
    109513 5tga:O7 (3.3) BS10 MG ? GO:0000448 ... P49166 27827794
    109514 5tga:O9 (3.3) BS03 MG ? GO:0002181 ... P04650 27827794
    109515 5tga:Q0 (3.3) BS02 ZN ? GO:0003735 ... P0CH08 27827794
    109516 5tga:Q0 (3.3) BS03 MG ? GO:0003735 ... P0CH08 27827794
    109517 5tga:Q2 (3.3) BS02 ZN ? GO:0002181 ... P0CX27 27827794
    109518 5tga:Q3 (3.3) BS02 ZN ? GO:0002181 ... P0CX25 27827794
    109519 5tga:S4 (3.3) BS02 MG ? GO:0002181 ... P0CX35 27827794
    109520 5tga:S8 (3.3) BS04 MG ? GO:0000462 ... P0CX39 27827794
    109521 5tga:c1 (3.3) BS02 MG ? GO:0000028 ... P0CX47 27827794
    109522 5tga:c6 (3.3) BS02 MG ? GO:0000462 ... P0CX51 27827794
    109523 5tga:c8 (3.3) BS03 MG ? GO:0000054 ... P0CX55 27827794
    109524 5tga:c9 (3.3) BS02 MG ? GO:0000028 ... P07280 27827794
    109525 5tga:d6 (3.3) BS02 MG ? GO:0003735 ... P39939 27827794
    109526 5tga:d6 (3.3) BS03 ZN ? GO:0003735 ... P39939 27827794
    109527 5tga:d9 (3.3) BS02 ZN ? GO:0002181 ... P41057 27827794
    109528 5tga:d9 (3.3) BS03 MG ? GO:0002181 ... P41057 27827794
    109529 5tga:l2 (3.3) BS03 MG ? GO:0002181 ... P0CX45 27827794
    109530 5tga:l2 (3.3) BS04 MG ? GO:0002181 ... P0CX45 27827794
    109531 5tga:l3 (3.3) BS02 MG ? GO:0000027 ... P14126 27827794
    109532 5tga:l3 (3.3) BS03 MG ? GO:0000027 ... P14126 27827794
    109533 5tga:l3 (3.3) BS04 MG ? GO:0000027 ... P14126 27827794
    109534 5tga:l3 (3.3) BS07 MG ? GO:0000027 ... P14126 27827794
    109535 5tga:l3 (3.3) BS08 MG ? GO:0000027 ... P14126 27827794
    109536 5tga:l3 (3.3) BS09 MG ? GO:0000027 ... P14126 27827794
    109537 5tga:l3 (3.3) BS10 MG ? GO:0000027 ... P14126 27827794
    109538 5tga:l3 (3.3) BS11 MG ? GO:0000027 ... P14126 27827794
    109539 5tga:l3 (3.3) BS12 MG ? GO:0000027 ... P14126 27827794
    109540 5tga:l3 (3.3) BS13 MG ? GO:0000027 ... P14126 27827794
    109541 5tga:l4 (3.3) BS03 MG ? GO:0002181 ... P10664 27827794
    109542 5tga:l5 (3.3) BS03 MG ? GO:0000027 ... P26321 27827794
    109543 5tga:l5 (3.3) BS04 MG ? GO:0000027 ... P26321 27827794
    109544 5tga:l5 (3.3) BS05 MG ? GO:0000027 ... P26321 27827794
    109545 5tga:l5 (3.3) BS08 MG ? GO:0000027 ... P26321 27827794
    109546 5tga:l5 (3.3) BS09 MG ? GO:0000027 ... P26321 27827794
    109547 5tga:l5 (3.3) BS10 MG ? GO:0000027 ... P26321 27827794
    109548 5tga:l5 (3.3) BS11 MG ? GO:0000027 ... P26321 27827794
    109549 5tga:l7 (3.3) BS03 MG ? GO:0000463 ... P05737 27827794
    109550 5tga:l7 (3.3) BS04 MG ? GO:0000463 ... P05737 27827794
    109551 5tga:l9 (3.3) BS02 MG ? GO:0002181 ... P05738 27827794
    109552 5tga:l9 (3.3) BS03 MG ? GO:0002181 ... P05738 27827794
    109553 5tga:m3 (3.3) BS03 MG ? GO:0002181 ... Q12690 27827794
    109554 5tga:m4 (3.3) BS02 MG ? GO:0000027 ... P36105 27827794
    109555 5tga:m5 (3.3) BS03 MG ? GO:0002181 ... P05748 27827794
    109556 5tga:m6 (3.3) BS02 MG ? GO:0000470 ... P26784 27827794
    109557 5tga:m6 (3.3) BS03 MG ? GO:0000470 ... P26784 27827794
    109558 5tga:m6 (3.3) BS04 MG ? GO:0000470 ... P26784 27827794
    109559 5tga:m6 (3.3) BS05 MG ? GO:0000470 ... P26784 27827794
    109560 5tga:m6 (3.3) BS06 MG ? GO:0000470 ... P26784 27827794
    109561 5tga:m6 (3.3) BS07 MG ? GO:0000470 ... P26784 27827794
    109562 5tga:m7 (3.3) BS04 MG ? GO:0000448 ... P05740 27827794
    109563 5tga:m7 (3.3) BS05 MG ? GO:0000448 ... P05740 27827794
    109564 5tga:m7 (3.3) BS06 MG ? GO:0000448 ... P05740 27827794
    109565 5tga:m7 (3.3) BS07 MG ? GO:0000448 ... P05740 27827794
    109566 5tga:m8 (3.3) BS02 MG ? GO:0002181 ... P0CX49 27827794
    109567 5tga:m8 (3.3) BS03 MG ? GO:0002181 ... P0CX49 27827794
    109568 5tga:m9 (3.3) BS04 MG ? GO:0002181 ... P0CX82 27827794
    109569 5tga:m9 (3.3) BS06 MG ? GO:0002181 ... P0CX82 27827794
    109570 5tga:n0 (3.3) BS03 MG ? GO:0002181 ... P0CX23 27827794
    109571 5tga:n0 (3.3) BS04 MG ? GO:0002181 ... P0CX23 27827794
    109572 5tga:n1 (3.3) BS03 MG ? GO:0002181 ... Q02753 27827794
    109573 5tga:n1 (3.3) BS04 MG ? GO:0002181 ... Q02753 27827794
    109574 5tga:n1 (3.3) BS06 MG ? GO:0002181 ... Q02753 27827794
    109575 5tga:n1 (3.3) BS07 MG ? GO:0002181 ... Q02753 27827794
    109576 5tga:n3 (3.3) BS03 MG ? GO:0002181 ... P0CX41 27827794
    109577 5tga:n8 (3.3) BS02 MG ? GO:0002181 ... P02406 27827794
    109578 5tga:n8 (3.3) BS03 MG ? GO:0002181 ... P02406 27827794
    109579 5tga:n8 (3.3) BS04 MG ? GO:0002181 ... P02406 27827794
    109580 5tga:n9 (3.3) BS02 MG ? GO:0002181 ... P05747 27827794
    109581 5tga:n9 (3.3) BS04 MG ? GO:0002181 ... P05747 27827794
    109582 5tga:o1 (3.3) BS02 MG ? GO:0002181 ... P0C2H8 27827794
    109583 5tga:o2 (3.3) BS02 MG ? GO:0002181 ... P38061 27827794
    109584 5tga:o2 (3.3) BS03 MG ? GO:0002181 ... P38061 27827794
    109585 5tga:o2 (3.3) BS04 MG ? GO:0002181 ... P38061 27827794
    109586 5tga:o2 (3.3) BS05 MG ? GO:0002181 ... P38061 27827794
    109587 5tga:o3 (3.3) BS02 MG ? GO:0000027 ... P05744 27827794
    109588 5tga:o3 (3.3) BS03 MG ? GO:0000027 ... P05744 27827794
    109589 5tga:o4 (3.3) BS02 MG ? GO:0002181 ... P87262 27827794
    109590 5tga:o5 (3.3) BS03 MG ? GO:0000463 ... P0CX84 27827794
    109591 5tga:o6 (3.3) BS02 MG ? GO:0002181 ... P05745 27827794
    109592 5tga:o7 (3.3) BS03 MG ? GO:0000448 ... P49166 27827794
    109593 5tga:o7 (3.3) BS05 ZN ? GO:0000448 ... P49166 27827794
    109594 5tga:o7 (3.3) BS07 MG ? GO:0000448 ... P49166 27827794
    109595 5tga:p0 (3.3) BS02 MG ? N/A P05317 27827794
    109596 5tga:q0 (3.3) BS02 ZN ? GO:0003735 ... P0CH08 27827794
    109597 5tga:q2 (3.3) BS02 ZN ? GO:0002181 ... P0CX27 27827794
    109598 5tga:q2 (3.3) BS04 MG ? GO:0002181 ... P0CX27 27827794
    109599 5tga:q3 (3.3) BS03 ZN ? GO:0002181 ... P0CX25 27827794
    109600 5tga:q3 (3.3) BS04 MG ? GO:0002181 ... P0CX25 27827794
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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