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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    105801 5px2:B (1.43) BS02 ZN ? N/A P23497 28436492
    105802 5px3:A (1.57) BS01 ZN ? N/A P23497 28436492
    105803 5px3:A (1.57) BS02 ZN ? N/A P23497 28436492
    105804 5px3:B (1.57) BS01 ZN ? N/A P23497 28436492
    105805 5px3:B (1.57) BS02 ZN ? N/A P23497 28436492
    105806 5px4:A (1.45) BS01 ZN ? N/A P23497 28436492
    105807 5px4:A (1.45) BS02 ZN ? N/A P23497 28436492
    105808 5px4:A (1.45) BS03 ZN ? N/A P23497 28436492
    105809 5px4:B (1.45) BS01 ZN ? N/A P23497 28436492
    105810 5px4:B (1.45) BS02 ZN ? N/A P23497 28436492
    105811 5px5:A (1.74) BS01 ZN ? N/A P23497 28436492
    105812 5px5:A (1.74) BS02 ZN ? N/A P23497 28436492
    105813 5px5:A (1.74) BS03 ZN ? N/A P23497 28436492
    105814 5px5:B (1.74) BS01 ZN ? N/A P23497 28436492
    105815 5px5:B (1.74) BS02 ZN ? N/A P23497 28436492
    105816 5px6:A (1.43) BS01 ZN ? N/A P23497 28436492
    105817 5px6:A (1.43) BS02 ZN ? N/A P23497 28436492
    105818 5px6:B (1.43) BS01 ZN ? N/A P23497 28436492
    105819 5px6:B (1.43) BS02 ZN ? N/A P23497 28436492
    105820 5px7:A (1.74) BS01 ZN ? N/A P23497 28436492
    105821 5px7:A (1.74) BS02 ZN ? N/A P23497 28436492
    105822 5px7:B (1.74) BS01 ZN ? N/A P23497 28436492
    105823 5px7:B (1.74) BS02 ZN ? N/A P23497 28436492
    105824 5px8:A (1.71) BS01 ZN ? N/A P23497 28436492
    105825 5px8:A (1.71) BS02 ZN ? N/A P23497 28436492
    105826 5px8:B (1.71) BS01 ZN ? N/A P23497 28436492
    105827 5px8:B (1.71) BS02 ZN ? N/A P23497 28436492
    105828 5px9:A (1.89) BS01 ZN ? N/A P23497 28436492
    105829 5px9:A (1.89) BS02 ZN ? N/A P23497 28436492
    105830 5px9:B (1.89) BS01 ZN ? N/A P23497 28436492
    105831 5px9:B (1.89) BS02 ZN ? N/A P23497 28436492
    105832 5pxa:A (1.43) BS01 ZN ? N/A P23497 28436492
    105833 5pxa:A (1.43) BS02 ZN ? N/A P23497 28436492
    105834 5pxa:B (1.43) BS01 ZN ? N/A P23497 28436492
    105835 5pxa:B (1.43) BS02 ZN ? N/A P23497 28436492
    105836 5pxb:A (1.46) BS01 ZN ? N/A P23497 28436492
    105837 5pxb:A (1.46) BS02 ZN ? N/A P23497 28436492
    105838 5pxb:A (1.46) BS03 ZN ? N/A P23497 28436492
    105839 5pxb:B (1.46) BS01 ZN ? N/A P23497 28436492
    105840 5pxb:B (1.46) BS02 ZN ? N/A P23497 28436492
    105841 5pxc:A (1.52) BS01 ZN ? N/A P23497 28436492
    105842 5pxc:A (1.52) BS02 ZN ? N/A P23497 28436492
    105843 5pxc:A (1.52) BS03 ZN ? N/A P23497 28436492
    105844 5pxc:B (1.52) BS01 ZN ? N/A P23497 28436492
    105845 5pxc:B (1.52) BS02 ZN ? N/A P23497 28436492
    105846 5pxd:A (1.64) BS01 ZN ? N/A P23497 28436492
    105847 5pxd:A (1.64) BS02 ZN ? N/A P23497 28436492
    105848 5pxd:A (1.64) BS03 ZN ? N/A P23497 28436492
    105849 5pxd:B (1.64) BS01 ZN ? N/A P23497 28436492
    105850 5pxd:B (1.64) BS02 ZN ? N/A P23497 28436492
    105851 5pxe:A (1.55) BS01 ZN ? N/A P23497 28436492
    105852 5pxe:A (1.55) BS02 ZN ? N/A P23497 28436492
    105853 5pxe:A (1.55) BS03 ZN ? N/A P23497 28436492
    105854 5pxe:B (1.55) BS01 ZN ? N/A P23497 28436492
    105855 5pxe:B (1.55) BS02 ZN ? N/A P23497 28436492
    105856 5pxf:A (1.71) BS01 ZN ? N/A P23497 28436492
    105857 5pxf:A (1.71) BS02 ZN ? N/A P23497 28436492
    105858 5pxf:B (1.71) BS01 ZN ? N/A P23497 28436492
    105859 5pxf:B (1.71) BS02 ZN ? N/A P23497 28436492
    105860 5pxg:A (1.98) BS01 ZN ? N/A P23497 28436492
    105861 5pxg:A (1.98) BS02 ZN ? N/A P23497 28436492
    105862 5pxg:B (1.98) BS01 ZN ? N/A P23497 28436492
    105863 5pxg:B (1.98) BS02 ZN ? N/A P23497 28436492
    105864 5pxh:A (2.25) BS01 ZN ? N/A P23497 28436492
    105865 5pxh:A (2.25) BS02 ZN ? N/A P23497 28436492
    105866 5pxh:B (2.25) BS01 ZN ? N/A P23497 28436492
    105867 5pxh:B (2.25) BS02 ZN ? N/A P23497 28436492
    105868 5pxi:A (1.76) BS01 ZN ? N/A P23497 28436492
    105869 5pxi:A (1.76) BS02 ZN ? N/A P23497 28436492
    105870 5pxi:B (1.76) BS01 ZN ? N/A P23497 28436492
    105871 5pxi:B (1.76) BS02 ZN ? N/A P23497 28436492
    105872 5pxj:A (1.68) BS01 ZN ? N/A P23497 28436492
    105873 5pxj:A (1.68) BS02 ZN ? N/A P23497 28436492
    105874 5pxj:B (1.68) BS01 ZN ? N/A P23497 28436492
    105875 5pxj:B (1.68) BS02 ZN ? N/A P23497 28436492
    105876 5pxk:A (1.98) BS01 ZN ? N/A P23497 28436492
    105877 5pxk:A (1.98) BS02 ZN ? N/A P23497 28436492
    105878 5pxk:B (1.98) BS01 ZN ? N/A P23497 28436492
    105879 5pxk:B (1.98) BS02 ZN ? N/A P23497 28436492
    105880 5pxl:A (1.35) BS01 ZN ? N/A P23497 28436492
    105881 5pxl:A (1.35) BS02 ZN ? N/A P23497 28436492
    105882 5pxl:B (1.35) BS01 ZN ? N/A P23497 28436492
    105883 5pxl:B (1.35) BS02 ZN ? N/A P23497 28436492
    105884 5pxm:A (1.59) BS01 ZN ? N/A P23497 28436492
    105885 5pxm:A (1.59) BS02 ZN ? N/A P23497 28436492
    105886 5pxm:A (1.59) BS03 ZN ? N/A P23497 28436492
    105887 5pxm:B (1.59) BS01 ZN ? N/A P23497 28436492
    105888 5pxm:B (1.59) BS02 ZN ? N/A P23497 28436492
    105889 5pxn:A (1.43) BS01 ZN ? N/A P23497 28436492
    105890 5pxn:A (1.43) BS02 ZN ? N/A P23497 28436492
    105891 5pxn:A (1.43) BS03 ZN ? N/A P23497 28436492
    105892 5pxn:B (1.43) BS01 ZN ? N/A P23497 28436492
    105893 5pxn:B (1.43) BS02 ZN ? N/A P23497 28436492
    105894 5pxo:A (1.78) BS01 ZN ? N/A P23497 28436492
    105895 5pxo:A (1.78) BS02 ZN ? N/A P23497 28436492
    105896 5pxo:A (1.78) BS03 ZN ? N/A P23497 28436492
    105897 5pxo:B (1.78) BS01 ZN ? N/A P23497 28436492
    105898 5pxo:B (1.78) BS02 ZN ? N/A P23497 28436492
    105899 5pxp:A (1.86) BS01 ZN ? N/A P23497 28436492
    105900 5pxp:A (1.86) BS02 ZN ? N/A P23497 28436492
    105901 5pxp:B (1.86) BS01 ZN ? N/A P23497 28436492
    105902 5pxp:B (1.86) BS02 ZN ? N/A P23497 28436492
    105903 5pxq:A (1.62) BS01 ZN ? N/A P23497 28436492
    105904 5pxq:A (1.62) BS02 ZN ? N/A P23497 28436492
    105905 5pxq:A (1.62) BS03 ZN ? N/A P23497 28436492
    105906 5pxq:B (1.62) BS01 ZN ? N/A P23497 28436492
    105907 5pxq:B (1.62) BS02 ZN ? N/A P23497 28436492
    105908 5pxr:A (1.81) BS01 ZN ? N/A P23497 28436492
    105909 5pxr:A (1.81) BS02 ZN ? N/A P23497 28436492
    105910 5pxr:A (1.81) BS03 ZN ? N/A P23497 28436492
    105911 5pxr:B (1.81) BS01 ZN ? N/A P23497 28436492
    105912 5pxr:B (1.81) BS02 ZN ? N/A P23497 28436492
    105913 5pxs:A (1.49) BS01 ZN ? N/A P23497 28436492
    105914 5pxs:A (1.49) BS02 ZN ? N/A P23497 28436492
    105915 5pxs:A (1.49) BS03 ZN ? N/A P23497 28436492
    105916 5pxs:B (1.49) BS01 ZN ? N/A P23497 28436492
    105917 5pxs:B (1.49) BS02 ZN ? N/A P23497 28436492
    105918 5pxt:A (1.4) BS01 ZN ? N/A P23497 28436492
    105919 5pxt:A (1.4) BS02 ZN ? N/A P23497 28436492
    105920 5pxt:A (1.4) BS03 ZN ? N/A P23497 28436492
    105921 5pxt:B (1.4) BS01 ZN ? N/A P23497 28436492
    105922 5pxt:B (1.4) BS02 ZN ? N/A P23497 28436492
    105923 5pxu:A (1.76) BS01 ZN ? N/A P23497 28436492
    105924 5pxu:A (1.76) BS02 ZN ? N/A P23497 28436492
    105925 5pxu:A (1.76) BS03 ZN ? N/A P23497 28436492
    105926 5pxu:B (1.76) BS01 ZN ? N/A P23497 28436492
    105927 5pxu:B (1.76) BS02 ZN ? N/A P23497 28436492
    105928 5pxv:A (1.65) BS01 ZN ? N/A P23497 28436492
    105929 5pxv:A (1.65) BS02 ZN ? N/A P23497 28436492
    105930 5pxv:A (1.65) BS03 ZN ? N/A P23497 28436492
    105931 5pxv:B (1.65) BS01 ZN ? N/A P23497 28436492
    105932 5pxv:B (1.65) BS02 ZN ? N/A P23497 28436492
    105933 5pxw:A (2.01) BS01 ZN ? N/A P23497 28436492
    105934 5pxw:A (2.01) BS02 ZN ? N/A P23497 28436492
    105935 5pxw:B (2.01) BS01 ZN ? N/A P23497 28436492
    105936 5pxw:B (2.01) BS02 ZN ? N/A P23497 28436492
    105937 5pxx:A (1.57) BS01 ZN ? N/A P23497 28436492
    105938 5pxx:A (1.57) BS02 ZN ? N/A P23497 28436492
    105939 5pxx:A (1.57) BS03 ZN ? N/A P23497 28436492
    105940 5pxx:B (1.57) BS01 ZN ? N/A P23497 28436492
    105941 5pxx:B (1.57) BS02 ZN ? N/A P23497 28436492
    105942 5pxy:A (2.14) BS01 ZN ? N/A P23497 28436492
    105943 5pxy:A (2.14) BS02 ZN ? N/A P23497 28436492
    105944 5pxy:B (2.14) BS01 ZN ? N/A P23497 28436492
    105945 5pxy:B (2.14) BS02 ZN ? N/A P23497 28436492
    105946 5pxz:A (1.65) BS01 ZN ? N/A P23497 28436492
    105947 5pxz:A (1.65) BS02 ZN ? N/A P23497 28436492
    105948 5pxz:A (1.65) BS03 ZN ? N/A P23497 28436492
    105949 5pxz:B (1.65) BS01 ZN ? N/A P23497 28436492
    105950 5pxz:B (1.65) BS02 ZN ? N/A P23497 28436492
    105951 5py0:A (1.7) BS01 ZN ? N/A P23497 28436492
    105952 5py0:A (1.7) BS02 ZN ? N/A P23497 28436492
    105953 5py0:A (1.7) BS03 ZN ? N/A P23497 28436492
    105954 5py0:B (1.7) BS01 ZN ? N/A P23497 28436492
    105955 5py0:B (1.7) BS02 ZN ? N/A P23497 28436492
    105956 5py1:A (1.74) BS01 ZN ? N/A P23497 28436492
    105957 5py1:A (1.74) BS02 ZN ? N/A P23497 28436492
    105958 5py1:A (1.74) BS03 ZN ? N/A P23497 28436492
    105959 5py1:B (1.74) BS01 ZN ? N/A P23497 28436492
    105960 5py1:B (1.74) BS02 ZN ? N/A P23497 28436492
    105961 5py2:A (1.62) BS01 ZN ? N/A P23497 28436492
    105962 5py2:A (1.62) BS02 ZN ? N/A P23497 28436492
    105963 5py2:A (1.62) BS03 ZN ? N/A P23497 28436492
    105964 5py2:B (1.62) BS01 ZN ? N/A P23497 28436492
    105965 5py2:B (1.62) BS02 ZN ? N/A P23497 28436492
    105966 5py3:A (1.78) BS01 ZN ? N/A P23497 28436492
    105967 5py3:A (1.78) BS02 ZN ? N/A P23497 28436492
    105968 5py3:A (1.78) BS03 ZN ? N/A P23497 28436492
    105969 5py3:B (1.78) BS01 ZN ? N/A P23497 28436492
    105970 5py3:B (1.78) BS02 ZN ? N/A P23497 28436492
    105971 5py4:A (1.67) BS01 ZN ? N/A P23497 28436492
    105972 5py4:A (1.67) BS02 ZN ? N/A P23497 28436492
    105973 5py4:A (1.67) BS03 ZN ? N/A P23497 28436492
    105974 5py4:B (1.67) BS01 ZN ? N/A P23497 28436492
    105975 5py4:B (1.67) BS02 ZN ? N/A P23497 28436492
    105976 5py5:A (1.44) BS01 ZN ? N/A P23497 28436492
    105977 5py5:A (1.44) BS02 ZN ? N/A P23497 28436492
    105978 5py5:B (1.44) BS01 ZN ? N/A P23497 28436492
    105979 5py5:B (1.44) BS02 ZN ? N/A P23497 28436492
    105980 5py6:A (1.74) BS01 ZN ? N/A P23497 28436492
    105981 5py6:A (1.74) BS02 ZN ? N/A P23497 28436492
    105982 5py6:A (1.74) BS03 ZN ? N/A P23497 28436492
    105983 5py6:B (1.74) BS01 ZN ? N/A P23497 28436492
    105984 5py6:B (1.74) BS02 ZN ? N/A P23497 28436492
    105985 5py7:A (1.68) BS01 ZN ? N/A P23497 28436492
    105986 5py7:A (1.68) BS02 ZN ? N/A P23497 28436492
    105987 5py7:A (1.68) BS03 ZN ? N/A P23497 28436492
    105988 5py7:B (1.68) BS01 ZN ? N/A P23497 28436492
    105989 5py7:B (1.68) BS02 ZN ? N/A P23497 28436492
    105990 5py8:A (1.66) BS01 ZN ? N/A P23497 28436492
    105991 5py8:A (1.66) BS02 ZN ? N/A P23497 28436492
    105992 5py8:A (1.66) BS03 ZN ? N/A P23497 28436492
    105993 5py8:B (1.66) BS01 ZN ? N/A P23497 28436492
    105994 5py8:B (1.66) BS02 ZN ? N/A P23497 28436492
    105995 5py9:A (1.73) BS01 ZN ? N/A P23497 28436492
    105996 5py9:A (1.73) BS02 ZN ? N/A P23497 28436492
    105997 5py9:A (1.73) BS03 ZN ? N/A P23497 28436492
    105998 5py9:B (1.73) BS01 ZN ? N/A P23497 28436492
    105999 5py9:B (1.73) BS02 ZN ? N/A P23497 28436492
    106000 5pya:A (1.55) BS01 ZN ? N/A P23497 28436492
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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