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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    101401 5m2z:E (4.8) BS03 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... A0A0X8GJ44 30951555
    101402 5m2z:F (4.8) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... A0A0X8GJ44 30951555
    101403 5m2z:F (4.8) BS03 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... A0A0X8GJ44 30951555
    101404 5m3c:A (2.8) BS01 CA ? N/A Q9I5W1 30106221
    101405 5m3c:A (2.8) BS02 CA ? N/A Q9I5W1 30106221
    101406 5m3c:A (2.8) BS03 CA ? N/A Q9I5W1 30106221
    101407 5m3c:B (2.8) BS01 CA ? N/A Q9I5W1 30106221
    101408 5m3c:B (2.8) BS02 CA ? N/A Q9I5W1 30106221
    101409 5m3f:A (3.8) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 27842382
    101410 5m3f:A (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... P10964 27842382
    101411 5m3f:A (3.8) BS04 MG 2.7.7.6 GO:0000428 ... P10964 27842382
    101412 5m3f:B (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... P22138 27842382
    101413 5m3f:I (3.8) BS01 ZN ? GO:0000122 ... P32529 27842382
    101414 5m3f:J (3.8) BS01 ZN ? GO:0000428 ... P22139 27842382
    101415 5m3f:L (3.8) BS01 ZN ? GO:0000428 ... P40422 27842382
    101416 5m3k:B (2.83) BS01 ZN ? GO:0046872 ... Q4K419 30318713
    101417 5m3k:E (2.83) BS01 ZN ? GO:0046872 ... Q4K419 30318713
    101418 5m3m:A (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 27842382
    101419 5m3m:A (4.0) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 27842382
    101420 5m3m:B (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 27842382
    101421 5m3m:I (4.0) BS01 ZN ? GO:0000122 ... P32529 27842382
    101422 5m3m:I (4.0) BS02 ZN ? GO:0000122 ... P32529 27842382
    101423 5m3m:J (4.0) BS01 ZN ? GO:0000428 ... P22139 27842382
    101424 5m3m:L (4.0) BS01 ZN ? GO:0000428 ... P40422 27842382
    101425 5m3u:A (1.81) BS02 MG 2.7.2.3 GO:0004618 ... P00558 29995887
    101426 5m41:A (2.1) BS01 MG N/A N/A N/A 29093459
    101427 5m45:A (1.87) BS01 MN 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    101428 5m45:A (1.87) BS03 MG 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    101429 5m45:B (1.87) BS02 MG 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    101430 5m45:C (1.87) BS01 ZN 6.4.1.6 GO:0005524 ... Q8RM02 28775283
    101431 5m45:D (1.87) BS01 MN 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    101432 5m45:D (1.87) BS03 MG 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    101433 5m45:E (1.87) BS02 MG 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    101434 5m45:F (1.87) BS01 ZN 6.4.1.6 GO:0005524 ... Q8RM02 28775283
    101435 5m45:G (1.87) BS01 MN 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    101436 5m45:G (1.87) BS03 MG 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    101437 5m45:H (1.87) BS02 MG 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    101438 5m45:I (1.87) BS01 ZN 6.4.1.6 GO:0005524 ... Q8RM02 28775283
    101439 5m45:J (1.87) BS01 MN 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    101440 5m45:J (1.87) BS03 MG 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    101441 5m45:K (1.87) BS02 MG 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    101442 5m45:L (1.87) BS01 ZN 6.4.1.6 GO:0005524 ... Q8RM02 28775283
    101443 5m4g:A (1.48) BS01 MN 3.4.13.9 GO:0004181 ... P12955 28677335
    101444 5m4g:A (1.48) BS02 MN 3.4.13.9 GO:0004181 ... P12955 28677335
    101445 5m4g:B (1.48) BS01 MN 3.4.13.9 GO:0004181 ... P12955 28677335
    101446 5m4g:B (1.48) BS02 MN 3.4.13.9 GO:0004181 ... P12955 28677335
    101447 5m4l:A (1.49) BS01 MG 3.4.13.9 GO:0004181 ... P12955 28677335
    101448 5m4l:A (1.49) BS02 MG 3.4.13.9 GO:0004181 ... P12955 28677335
    101449 5m4l:B (1.49) BS01 MG 3.4.13.9 GO:0004181 ... P12955 28677335
    101450 5m4l:B (1.49) BS02 MG 3.4.13.9 GO:0004181 ... P12955 28677335
    101451 5m4o:B (2.1) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101452 5m4o:D (2.1) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101453 5m4o:F (2.1) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101454 5m4o:H (2.1) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101455 5m4q:A (1.73) BS01 MN 3.4.13.9 GO:0004181 ... P12955 28677335
    101456 5m4q:A (1.73) BS02 MN 3.4.13.9 GO:0004181 ... P12955 28677335
    101457 5m4q:B (1.73) BS01 MN 3.4.13.9 GO:0004181 ... P12955 28677335
    101458 5m4q:B (1.73) BS02 MN 3.4.13.9 GO:0004181 ... P12955 28677335
    101459 5m54:A (8.0) BS02 MG 3.6.5.- GO:0000226 ... P81947 28991265
    101460 5m54:D (8.0) BS02 MG 3.6.5.- GO:0000226 ... P81947 28991265
    101461 5m5f:E (1.33) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 28696673
    101462 5m5f:E (1.33) BS02 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    101463 5m5f:E (1.33) BS03 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    101464 5m5f:E (1.33) BS04 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    101465 5m5f:E (1.33) BS05 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    101466 5m5g:B (2.27) BS03 ZN ? GO:0006338 ... G0SDW4 28008037
    101467 5m5g:B (2.27) BS04 ZN ? GO:0006338 ... G0SDW4 28008037
    101468 5m5g:B (2.27) BS05 ZN ? GO:0006338 ... G0SDW4 28008037
    101469 5m5g:B (2.27) BS06 ZN ? GO:0006338 ... G0SDW4 28008037
    101470 5m5g:B (2.27) BS07 ZN ? GO:0006338 ... G0SDW4 28008037
    101471 5m5g:B (2.27) BS08 ZN ? GO:0006338 ... G0SDW4 28008037
    101472 5m5g:B (2.27) BS09 ZN ? GO:0006338 ... G0SDW4 28008037
    101473 5m5g:B (2.27) BS10 ZN ? GO:0006338 ... G0SDW4 28008037
    101474 5m5k:A (1.84) BS03 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    101475 5m5k:B (1.84) BS04 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    101476 5m5k:C (1.84) BS03 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    101477 5m5q:A (2.2) BS01 ZN 3.4.-.- GO:0008233 ... Q92905 27981705
    101478 5m5w:A (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... P10964 27867008
    101479 5m5w:A (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... P10964 27867008
    101480 5m5w:B (3.8) BS02 ZN 2.7.7.6 GO:0000428 ... P22138 27867008
    101481 5m5w:J (3.8) BS01 ZN ? GO:0000428 ... P22139 27867008
    101482 5m5w:L (3.8) BS01 ZN ? GO:0000428 ... P40422 27867008
    101483 5m5x:A (4.0) BS04 ZN 2.7.7.6 GO:0000428 ... P10964 27867008
    101484 5m5x:A (4.0) BS05 ZN 2.7.7.6 GO:0000428 ... P10964 27867008
    101485 5m5x:B (4.0) BS04 ZN 2.7.7.6 GO:0000428 ... P22138 27867008
    101486 5m5x:I (4.0) BS01 ZN ? GO:0000122 ... P32529 27867008
    101487 5m5x:J (4.0) BS01 ZN ? GO:0000428 ... P22139 27867008
    101488 5m5x:L (4.0) BS01 ZN ? GO:0000428 ... P40422 27867008
    101489 5m5y:A (4.0) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 27867008
    101490 5m5y:A (4.0) BS03 ZN 2.7.7.6 GO:0000428 ... P10964 27867008
    101491 5m5y:B (4.0) BS04 ZN 2.7.7.6 GO:0000428 ... P22138 27867008
    101492 5m5y:J (4.0) BS01 ZN ? GO:0000428 ... P22139 27867008
    101493 5m5y:L (4.0) BS01 ZN ? GO:0000428 ... P40422 27867008
    101494 5m62:A (1.7) BS01 CA ? N/A Q8VBX4 27903635
    101495 5m62:B (1.7) BS01 CA ? N/A Q8VBX4 27903635
    101496 5m64:A (4.6) BS04 ZN 2.7.7.6 GO:0000428 ... P10964 27867008
    101497 5m64:A (4.6) BS05 ZN 2.7.7.6 GO:0000428 ... P10964 27867008
    101498 5m64:B (4.6) BS04 ZN 2.7.7.6 GO:0000428 ... P22138 27867008
    101499 5m64:J (4.6) BS01 ZN ? GO:0000428 ... P22139 27867008
    101500 5m64:L (4.6) BS01 ZN ? GO:0000428 ... P40422 27867008
    101501 5m65:A (1.945) BS03 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    101502 5m65:B (1.945) BS04 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    101503 5m66:A (1.951) BS03 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    101504 5m66:B (1.951) BS04 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    101505 5m66:C (1.951) BS03 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    101506 5m66:D (1.951) BS04 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    101507 5m67:A (1.54) BS01 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    101508 5m67:B (1.54) BS02 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    101509 5m67:C (1.54) BS01 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    101510 5m67:D (1.54) BS02 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    101511 5m69:E (1.44) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 28696673
    101512 5m69:E (1.44) BS02 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    101513 5m69:E (1.44) BS03 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    101514 5m69:E (1.44) BS04 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    101515 5m69:E (1.44) BS05 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    101516 5m6b:A (3.25) BS01 CU 1.14.18.1 GO:0004497 ... C7FF05 28500345
    101517 5m6b:A (3.25) BS02 CU 1.14.18.1 GO:0004497 ... C7FF05 28500345
    101518 5m6b:B (3.25) BS01 CU 1.14.18.1 GO:0004497 ... C7FF05 28500345
    101519 5m6b:B (3.25) BS02 CU 1.14.18.1 GO:0004497 ... C7FF05 28500345
    101520 5m6b:C (3.25) BS01 CU 1.14.18.1 GO:0004497 ... C7FF05 28500345
    101521 5m6b:C (3.25) BS02 CU 1.14.18.1 GO:0004497 ... C7FF05 28500345
    101522 5m6b:D (3.25) BS01 CU 1.14.18.1 GO:0004497 ... C7FF05 28500345
    101523 5m6b:D (3.25) BS02 CU 1.14.18.1 GO:0004497 ... C7FF05 28500345
    101524 5m6c:A (3.0) BS01 CA ? GO:0003779 ... P84074 28398555
    101525 5m6c:A (3.0) BS02 CA ? GO:0003779 ... P84074 28398555
    101526 5m6c:A (3.0) BS03 CA ? GO:0003779 ... P84074 28398555
    101527 5m6c:E (3.0) BS01 CA ? GO:0003779 ... P84074 28398555
    101528 5m6c:E (3.0) BS02 CA ? GO:0003779 ... P84074 28398555
    101529 5m6c:E (3.0) BS03 CA ? GO:0003779 ... P84074 28398555
    101530 5m6d:A (2.0) BS01 CA 1.2.1.- GO:0000166 ... I6L8L9 28011643
    101531 5m6e:A (2.32) BS01 ZN 2.3.2.27 N/A P98170 28492317
    101532 5m6f:A (2.39) BS01 ZN 2.3.2.27 N/A P98170 28492317
    101533 5m6g:A (1.829) BS01 MG 3.2.1.21 GO:0004553 ... A4FNP6 N/A
    101534 5m6g:A (1.829) BS02 MG 3.2.1.21 GO:0004553 ... A4FNP6 N/A
    101535 5m6g:A (1.829) BS03 MG 3.2.1.21 GO:0004553 ... A4FNP6 N/A
    101536 5m6g:A (1.829) BS04 MG 3.2.1.21 GO:0004553 ... A4FNP6 N/A
    101537 5m6g:A (1.829) BS05 MG 3.2.1.21 GO:0004553 ... A4FNP6 N/A
    101538 5m6h:A (2.5) BS01 ZN 2.3.2.27 N/A P98170 28492317
    101539 5m6l:A (2.61) BS01 ZN 2.3.2.27 N/A P98170 28492317
    101540 5m6m:A (2.37) BS01 ZN 2.3.2.27 N/A P98170 28492317
    101541 5m6n:A (1.8) BS01 ZN 2.3.2.27 N/A Q13490 28492317
    101542 5m6n:B (1.8) BS01 ZN 2.3.2.27 N/A Q13490 28492317
    101543 5m6x:B (2.4) BS01 MG 3.6.5.2 GO:0000902 ... P61586 28498638
    101544 5m6x:I (2.4) BS01 MG 3.6.5.2 GO:0000902 ... P61586 28498638
    101545 5m6z:A (1.67) BS02 MG 2.7.2.3 GO:0004618 ... P00558 29995887
    101546 5m70:B (2.2) BS01 MG 3.6.5.2 GO:0000902 ... P61586 28498638
    101547 5m70:G (2.2) BS01 MG 3.6.5.2 GO:0000902 ... P61586 28498638
    101548 5m78:A (1.077) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32235320
    101549 5m79:A (1.3) BS01 MN 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 N/A
    101550 5m7b:A (1.5) BS01 MN 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 N/A
    101551 5m7c:A (1.6) BS01 MN 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 N/A
    101552 5m7c:B (1.6) BS01 MN 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 N/A
    101553 5m7d:A (1.2) BS01 MN 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 N/A
    101554 5m7e:A (2.046) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    101555 5m7e:C (2.046) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    101556 5m7g:A (2.248) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    101557 5m7g:C (2.248) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    101558 5m7j:B (3.5) BS07 FE2 ? GO:0009772 ... P06009 28248658
    101559 5m7j:C (3.5) BS05 FE2 ? GO:0009772 ... P06010 28248658
    101560 5m7k:B (3.5) BS08 FE2 ? GO:0009772 ... P06009 28248658
    101561 5m7k:C (3.5) BS07 FE2 ? GO:0009772 ... P06010 28248658
    101562 5m7l:B (3.6) BS08 FE2 ? GO:0009772 ... P06009 28248658
    101563 5m7l:C (3.6) BS07 FE2 ? GO:0009772 ... P06010 28248658
    101564 5m7m:A (2.7) BS03 ZN 3.1.4.39 GO:0003676 ... Q13822 28731719
    101565 5m7m:A (2.7) BS04 ZN 3.1.4.39 GO:0003676 ... Q13822 28731719
    101566 5m7m:A (2.7) BS05 ZN 3.1.4.39 GO:0003676 ... Q13822 28731719
    101567 5m7n:A (2.9) BS01 MG N/A GO:0000160 ... N/A 28088479
    101568 5m7n:B (2.9) BS02 MG N/A GO:0000160 ... N/A 28088479
    101569 5m7o:A (2.2) BS01 MG N/A GO:0000160 ... N/A 28088479
    101570 5m7o:B (2.2) BS01 MG N/A GO:0000160 ... N/A 28088479
    101571 5m7p:A (2.36) BS01 MG N/A GO:0000160 ... N/A 28088479
    101572 5m7p:B (2.36) BS01 MG N/A GO:0000160 ... N/A 28088479
    101573 5m86:A (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    101574 5m86:B (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    101575 5m86:C (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    101576 5m86:D (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    101577 5m86:E (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    101578 5m86:F (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    101579 5m86:G (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    101580 5m86:H (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    101581 5m86:I (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    101582 5m86:J (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    101583 5m8b:A (1.9) BS01 MG ? GO:0004553 ... A0A5B7Y0Z3 N/A
    101584 5m8b:B (1.9) BS01 MG ? GO:0004553 ... A0A5B7Y0Z3 N/A
    101585 5m8d:A (2.25) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    101586 5m8d:C (2.25) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    101587 5m8d:F (2.25) BS01 MG N/A GO:0036211 ... N/A 28276440
    101588 5m8e:A (2.0) BS01 CA 3.2.1.55 GO:0004553 ... A0A0D1M7L2 28485897
    101589 5m8e:B (2.0) BS01 CA 3.2.1.55 GO:0004553 ... A0A0D1M7L2 28485897
    101590 5m8g:A (2.147) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    101591 5m8g:C (2.147) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    101592 5m8g:F (2.147) BS01 MG N/A GO:0036211 ... N/A 28276440
    101593 5m8l:A (2.35) BS02 ZN 1.14.18.- GO:0016491 ... P17643 28661582
    101594 5m8l:A (2.35) BS03 ZN 1.14.18.- GO:0016491 ... P17643 28661582
    101595 5m8l:A (2.35) BS04 ZN 1.14.18.- GO:0016491 ... P17643 28661582
    101596 5m8l:B (2.35) BS01 ZN 1.14.18.- GO:0016491 ... P17643 28661582
    101597 5m8l:B (2.35) BS02 ZN 1.14.18.- GO:0016491 ... P17643 28661582
    101598 5m8l:B (2.35) BS03 ZN 1.14.18.- GO:0016491 ... P17643 28661582
    101599 5m8l:C (2.35) BS02 ZN 1.14.18.- GO:0016491 ... P17643 28661582
    101600 5m8l:C (2.35) BS03 ZN 1.14.18.- GO:0016491 ... P17643 28661582
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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