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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 1azd:C (3.0) BS01 CA ? GO:0005537 ... P55915 9094437
    802 1azd:C (3.0) BS02 MN ? GO:0005537 ... P55915 9094437
    803 1azd:D (3.0) BS01 CA ? GO:0005537 ... P55915 9094437
    804 1azd:D (3.0) BS02 MN ? GO:0005537 ... P55915 9094437
    805 1azm:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 7932756
    806 1azn:A (2.6) BS01 CU ? GO:0005507 ... P00282 15299318
    807 1azn:B (2.6) BS01 CU ? GO:0005507 ... P00282 15299318
    808 1azn:C (2.6) BS01 CU ? GO:0005507 ... P00282 15299318
    809 1azn:D (2.6) BS01 CU ? GO:0005507 ... P00282 15299318
    810 1azr:A (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    811 1azr:B (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    812 1azr:C (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    813 1azr:D (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    814 1azs:C (2.3) BS01 MG ? GO:0003924 ... P04896 9417641
    815 1azt:A (2.3) BS01 MG ? GO:0003924 ... P04896 9395396
    816 1azt:B (2.3) BS01 MG ? GO:0003924 ... P04896 9395396
    817 1azu:A (2.7) BS01 CU ? GO:0005507 ... P00282 N/A
    818 1azv:A (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9541385
    819 1azv:A (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9541385
    820 1azv:B (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9541385
    821 1azv:B (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9541385
    822 1b06:A (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    823 1b06:B (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    824 1b06:C (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    825 1b06:D (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    826 1b06:E (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    827 1b06:F (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    828 1b08:A (2.3) BS01 CA ? N/A P35247 10368295
    829 1b08:A (2.3) BS02 CA ? N/A P35247 10368295
    830 1b08:A (2.3) BS03 CA ? N/A P35247 10368295
    831 1b08:B (2.3) BS01 CA ? N/A P35247 10368295
    832 1b08:B (2.3) BS02 CA ? N/A P35247 10368295
    833 1b08:B (2.3) BS03 CA ? N/A P35247 10368295
    834 1b08:C (2.3) BS01 CA ? N/A P35247 10368295
    835 1b08:C (2.3) BS02 CA ? N/A P35247 10368295
    836 1b08:C (2.3) BS03 CA ? N/A P35247 10368295
    837 1b09:A (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    838 1b09:A (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    839 1b09:B (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    840 1b09:B (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    841 1b09:C (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    842 1b09:C (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    843 1b09:D (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    844 1b09:D (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    845 1b09:E (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    846 1b09:E (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    847 1b0e:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 9651152
    848 1b0i:A (2.4) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9862804
    849 1b0l:A (2.2) BS01 FE 3.4.21.- GO:0001503 ... P02788 10089347
    850 1b0l:A (2.2) BS02 FE 3.4.21.- GO:0001503 ... P02788 10089347
    851 1b0n:A (1.9) BS01 ZN ? GO:0003677 ... P06533 9799632
    852 1b0n:A (1.9) BS02 ZN ? GO:0003677 ... P06533 9799632
    853 1b0n:A (1.9) BS03 ZN ? GO:0003677 ... P06533 9799632
    854 1b0n:B (1.9) BS01 ZN ? GO:0006355 ... P23308 9799632
    855 1b0p:A (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    856 1b0p:A (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    857 1b0p:B (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    858 1b0p:B (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    859 1b13:A (1.5) BS01 FE ? GO:0005506 ... P00268 10216292
    860 1b1b:A (2.6) BS01 ZN ? GO:0003677 ... P9WMH1 9887269
    861 1b1b:A (2.6) BS02 ZN ? GO:0003677 ... P9WMH1 9887269
    862 1b1g:A (-1.00) BS01 CA ? GO:0005499 ... P02633 9390401
    863 1b1g:A (-1.00) BS02 CA ? GO:0005499 ... P02633 9390401
    864 1b1x:A (2.62) BS01 FE 3.4.21.- GO:0001503 ... O77811 10366507
    865 1b1x:A (2.62) BS02 FE 3.4.21.- GO:0001503 ... O77811 10366507
    866 1b23:P (2.6) BS03 MG ? GO:0003746 ... Q01698 10368282
    867 1b2j:A (1.6) BS01 FE ? GO:0005506 ... P00268 10216292
    868 1b2l:A (1.6) BS01 CA 1.1.1.1 GO:0004022 ... P10807 10366509
    869 1b2o:A (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    870 1b2o:B (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    871 1b2y:A (3.2) BS05 CA 3.2.1.1 GO:0003824 ... P04746 10657258
    872 1b2z:C (2.03) BS01 ZN 3.1.27.- GO:0003723 ... P00648 11914482
    873 1b38:A (2.0) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    874 1b39:A (2.1) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    875 1b3d:A (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    876 1b3d:A (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    877 1b3d:A (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    878 1b3d:A (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    879 1b3d:A (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    880 1b3d:B (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    881 1b3d:B (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    882 1b3d:B (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    883 1b3d:B (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    884 1b3d:B (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    885 1b3e:A (2.5) BS01 FE ? GO:0005576 ... P02787 10029548
    886 1b3i:A (-1.00) BS01 CU1 1.10.99.1 GO:0005507 ... P50057 10213601
    887 1b47:A (2.2) BS01 CA 2.3.2.27 GO:0001784 ... P22681 10078535
    888 1b47:B (2.2) BS01 CA 2.3.2.27 GO:0001784 ... P22681 10078535
    889 1b47:C (2.2) BS01 CA 2.3.2.27 GO:0001784 ... P22681 10078535
    890 1b4e:A (2.0) BS01 ZN 4.2.1.24 GO:0000287 ... P0ACB2 10194344
    891 1b4e:A (2.0) BS02 ZN 4.2.1.24 GO:0000287 ... P0ACB2 10194344
    892 1b4l:A (1.8) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    893 1b4l:A (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    894 1b4n:A (2.4) BS01 CA 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    895 1b4n:B (2.4) BS01 CA 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    896 1b4n:C (2.4) BS01 CA 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    897 1b4n:D (2.4) BS01 CA 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    898 1b4t:A (1.8) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    899 1b4t:A (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    900 1b4u:B (2.2) BS01 FE 1.13.11.8 GO:0008198 ... P22636 10467151
    901 1b4u:D (2.2) BS01 FE 1.13.11.8 GO:0008198 ... P22636 10467151
    902 1b55:A (2.4) BS01 ZN 2.7.10.2 GO:0035556 ... Q06187 10196129
    903 1b55:B (2.4) BS01 ZN 2.7.10.2 GO:0035556 ... Q06187 10196129
    904 1b57:A (2.0) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 10080900
    905 1b57:A (2.0) BS02 ZN 4.1.2.13 GO:0004332 ... P0AB71 10080900
    906 1b57:A (2.0) BS03 ZN 4.1.2.13 GO:0004332 ... P0AB71 10080900
    907 1b57:B (2.0) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 10080900
    908 1b57:B (2.0) BS02 ZN 4.1.2.13 GO:0004332 ... P0AB71 10080900
    909 1b57:B (2.0) BS03 ZN 4.1.2.13 GO:0004332 ... P0AB71 10080900
    910 1b59:A (1.8) BS01 CO 3.4.11.18 GO:0006508 ... P50579 9812898
    911 1b59:A (1.8) BS02 CO 3.4.11.18 GO:0006508 ... P50579 9812898
    912 1b62:A (2.1) BS01 MG ? GO:0005524 ... P23367 10199405
    913 1b66:A (1.9) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 10024455
    914 1b66:B (1.9) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 10024455
    915 1b6a:A (1.6) BS01 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    916 1b6a:A (1.6) BS02 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    917 1b6s:A (2.5) BS01 MG 6.3.4.18 GO:0004638 ... P09029 10569930
    918 1b6s:B (2.5) BS01 MG 6.3.4.18 GO:0004638 ... P09029 10569930
    919 1b6s:C (2.5) BS01 MG 6.3.4.18 GO:0004638 ... P09029 10569930
    920 1b6s:D (2.5) BS01 MG 6.3.4.18 GO:0004638 ... P09029 10569930
    921 1b6z:A (2.0) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 10024455
    922 1b6z:B (2.0) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 10024455
    923 1b71:A (1.9) BS01 FE ? GO:0005506 ... P24931 10201393
    924 1b71:A (1.9) BS02 FE ? GO:0005506 ... P24931 10201393
    925 1b71:A (1.9) BS03 ZN ? GO:0005506 ... P24931 10201393
    926 1b7t:A (2.5) BS01 MG ? GO:0003774 ... P24733 10338210
    927 1b7t:Y (2.5) BS01 MG ? GO:0005509 ... P13543 10338210
    928 1b7t:Z (2.5) BS01 CA ? GO:0005509 ... P07291 10338210
    929 1b7z:A (2.7) BS01 FE 3.4.21.- GO:0001503 ... O77811 10531474
    930 1b7z:A (2.7) BS02 FE 3.4.21.- GO:0001503 ... O77811 10531474
    931 1b80:A (1.73) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    932 1b80:A (1.73) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    933 1b80:B (1.73) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    934 1b80:B (1.73) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    935 1b82:A (1.8) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    936 1b82:A (1.8) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    937 1b82:B (1.8) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    938 1b82:B (1.8) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    939 1b85:A (1.85) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    940 1b85:A (1.85) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    941 1b85:B (1.85) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    942 1b85:B (1.85) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    943 1b8a:A (1.9) BS01 MN 6.1.1.12 GO:0000166 ... Q52428 9724658
    944 1b8a:B (1.9) BS01 MN 6.1.1.12 GO:0000166 ... Q52428 9724658
    945 1b8c:A (2.0) BS01 MG ? GO:0005509 ... P02618 10545326
    946 1b8c:B (2.0) BS01 MG ? GO:0005509 ... P02618 10545326
    947 1b8j:A (1.9) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    948 1b8j:A (1.9) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    949 1b8j:A (1.9) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10085061
    950 1b8j:B (1.9) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    951 1b8j:B (1.9) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    952 1b8j:B (1.9) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10085061
    953 1b8l:A (1.7) BS01 CA ? GO:0005509 ... P02618 10545326
    954 1b8r:A (1.9) BS01 CA ? GO:0005509 ... P02618 10545326
    955 1b8r:A (1.9) BS02 CA ? GO:0005509 ... P02618 10545326
    956 1b8t:A (-1.00) BS01 ZN ? GO:0001725 ... P67966 10231520
    957 1b8t:A (-1.00) BS02 ZN ? GO:0001725 ... P67966 10231520
    958 1b8t:A (-1.00) BS03 ZN ? GO:0001725 ... P67966 10231520
    959 1b8t:A (-1.00) BS04 ZN ? GO:0001725 ... P67966 10231520
    960 1b8y:A (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    961 1b8y:A (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    962 1b8y:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    963 1b8y:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    964 1b8y:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    965 1b90:A (2.5) BS02 CA 3.2.1.2 GO:0000272 ... P36924 10353816
    966 1b94:A (1.9) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10446231
    967 1b94:B (1.9) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10446231
    968 1b9a:A (2.0) BS01 CA ? GO:0005509 ... P02618 10545326
    969 1b9a:A (2.0) BS02 CA ? GO:0005509 ... P02618 10545326
    970 1b9o:A (1.15) BS01 CA ? GO:0000139 ... P00709 10080897
    971 1b9s:A (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    972 1b9t:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    973 1b9v:A (2.35) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    974 1b9z:A (2.1) BS09 CA 3.2.1.2 GO:0000272 ... P36924 10353816
    975 1ba9:A (-1.00) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 9718300
    976 1ba9:A (-1.00) BS02 CU1 1.15.1.1 GO:0000302 ... P00441 9718300
    977 1bag:A (2.5) BS06 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    978 1bag:A (2.5) BS07 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    979 1bag:A (2.5) BS08 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    980 1bav:A (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    981 1bav:B (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    982 1bav:C (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    983 1bav:D (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    984 1baw:A (2.8) BS01 CU ? GO:0005507 ... Q51883 10089349
    985 1baw:A (2.8) BS02 ZN ? GO:0005507 ... Q51883 10089349
    986 1baw:B (2.8) BS01 CU ? GO:0005507 ... Q51883 10089349
    987 1baw:B (2.8) BS02 ZN ? GO:0005507 ... Q51883 10089349
    988 1baw:C (2.8) BS01 CU ? GO:0005507 ... Q51883 10089349
    989 1baw:C (2.8) BS02 ZN ? GO:0005507 ... Q51883 10089349
    990 1bbo:A (-1.00) BS01 ZN ? N/A P15822 1567844
    991 1bbo:A (-1.00) BS02 ZN ? N/A P15822 1567844
    992 1bc0:A (2.0) BS01 CA ? GO:0001786 ... P14668 9609693
    993 1bc0:A (2.0) BS02 CA ? GO:0001786 ... P14668 9609693
    994 1bc0:A (2.0) BS03 CA ? GO:0001786 ... P14668 9609693
    995 1bc0:A (2.0) BS04 CA ? GO:0001786 ... P14668 9609693
    996 1bc0:A (2.0) BS05 CA ? GO:0001786 ... P14668 9609693
    997 1bc1:A (2.05) BS01 CA ? GO:0001786 ... P14668 9609693
    998 1bc1:A (2.05) BS02 CA ? GO:0001786 ... P14668 9609693
    999 1bc1:A (2.05) BS03 CA ? GO:0001786 ... P14668 9609693
    1000 1bc1:A (2.05) BS04 CA ? GO:0001786 ... P14668 9609693
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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