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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9601 1mxu:A (1.8) BS01 ZN ? GO:0015276 ... P19491 12731861
    9602 1mxu:B (1.8) BS01 ZN ? GO:0015276 ... P19491 12731861
    9603 1mxu:B (1.8) BS02 ZN ? GO:0015276 ... P19491 12731861
    9604 1mxu:C (1.8) BS01 ZN ? GO:0015276 ... P19491 12731861
    9605 1mxv:A (1.95) BS01 ZN ? GO:0015276 ... P19491 12731861
    9606 1mxv:B (1.95) BS01 ZN ? GO:0015276 ... P19491 12731861
    9607 1mxv:B (1.95) BS02 ZN ? GO:0015276 ... P19491 12731861
    9608 1mxv:C (1.95) BS01 ZN ? GO:0015276 ... P19491 12731861
    9609 1mxw:A (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9610 1mxw:B (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9611 1mxw:B (1.9) BS02 ZN ? GO:0015276 ... P19491 12731861
    9612 1mxw:C (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9613 1mxx:A (2.0) BS01 ZN ? GO:0015276 ... P19491 12731861
    9614 1mxx:B (2.0) BS01 ZN ? GO:0015276 ... P19491 12731861
    9615 1mxx:B (2.0) BS02 ZN ? GO:0015276 ... P19491 12731861
    9616 1mxy:A (1.95) BS01 ZN ? GO:0015276 ... P19491 12731861
    9617 1mxy:B (1.95) BS01 ZN ? GO:0015276 ... P19491 12731861
    9618 1mxy:B (1.95) BS02 ZN ? GO:0015276 ... P19491 12731861
    9619 1mxz:A (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9620 1mxz:B (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9621 1mxz:B (1.9) BS02 ZN ? GO:0015276 ... P19491 12731861
    9622 1mxz:C (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9623 1my0:A (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9624 1my0:B (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9625 1my0:B (1.9) BS02 ZN ? GO:0015276 ... P19491 12731861
    9626 1my0:C (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9627 1my1:A (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9628 1my1:B (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9629 1my1:B (1.9) BS02 ZN ? GO:0015276 ... P19491 12731861
    9630 1my1:C (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9631 1my2:A (1.8) BS01 ZN ? GO:0015276 ... P19491 12731861
    9632 1my2:B (1.8) BS01 ZN ? GO:0015276 ... P19491 12731861
    9633 1my2:B (1.8) BS02 ZN ? GO:0015276 ... P19491 12731861
    9634 1my2:C (1.8) BS01 ZN ? GO:0015276 ... P19491 12731861
    9635 1my3:A (1.75) BS01 ZN ? GO:0015276 ... P19491 12731861
    9636 1my3:B (1.75) BS01 ZN ? GO:0015276 ... P19491 12731861
    9637 1my3:B (1.75) BS02 ZN ? GO:0015276 ... P19491 12731861
    9638 1my4:A (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9639 1my4:B (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    9640 1my4:B (1.9) BS02 ZN ? GO:0015276 ... P19491 12731861
    9641 1my6:A (1.6) BS01 FE 1.15.1.1 GO:0004784 ... Q8DIR2 12827458
    9642 1my6:B (1.6) BS01 FE 1.15.1.1 GO:0004784 ... Q8DIR2 12827458
    9643 1myp:C (3.0) BS01 CA 1.11.2.2 GO:0004601 ... P05164 1320128
    9644 1myp:D (3.0) BS01 CA 1.11.2.2 GO:0004601 ... P05164 1320128
    9645 1myr:A (1.64) BS01 ZN 3.2.1.147 GO:0004553 ... P29736 9195886
    9646 1mz8:B (2.0) BS01 ZN 3.1.-.- GO:0004519 ... Q47112 12441392
    9647 1mz8:D (2.0) BS01 ZN 3.1.-.- GO:0004519 ... Q47112 12441392
    9648 1mzb:A (1.8) BS01 ZN ? GO:0000976 ... Q03456 12581348
    9649 1mzb:A (1.8) BS02 ZN ? GO:0000976 ... Q03456 12581348
    9650 1mzb:A (1.8) BS03 ZN ? GO:0000976 ... Q03456 12581348
    9651 1mzc:B (2.0) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 12825937
    9652 1mze:A (2.2) BS01 FE2 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 12432100
    9653 1mzf:A (2.4) BS01 FE2 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 12432100
    9654 1mzy:A (1.46) BS01 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    9655 1mzy:A (1.46) BS02 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    9656 1mzy:A (1.46) BS03 MG 1.7.2.1 GO:0005507 ... Q53239 N/A
    9657 1mzz:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    9658 1mzz:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    9659 1mzz:B (2.0) BS01 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    9660 1mzz:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    9661 1mzz:C (2.0) BS01 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    9662 1mzz:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    9663 1n04:A (2.8) BS02 FE ? GO:0005506 ... P02789 14501117
    9664 1n04:A (2.8) BS03 FE ? GO:0005506 ... P02789 14501117
    9665 1n0h:A (2.8) BS01 MG 2.2.1.6 GO:0000287 ... P07342 14557277
    9666 1n0h:B (2.8) BS03 MG 2.2.1.6 GO:0000287 ... P07342 14557277
    9667 1n0j:A (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 1394426
    9668 1n0j:B (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 1394426
    9669 1n0n:A (1.82) BS01 MN 1.15.1.1 GO:0004784 ... P04179 N/A
    9670 1n0n:B (1.82) BS01 MN 1.15.1.1 GO:0004784 ... P04179 N/A
    9671 1n0w:A (1.7) BS01 MG ? GO:0000150 ... Q06609 12442171
    9672 1n0z:A (-1.00) BS01 ZN ? N/A O95218 12657633
    9673 1n18:A (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    9674 1n18:A (2.0) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12441104
    9675 1n18:B (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    9676 1n18:B (2.0) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12441104
    9677 1n18:C (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    9678 1n18:C (2.0) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12441104
    9679 1n18:D (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    9680 1n18:D (2.0) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12441104
    9681 1n18:E (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    9682 1n18:E (2.0) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12441104
    9683 1n18:F (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    9684 1n18:F (2.0) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12441104
    9685 1n18:G (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    9686 1n18:G (2.0) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12441104
    9687 1n18:H (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    9688 1n18:H (2.0) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12441104
    9689 1n18:I (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    9690 1n18:I (2.0) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12441104
    9691 1n18:J (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    9692 1n18:J (2.0) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12441104
    9693 1n19:A (1.86) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    9694 1n19:A (1.86) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12441104
    9695 1n19:B (1.86) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    9696 1n19:B (1.86) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12441104
    9697 1n1b:A (2.0) BS01 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9698 1n1b:B (2.0) BS01 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9699 1n1h:A (2.8) BS02 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    9700 1n1h:A (2.8) BS03 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    9701 1n1l:A (2.6) BS03 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P27958 12465917
    9702 1n1l:B (2.6) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P27958 12465917
    9703 1n1p:A (0.95) BS01 MN 1.1.3.6
    5.3.3.1
    GO:0004769 ... P12676 14558826
    9704 1n1z:A (2.3) BS01 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9705 1n1z:A (2.3) BS02 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9706 1n1z:A (2.3) BS03 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9707 1n1z:B (2.3) BS01 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9708 1n1z:B (2.3) BS02 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9709 1n1z:B (2.3) BS03 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9710 1n20:A (2.3) BS01 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9711 1n20:A (2.3) BS02 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9712 1n20:A (2.3) BS03 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9713 1n20:B (2.3) BS01 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9714 1n20:B (2.3) BS02 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9715 1n20:B (2.3) BS03 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9716 1n21:A (3.1) BS01 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9717 1n21:A (3.1) BS02 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9718 1n21:A (3.1) BS03 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9719 1n22:A (2.4) BS01 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9720 1n22:A (2.4) BS02 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9721 1n22:A (2.4) BS03 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9722 1n22:B (2.4) BS01 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9723 1n22:B (2.4) BS02 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9724 1n22:B (2.4) BS03 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9725 1n22:B (2.4) BS04 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9726 1n23:A (2.4) BS01 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9727 1n23:A (2.4) BS02 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9728 1n23:A (2.4) BS03 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9729 1n23:B (2.4) BS01 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9730 1n23:B (2.4) BS02 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9731 1n23:B (2.4) BS03 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9732 1n24:A (2.3) BS01 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9733 1n24:A (2.3) BS02 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9734 1n24:A (2.3) BS03 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9735 1n24:B (2.3) BS01 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9736 1n24:B (2.3) BS02 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9737 1n24:B (2.3) BS03 MG 4.2.3.116
    4.2.3.121
    5.5.1.8
    GO:0000287 ... O81192 12432096
    9738 1n25:A (2.8) BS01 ZN 3.6.4.- GO:0003677 ... P03070 12774115
    9739 1n25:B (2.8) BS01 ZN 3.6.4.- GO:0003677 ... P03070 12774115
    9740 1n28:A (1.5) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12501175
    9741 1n28:A (1.5) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12501175
    9742 1n28:B (1.5) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12501175
    9743 1n28:B (1.5) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12501175
    9744 1n29:A (2.6) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12501175
    9745 1n29:A (2.6) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12501175
    9746 1n2c:B (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P07329 9163420
    9747 1n2c:B (3.0) BS03 CA 1.18.6.1 GO:0005524 ... P07329 9163420
    9748 1n2c:D (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P07329 9163420
    9749 1n2c:D (3.0) BS02 CA 1.18.6.1 GO:0005524 ... P07329 9163420
    9750 1n2c:E (3.0) BS01 MG 1.18.6.1 GO:0005524 ... P00459 9163420
    9751 1n2c:F (3.0) BS02 MG 1.18.6.1 GO:0005524 ... P00459 9163420
    9752 1n2c:G (3.0) BS01 MG 1.18.6.1 GO:0005524 ... P00459 9163420
    9753 1n2c:H (3.0) BS03 MG 1.18.6.1 GO:0005524 ... P00459 9163420
    9754 1n2k:A (2.75) BS01 CA 3.1.6.8 GO:0004065 ... P15289 12888274
    9755 1n2l:A (3.2) BS01 CA 3.1.6.8 GO:0004065 ... P15289 12888274
    9756 1n2n:A (2.4) BS01 ZN 1.14.13.39 GO:0004517 ... P29477 12464241
    9757 1n2v:A (2.1) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 12646024
    9758 1n32:D (3.0) BS02 MG ? GO:0003723 ... P80373 12464183
    9759 1n32:E (3.0) BS02 MG ? GO:0003723 ... Q5SHQ5 12464183
    9760 1n32:L (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 12464183
    9761 1n32:M (3.0) BS02 MG ? GO:0000049 ... P80377 12464183
    9762 1n33:D (3.35) BS02 ZN ? GO:0003723 ... P80373 12464183
    9763 1n33:L (3.35) BS02 MG ? GO:0000049 ... Q5SHN3 12464183
    9764 1n33:N (3.35) BS02 ZN ? GO:0003735 ... P0DOY6 12464183
    9765 1n34:D (3.8) BS02 ZN ? GO:0003723 ... P80373 12464183
    9766 1n34:N (3.8) BS02 ZN ? GO:0003735 ... P0DOY6 12464183
    9767 1n35:A (2.5) BS03 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    9768 1n35:A (2.5) BS04 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    9769 1n36:D (3.65) BS02 ZN ? GO:0003723 ... P80373 12464183
    9770 1n38:A (2.8) BS03 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    9771 1n38:A (2.8) BS04 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    9772 1n3o:A (2.0) BS02 MN ? GO:0030246 ... Q8GSD2 12595543
    9773 1n3o:A (2.0) BS03 CA ? GO:0030246 ... Q8GSD2 12595543
    9774 1n3o:B (2.0) BS02 MN ? GO:0030246 ... Q8GSD2 12595543
    9775 1n3o:B (2.0) BS03 CA ? GO:0030246 ... Q8GSD2 12595543
    9776 1n3p:A (2.1) BS03 MN ? GO:0030246 ... Q8GSD2 12595543
    9777 1n3p:A (2.1) BS04 CA ? GO:0030246 ... Q8GSD2 12595543
    9778 1n3p:B (2.1) BS03 MN ? GO:0030246 ... Q8GSD2 12595543
    9779 1n3p:B (2.1) BS04 CA ? GO:0030246 ... Q8GSD2 12595543
    9780 1n3q:A (2.2) BS03 MN ? GO:0030246 ... Q8GSD2 12595543
    9781 1n3q:A (2.2) BS04 CA ? GO:0030246 ... Q8GSD2 12595543
    9782 1n3q:B (2.2) BS03 MN ? GO:0030246 ... Q8GSD2 12595543
    9783 1n3q:B (2.2) BS04 CA ? GO:0030246 ... Q8GSD2 12595543
    9784 1n41:A (2.1) BS01 CA ? GO:0001786 ... P14668 12401794
    9785 1n41:A (2.1) BS02 CA ? GO:0001786 ... P14668 12401794
    9786 1n41:A (2.1) BS03 CA ? GO:0001786 ... P14668 12401794
    9787 1n41:A (2.1) BS04 CA ? GO:0001786 ... P14668 12401794
    9788 1n41:A (2.1) BS05 CA ? GO:0001786 ... P14668 12401794
    9789 1n42:A (2.1) BS01 CA ? GO:0001786 ... P14668 12401794
    9790 1n42:A (2.1) BS02 CA ? GO:0001786 ... P14668 12401794
    9791 1n42:A (2.1) BS03 CA ? GO:0001786 ... P14668 12401794
    9792 1n42:A (2.1) BS04 CA ? GO:0001786 ... P14668 12401794
    9793 1n42:A (2.1) BS05 CA ? GO:0001786 ... P14668 12401794
    9794 1n44:A (3.0) BS01 CA ? GO:0001786 ... P14668 12401794
    9795 1n44:A (3.0) BS02 CA ? GO:0001786 ... P14668 12401794
    9796 1n47:A (2.7) BS02 CA ? GO:0030246 ... P56625 12586347
    9797 1n47:A (2.7) BS03 MN ? GO:0030246 ... P56625 12586347
    9798 1n47:B (2.7) BS02 CA ? GO:0030246 ... P56625 12586347
    9799 1n47:B (2.7) BS03 MN ? GO:0030246 ... P56625 12586347
    9800 1n47:C (2.7) BS01 CA ? GO:0030246 ... P56625 12586347

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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