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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9201 1mcx:A (2.03) BS03 CA ? GO:0001786 ... P19619 12595246
    9202 1mcx:A (2.03) BS04 CA ? GO:0001786 ... P19619 12595246
    9203 1mcx:A (2.03) BS05 CA ? GO:0001786 ... P19619 12595246
    9204 1mcx:A (2.03) BS06 CA ? GO:0001786 ... P19619 12595246
    9205 1mcx:A (2.03) BS07 CA ? GO:0001786 ... P19619 12595246
    9206 1mcx:A (2.03) BS08 CA ? GO:0001786 ... P19619 12595246
    9207 1mcz:A (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9208 1mcz:A (2.8) BS02 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9209 1mcz:B (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9210 1mcz:B (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9211 1mcz:C (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9212 1mcz:C (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9213 1mcz:D (2.8) BS03 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9214 1mcz:D (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9215 1mcz:E (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9216 1mcz:F (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9217 1mcz:F (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9218 1mcz:G (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9219 1mcz:G (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9220 1mcz:H (2.8) BS03 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9221 1mcz:I (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9222 1mcz:I (2.8) BS02 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9223 1mcz:J (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9224 1mcz:J (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9225 1mcz:K (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9226 1mcz:K (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9227 1mcz:L (2.8) BS03 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9228 1mcz:L (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9229 1mcz:M (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9230 1mcz:N (2.8) BS03 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9231 1mcz:O (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9232 1mcz:P (2.8) BS03 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9233 1mcz:P (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    9234 1mda:A (2.5) BS01 CU ? GO:0005507 ... P22364 1599920
    9235 1mda:B (2.5) BS01 CU ? GO:0005507 ... P22364 1599920
    9236 1mdl:A (1.85) BS01 MG 5.1.2.2 GO:0000287 ... P11444 7893690
    9237 1mdr:A (2.1) BS01 MG 5.1.2.2 GO:0000287 ... P11444 8292591
    9238 1mdu:A (2.2) BS01 CA ? GO:0051015 ... P06396 12356759
    9239 1mdu:A (2.2) BS02 CA ? GO:0051015 ... P06396 12356759
    9240 1mdu:D (2.2) BS01 CA ? GO:0051015 ... P06396 12356759
    9241 1mdu:D (2.2) BS02 CA ? GO:0051015 ... P06396 12356759
    9242 1mdw:A (1.95) BS01 CA 3.4.22.53 GO:0004198 ... Q07009 12665854
    9243 1mdw:A (1.95) BS02 CA 3.4.22.53 GO:0004198 ... Q07009 12665854
    9244 1mdw:B (1.95) BS01 CA 3.4.22.53 GO:0004198 ... Q07009 12665854
    9245 1mdw:B (1.95) BS02 CA 3.4.22.53 GO:0004198 ... Q07009 12665854
    9246 1me9:A (2.2) BS01 K 1.1.1.205 GO:0000166 ... P50097 12559919
    9247 1mee:A (2.0) BS01 CA 3.4.21.62 GO:0004252 ... P07518 1793542
    9248 1mee:A (2.0) BS02 CA 3.4.21.62 GO:0004252 ... P07518 1793542
    9249 1meh:A (1.95) BS01 K 1.1.1.205 GO:0000166 ... P50097 12559919
    9250 1mei:A (2.2) BS01 K 1.1.1.205 GO:0000166 ... P50097 12559919
    9251 1mew:A (2.15) BS01 K 1.1.1.205 GO:0000166 ... P50097 12559919
    9252 1mey:C (2.2) BS04 ZN N/A N/A N/A 8901872
    9253 1mey:C (2.2) BS05 ZN N/A N/A N/A 8901872
    9254 1mey:C (2.2) BS06 ZN N/A N/A N/A 8901872
    9255 1mey:F (2.2) BS03 ZN N/A N/A N/A 8901872
    9256 1mey:F (2.2) BS04 ZN N/A N/A N/A 8901872
    9257 1mey:F (2.2) BS05 ZN N/A N/A N/A 8901872
    9258 1mez:A (2.4) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12186864
    9259 1mf0:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12186864
    9260 1mf4:A (1.9) BS02 CA 3.1.1.4 GO:0004623 ... P60045 14529280
    9261 1mf8:B (3.1) BS01 CA 3.1.3.16 GO:0001569 ... P63098 12357034
    9262 1mf8:B (3.1) BS02 CA 3.1.3.16 GO:0001569 ... P63098 12357034
    9263 1mf8:B (3.1) BS03 CA 3.1.3.16 GO:0001569 ... P63098 12357034
    9264 1mf8:B (3.1) BS04 CA 3.1.3.16 GO:0001569 ... P63098 12357034
    9265 1mfm:A (1.02) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 10329151
    9266 1mfm:A (1.02) BS02 CU 1.15.1.1 GO:0000302 ... P00441 10329151
    9267 1mfm:A (1.02) BS03 CD 1.15.1.1 GO:0000302 ... P00441 10329151
    9268 1mfm:A (1.02) BS04 CD 1.15.1.1 GO:0000302 ... P00441 10329151
    9269 1mfm:A (1.02) BS05 CD 1.15.1.1 GO:0000302 ... P00441 10329151
    9270 1mfr:A (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9271 1mfr:A (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9272 1mfr:B (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9273 1mfr:B (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9274 1mfr:C (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9275 1mfr:C (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9276 1mfr:D (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9277 1mfr:D (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9278 1mfr:E (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9279 1mfr:E (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9280 1mfr:F (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9281 1mfr:F (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9282 1mfr:G (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9283 1mfr:G (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9284 1mfr:H (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9285 1mfr:H (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9286 1mfr:I (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9287 1mfr:I (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9288 1mfr:J (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9289 1mfr:J (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9290 1mfr:K (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9291 1mfr:K (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9292 1mfr:L (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9293 1mfr:L (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9294 1mfr:M (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9295 1mfr:M (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9296 1mfr:N (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9297 1mfr:N (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9298 1mfr:O (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9299 1mfr:O (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9300 1mfr:P (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9301 1mfr:P (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9302 1mfr:Q (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9303 1mfr:Q (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9304 1mfr:R (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9305 1mfr:R (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9306 1mfr:S (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9307 1mfr:S (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9308 1mfr:T (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9309 1mfr:T (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9310 1mfr:U (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9311 1mfr:U (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9312 1mfr:V (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9313 1mfr:V (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9314 1mfr:W (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9315 1mfr:W (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9316 1mfr:X (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9317 1mfr:X (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    9318 1mfs:A (-1.00) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P35963 9641983
    9319 1mfs:A (-1.00) BS02 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P35963 9641983
    9320 1mft:A (2.5) BS01 ZN N/A GO:0016491 ... N/A 15713492
    9321 1mft:B (2.5) BS01 ZN N/A GO:0016491 ... N/A 15713492
    9322 1mfu:A (2.0) BS12 CA 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    9323 1mfv:A (2.0) BS08 CA 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    9324 1mg0:A (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    9325 1mg0:A (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    9326 1mg0:B (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    9327 1mg0:B (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    9328 1mg0:C (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    9329 1mg0:C (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    9330 1mg0:D (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    9331 1mg0:D (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    9332 1mg2:C (2.25) BS01 CU ? GO:0005507 ... P22364 12437349
    9333 1mg2:G (2.25) BS01 CU ? GO:0005507 ... P22364 12437349
    9334 1mg2:K (2.25) BS01 CU ? GO:0005507 ... P22364 12437349
    9335 1mg2:O (2.25) BS01 CU ? GO:0005507 ... P22364 12437349
    9336 1mg3:C (2.4) BS01 CU ? GO:0005507 ... P22364 12437349
    9337 1mg3:G (2.4) BS01 CU ? GO:0005507 ... P22364 12437349
    9338 1mg3:K (2.4) BS01 CU ? GO:0005507 ... P22364 12437349
    9339 1mg3:O (2.4) BS01 CU ? GO:0005507 ... P22364 12437349
    9340 1mgo:A (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    9341 1mgo:A (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    9342 1mgo:B (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    9343 1mgo:B (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    9344 1mh1:A (1.38) BS01 MG 3.6.5.2 GO:0001764 ... P63000 9033596
    9345 1mh2:A (2.7) BS01 ZN 3.1.1.4 GO:0004623 ... P60043 N/A
    9346 1mh9:A (1.8) BS02 MG 3.1.3.- GO:0008253 ... Q9NPB1 12352955
    9347 1mhl:C (2.25) BS03 CA 1.11.2.2 GO:0004601 ... P05164 7840679
    9348 1mhl:D (2.25) BS03 CA 1.11.2.2 GO:0004601 ... P05164 7840679
    9349 1mho:A (2.0) BS01 CA ? GO:0005509 ... P02638 9519413
    9350 1mho:A (2.0) BS02 CA ? GO:0005509 ... P02638 9519413
    9351 1mhp:A (2.8) BS01 MN ? N/A P18614 12662928
    9352 1mhp:B (2.8) BS01 MN ? N/A P18614 12662928
    9353 1mhy:D (2.0) BS01 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    9354 1mhy:D (2.0) BS02 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    9355 1mhz:D (2.7) BS01 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    9356 1mhz:D (2.7) BS02 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    9357 1mih:A (2.7) BS01 MN ? GO:0000156 ... P0AE67 12591865
    9358 1mih:B (2.7) BS01 MN ? GO:0000156 ... P0AE67 12591865
    9359 1mio:B (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    9360 1mio:B (3.0) BS03 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    9361 1mio:D (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    9362 1mio:D (3.0) BS02 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    9363 1miy:A (3.52) BS01 MG 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    9364 1mj2:B (2.4) BS05 CA ? GO:0003677 ... P0A8U6 10986458
    9365 1mjg:M (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    9366 1mjg:N (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    9367 1mjg:O (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    9368 1mjg:P (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    9369 1mji:A (2.5) BS03 MG ? GO:0000049 ... P41201 12515387
    9370 1mji:B (2.5) BS03 MG ? GO:0000049 ... P41201 12515387
    9371 1mjn:A (1.3) BS01 MG ? N/A P20701 12526797
    9372 1mjo:B (2.1) BS04 CA ? GO:0003677 ... P0A8U6 10986458
    9373 1mkd:A (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    9374 1mkd:B (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    9375 1mkd:C (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    9376 1mkd:D (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    9377 1mkd:E (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    9378 1mkd:F (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    9379 1mkd:G (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    9380 1mkd:H (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    9381 1mkd:I (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    9382 1mkd:J (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    9383 1mkd:K (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    9384 1mkd:K (2.9) BS02 MG 3.1.4.53 GO:0004114 ... Q08499 12387865
    9385 1mkd:L (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    9386 1mkm:A (2.2) BS01 ZN ? GO:0003677 ... Q9WXS0 11877432
    9387 1mks:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 9115986
    9388 1mkt:A (1.72) BS01 CA 3.1.1.4 GO:0002227 ... P00593 9761901
    9389 1mku:A (1.8) BS01 CA 3.1.1.4 GO:0002227 ... P00593 9115986
    9390 1mkv:A (1.89) BS01 CA 3.1.1.4 GO:0002227 ... P00593 9761900
    9391 1ml9:A (1.98) BS01 ZN 2.1.1.355 GO:0003690 ... Q8X225 12372305
    9392 1ml9:A (1.98) BS02 ZN 2.1.1.355 GO:0003690 ... Q8X225 12372305
    9393 1ml9:A (1.98) BS03 ZN 2.1.1.355 GO:0003690 ... Q8X225 12372305
    9394 1mlw:A (1.71) BS01 FE 1.14.16.4 GO:0004497 ... P17752 12379098
    9395 1mm2:A (-1.00) BS01 ZN 3.6.4.12 N/A Q14839 12842043
    9396 1mm2:A (-1.00) BS02 ZN 3.6.4.12 N/A Q14839 12842043
    9397 1mm3:A (-1.00) BS01 ZN 3.6.4.12 N/A Q14839 12842043
    9398 1mm3:A (-1.00) BS02 ZN 3.6.4.12 N/A Q14839 12842043
    9399 1mm7:A (1.65) BS01 ZN ? GO:0015276 ... P19491 12501192
    9400 1mm7:B (1.65) BS01 ZN ? GO:0015276 ... P19491 12501192
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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