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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 1ajb:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8746724
    402 1ajb:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 8746724
    403 1ajb:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 8746724
    404 1ajb:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8746724
    405 1ajb:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 8746724
    406 1ajb:B (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 8746724
    407 1ajc:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    408 1ajc:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    409 1ajc:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 7577993
    410 1ajc:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    411 1ajc:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    412 1ajc:B (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 7577993
    413 1ajd:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    414 1ajd:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    415 1ajd:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 7577993
    416 1ajd:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    417 1ajd:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    418 1ajd:B (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 7577993
    419 1ajj:A (1.7) BS01 CA ? N/A P01130 9262405
    420 1ajk:A (1.8) BS01 CA 3.2.1.73 GO:0004553 ... P23904 9489923
    421 1ajk:B (1.8) BS01 CA 3.2.1.73 GO:0004553 ... P23904 9489923
    422 1ajn:B (2.36) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    423 1ajo:A (2.07) BS01 CA 3.2.1.73 GO:0004553 ... P23904 9489923
    424 1ajo:B (2.07) BS01 CA 3.2.1.73 GO:0004553 ... P23904 9489923
    425 1ajp:B (2.31) BS02 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    426 1ajq:B (2.05) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    427 1ajy:A (-1.00) BS01 ZN ? GO:0000981 ... P25502 9303003
    428 1ajy:A (-1.00) BS02 ZN ? GO:0000981 ... P25502 9303003
    429 1ajy:B (-1.00) BS01 ZN ? GO:0000981 ... P25502 9303003
    430 1ajy:B (-1.00) BS02 ZN ? GO:0000981 ... P25502 9303003
    431 1ak0:A (1.8) BS01 ZN 3.1.30.1 GO:0003676 ... P24289 9726413
    432 1ak0:A (1.8) BS02 ZN 3.1.30.1 GO:0003676 ... P24289 9726413
    433 1ak0:A (1.8) BS03 ZN 3.1.30.1 GO:0003676 ... P24289 9726413
    434 1ak0:A (1.8) BS04 ZN 3.1.30.1 GO:0003676 ... P24289 9726413
    435 1ak8:A (-1.00) BS01 CE ? GO:0005509 ... P62157 9305950
    436 1ak8:A (-1.00) BS02 CE ? GO:0005509 ... P62157 9305950
    437 1ak9:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    438 1ak9:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    439 1akl:A (2.0) BS01 ZN 3.4.24.40 GO:0001869 ... Q03023 8690704
    440 1akl:A (2.0) BS02 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    441 1akl:A (2.0) BS03 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    442 1akl:A (2.0) BS04 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    443 1akl:A (2.0) BS05 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    444 1akl:A (2.0) BS06 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    445 1akl:A (2.0) BS07 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    446 1akl:A (2.0) BS08 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    447 1akl:A (2.0) BS09 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    448 1aks:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15299934
    449 1ala:A (2.25) BS01 CA ? GO:0001786 ... P17153 8471604
    450 1ala:A (2.25) BS02 CA ? GO:0001786 ... P17153 8471604
    451 1ala:A (2.25) BS03 CA ? GO:0001786 ... P17153 8471604
    452 1alc:A (1.7) BS01 CA ? GO:0003796 ... P12065 2769757
    453 1alh:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7703848
    454 1alh:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7703848
    455 1ali:A (2.2) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8520475
    456 1ali:A (2.2) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 8520475
    457 1ali:A (2.2) BS03 MG 3.1.3.1 GO:0000287 ... P00634 8520475
    458 1ali:B (2.2) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8520475
    459 1ali:B (2.2) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 8520475
    460 1ali:B (2.2) BS03 MG 3.1.3.1 GO:0000287 ... P00634 8520475
    461 1alj:A (2.6) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8520475
    462 1alj:A (2.6) BS02 MG 3.1.3.1 GO:0000287 ... P00634 8520475
    463 1alj:B (2.6) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8520475
    464 1alj:B (2.6) BS02 MG 3.1.3.1 GO:0000287 ... P00634 8520475
    465 1alk:A (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 2010919
    466 1alk:A (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 2010919
    467 1alk:A (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 2010919
    468 1alk:B (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 2010919
    469 1alk:B (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 2010919
    470 1alk:B (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 2010919
    471 1aln:A (2.3) BS01 ZN 3.5.4.5 GO:0001884 ... P0ABF6 8634261
    472 1alv:A (1.9) BS01 CA ? GO:0005509 ... P04574 9228946
    473 1alv:A (1.9) BS02 CA ? GO:0005509 ... P04574 9228946
    474 1alv:A (1.9) BS03 CA ? GO:0005509 ... P04574 9228946
    475 1alv:A (1.9) BS04 CA ? GO:0005509 ... P04574 9228946
    476 1alv:B (1.9) BS01 CA ? GO:0005509 ... P04574 9228946
    477 1alv:B (1.9) BS02 CA ? GO:0005509 ... P04574 9228946
    478 1alv:B (1.9) BS03 CA ? GO:0005509 ... P04574 9228946
    479 1alv:B (1.9) BS04 CA ? GO:0005509 ... P04574 9228946
    480 1alw:A (2.03) BS01 CA ? GO:0005509 ... P04574 9228946
    481 1alw:A (2.03) BS02 CA ? GO:0005509 ... P04574 9228946
    482 1alw:A (2.03) BS03 CA ? GO:0005509 ... P04574 9228946
    483 1alw:A (2.03) BS04 CA ? GO:0005509 ... P04574 9228946
    484 1alw:B (2.03) BS01 CA ? GO:0005509 ... P04574 9228946
    485 1alw:B (2.03) BS02 CA ? GO:0005509 ... P04574 9228946
    486 1alw:B (2.03) BS03 CA ? GO:0005509 ... P04574 9228946
    487 1alw:B (2.03) BS04 CA ? GO:0005509 ... P04574 9228946
    488 1am4:D (2.7) BS01 MG 3.6.5.2 GO:0000139 ... P60953 9262406
    489 1am4:E (2.7) BS01 MG 3.6.5.2 GO:0000139 ... P60953 9262406
    490 1am4:F (2.7) BS01 MG 3.6.5.2 GO:0000139 ... P60953 9262406
    491 1am6:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    492 1amh:A (2.5) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10429182
    493 1amh:B (2.5) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10429182
    494 1amp:A (1.8) BS01 ZN 3.4.11.10 GO:0006508 ... Q01693 8087555
    495 1amp:A (1.8) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 8087555
    496 1amu:B (1.9) BS01 MG 5.1.1.11 N/A P0C061 9250661
    497 1amy:A (2.8) BS01 CA 3.2.1.1 GO:0004556 ... P04063 8196040
    498 1amy:A (2.8) BS02 CA 3.2.1.1 GO:0004556 ... P04063 8196040
    499 1amy:A (2.8) BS03 CA 3.2.1.1 GO:0004556 ... P04063 8196040
    500 1an1:E (2.03) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9384562
    501 1anb:A (2.8) BS01 CA 3.4.21.4 GO:0004252 ... P00763 1554694
    502 1anc:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 1554694
    503 1and:A (2.3) BS01 CU 3.4.21.4 GO:0004252 ... P00763 8448149
    504 1ani:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    505 1ani:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    506 1ani:A (2.5) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    507 1ani:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    508 1ani:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    509 1ani:B (2.5) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    510 1anj:A (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    511 1anj:A (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    512 1anj:A (2.3) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    513 1anj:B (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    514 1anj:B (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    515 1anj:B (2.3) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    516 1ann:A (2.3) BS01 CA ? GO:0001786 ... P13214 N/A
    517 1ann:A (2.3) BS02 CA ? GO:0001786 ... P13214 N/A
    518 1anv:A (2.7) BS01 ZN ? GO:0003677 ... P03265 15299602
    519 1anv:A (2.7) BS02 ZN ? GO:0003677 ... P03265 15299602
    520 1anw:A (2.4) BS01 CA ? GO:0001786 ... P08758 1446685
    521 1anw:A (2.4) BS02 CA ? GO:0001786 ... P08758 1446685
    522 1anw:B (2.4) BS01 CA ? GO:0001786 ... P08758 1446685
    523 1anw:B (2.4) BS02 CA ? GO:0001786 ... P08758 1446685
    524 1anx:A (1.9) BS01 CA ? GO:0001786 ... P08758 8254674
    525 1anx:A (1.9) BS02 CA ? GO:0001786 ... P08758 8254674
    526 1anx:A (1.9) BS03 CA ? GO:0001786 ... P08758 8254674
    527 1anx:A (1.9) BS04 CA ? GO:0001786 ... P08758 8254674
    528 1anx:B (1.9) BS01 CA ? GO:0001786 ... P08758 8254674
    529 1anx:B (1.9) BS02 CA ? GO:0001786 ... P08758 8254674
    530 1anx:B (1.9) BS03 CA ? GO:0001786 ... P08758 8254674
    531 1anx:B (1.9) BS04 CA ? GO:0001786 ... P08758 8254674
    532 1anx:C (1.9) BS01 CA ? GO:0001786 ... P08758 8254674
    533 1anx:C (1.9) BS02 CA ? GO:0001786 ... P08758 8254674
    534 1anx:C (1.9) BS03 CA ? GO:0001786 ... P08758 8254674
    535 1anx:C (1.9) BS04 CA ? GO:0001786 ... P08758 8254674
    536 1ao0:A (2.8) BS01 MG 2.4.2.14 GO:0000287 ... P00497 9271502
    537 1ao0:B (2.8) BS02 MG 2.4.2.14 GO:0000287 ... P00497 9271502
    538 1ao0:C (2.8) BS01 MG 2.4.2.14 GO:0000287 ... P00497 9271502
    539 1ao0:D (2.8) BS02 MG 2.4.2.14 GO:0000287 ... P00497 9271502
    540 1aoo:A (-1.00) BS01 AG N/A GO:0005507 ... N/A 8566237
    541 1aoo:A (-1.00) BS02 AG N/A GO:0005507 ... N/A 8566237
    542 1aoo:A (-1.00) BS03 AG N/A GO:0005507 ... N/A 8566237
    543 1aoo:A (-1.00) BS04 AG N/A GO:0005507 ... N/A 8566237
    544 1aoo:A (-1.00) BS05 AG N/A GO:0005507 ... N/A 8566237
    545 1aoo:A (-1.00) BS06 AG N/A GO:0005507 ... N/A 8566237
    546 1aoo:A (-1.00) BS07 AG N/A GO:0005507 ... N/A 8566237
    547 1aor:A (2.3) BS01 FE 1.2.7.5 GO:0009055 ... Q51739 7878465
    548 1aor:B (2.3) BS01 FE 1.2.7.5 GO:0009055 ... Q51739 7878465
    549 1aox:A (2.1) BS01 MG ? N/A P17301 9353312
    550 1aox:B (2.1) BS01 MG ? N/A P17301 9353312
    551 1aoz:A (1.9) BS01 CU 1.10.3.3 GO:0005507 ... P37064 1548698
    552 1aoz:B (1.9) BS01 CU 1.10.3.3 GO:0005507 ... P37064 1548698
    553 1ap4:A (-1.00) BS01 CA ? GO:0005509 ... P63316 9315850
    554 1ap5:A (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    555 1ap5:B (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    556 1ap6:A (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    557 1ap6:B (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    558 1aq2:A (1.9) BS01 MN 4.1.1.49 GO:0000287 ... P22259 9406547
    559 1aq8:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    560 1aq8:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    561 1aq8:B (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    562 1aq8:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    563 1aq8:C (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    564 1aq8:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    565 1aqb:A (1.65) BS01 CD ? GO:0005501 ... P27485 9757135
    566 1aqf:A (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 9308890
    567 1aqf:B (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 9308890
    568 1aqf:C (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 9308890
    569 1aqf:D (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 9308890
    570 1aqf:F (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 9308890
    571 1aqf:G (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 9308890
    572 1aqf:H (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 9308890
    573 1aqh:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9541387
    574 1aqm:A (1.85) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9541387
    575 1aqn:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    576 1aqn:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    577 1aqp:A (2.0) BS01 CU 4.6.1.18 GO:0003676 ... P61823 9275172
    578 1aqp:A (2.0) BS02 CU 4.6.1.18 GO:0003676 ... P61823 9275172
    579 1aqq:A (-1.00) BS01 AG N/A GO:0005507 ... N/A 8566237
    580 1aqq:A (-1.00) BS02 AG N/A GO:0005507 ... N/A 8566237
    581 1aqq:A (-1.00) BS03 AG N/A GO:0005507 ... N/A 8566237
    582 1aqq:A (-1.00) BS04 AG N/A GO:0005507 ... N/A 8566237
    583 1aqq:A (-1.00) BS05 AG N/A GO:0005507 ... N/A 8566237
    584 1aqq:A (-1.00) BS06 AG N/A GO:0005507 ... N/A 8566237
    585 1aqq:A (-1.00) BS07 AG N/A GO:0005507 ... N/A 8566237
    586 1aqr:A (-1.00) BS01 CU1 N/A GO:0005507 ... N/A 8566237
    587 1aqr:A (-1.00) BS02 CU1 N/A GO:0005507 ... N/A 8566237
    588 1aqr:A (-1.00) BS03 CU1 N/A GO:0005507 ... N/A 8566237
    589 1aqr:A (-1.00) BS04 CU1 N/A GO:0005507 ... N/A 8566237
    590 1aqr:A (-1.00) BS05 CU1 N/A GO:0005507 ... N/A 8566237
    591 1aqs:A (-1.00) BS01 CU1 N/A GO:0005507 ... N/A 8566237
    592 1aqs:A (-1.00) BS02 CU1 N/A GO:0005507 ... N/A 8566237
    593 1aqs:A (-1.00) BS03 CU1 N/A GO:0005507 ... N/A 8566237
    594 1aqs:A (-1.00) BS04 CU1 N/A GO:0005507 ... N/A 8566237
    595 1aqs:A (-1.00) BS05 CU1 N/A GO:0005507 ... N/A 8566237
    596 1aqs:A (-1.00) BS06 CU1 N/A GO:0005507 ... N/A 8566237
    597 1aqs:A (-1.00) BS07 CU1 N/A GO:0005507 ... N/A 8566237
    598 1ar1:A (2.7) BS01 CU 7.1.1.9 GO:0004129 ... P98002 9380672
    599 1ar1:A (2.7) BS02 MG 7.1.1.9 GO:0004129 ... P98002 9380672
    600 1ar1:A (2.7) BS03 CA 7.1.1.9 GO:0004129 ... P98002 9380672
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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