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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 1a8a:A (1.9) BS02 CA ? GO:0001786 ... P14668 7583670
    202 1a8a:A (1.9) BS03 CA ? GO:0001786 ... P14668 7583670
    203 1a8a:A (1.9) BS04 CA ? GO:0001786 ... P14668 7583670
    204 1a8a:A (1.9) BS05 CA ? GO:0001786 ... P14668 7583670
    205 1a8a:A (1.9) BS06 CA ? GO:0001786 ... P14668 7583670
    206 1a8a:A (1.9) BS07 CA ? GO:0001786 ... P14668 7583670
    207 1a8a:A (1.9) BS08 CA ? GO:0001786 ... P14668 7583670
    208 1a8a:A (1.9) BS09 CA ? GO:0001786 ... P14668 7583670
    209 1a8a:A (1.9) BS10 CA ? GO:0001786 ... P14668 7583670
    210 1a8b:A (1.9) BS01 CA ? GO:0001786 ... P14668 7583670
    211 1a8b:A (1.9) BS02 CA ? GO:0001786 ... P14668 7583670
    212 1a8b:A (1.9) BS03 CA ? GO:0001786 ... P14668 7583670
    213 1a8b:A (1.9) BS04 CA ? GO:0001786 ... P14668 7583670
    214 1a8b:A (1.9) BS05 CA ? GO:0001786 ... P14668 7583670
    215 1a8b:A (1.9) BS06 CA ? GO:0001786 ... P14668 7583670
    216 1a8b:A (1.9) BS07 CA ? GO:0001786 ... P14668 7583670
    217 1a8b:A (1.9) BS08 CA ? GO:0001786 ... P14668 7583670
    218 1a8b:A (1.9) BS09 CA ? GO:0001786 ... P14668 7583670
    219 1a8e:A (1.6) BS02 FE ? GO:0005576 ... P02787 9609685
    220 1a8f:A (1.8) BS02 FE ? GO:0005576 ... P02787 9609685
    221 1a8h:A (2.0) BS01 ZN 6.1.1.10 GO:0000166 ... P23395 10673435
    222 1a8t:A (2.55) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 9545432
    223 1a8t:A (2.55) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 9545432
    224 1a8t:B (2.55) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 9545432
    225 1a8t:B (2.55) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 9545432
    226 1a8v:A (2.0) BS01 CU 3.6.4.- GO:0003676 ... P0AG30 10230401
    227 1a8v:B (2.0) BS01 CU 3.6.4.- GO:0003676 ... P0AG30 10230401
    228 1a8z:A (2.1) BS01 CU1 ? GO:0005507 ... P0C918 9761859
    229 1a9x:A (1.8) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 9636022
    230 1a9x:A (1.8) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 9636022
    231 1a9x:A (1.8) BS04 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 9636022
    232 1a9x:C (1.8) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 9636022
    233 1a9x:C (1.8) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 9636022
    234 1a9x:C (1.8) BS04 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 9636022
    235 1a9x:E (1.8) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 9636022
    236 1a9x:E (1.8) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 9636022
    237 1a9x:E (1.8) BS04 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 9636022
    238 1a9x:G (1.8) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 9636022
    239 1a9x:G (1.8) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 9636022
    240 1a9x:G (1.8) BS04 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 9636022
    241 1aa1:B (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    242 1aa1:E (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    243 1aa1:H (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    244 1aa1:L (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    245 1aa9:A (-1.00) BS01 MG 3.6.5.2 GO:0000139 ... P01112 9230043
    246 1aac:A (1.31) BS01 CU ? GO:0005507 ... P22364 15299631
    247 1aaf:A (-1.00) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P05961 1304355
    248 1aaf:A (-1.00) BS02 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P05961 1304355
    249 1aan:A (2.0) BS01 CU ? GO:0005507 ... P22364 8495197
    250 1aay:A (1.6) BS03 ZN ? N/A P08046 8939742
    251 1aay:A (1.6) BS04 ZN ? N/A P08046 8939742
    252 1aay:A (1.6) BS05 ZN ? N/A P08046 8939742
    253 1acc:A (2.1) BS01 CA ? GO:0005515 ... P13423 9039918
    254 1acc:A (2.1) BS02 CA ? GO:0005515 ... P13423 9039918
    255 1acm:B (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 1303763
    256 1acm:D (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 1303763
    257 1ad5:A (2.6) BS01 CA 2.7.10.2 GO:0004672 ... P08631 9024658
    258 1ad5:A (2.6) BS03 CA 2.7.10.2 GO:0004672 ... P08631 9024658
    259 1ad5:B (2.6) BS01 CA 2.7.10.2 GO:0004672 ... P08631 9024658
    260 1ad5:B (2.6) BS02 CA 2.7.10.2 GO:0004672 ... P08631 9024658
    261 1adb:A (2.4) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    262 1adb:A (2.4) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    263 1adb:B (2.4) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    264 1adb:B (2.4) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    265 1adc:A (2.7) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    266 1adc:A (2.7) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    267 1adc:B (2.7) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    268 1adc:B (2.7) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    269 1add:A (2.4) BS01 ZN 3.5.4.4 GO:0000255 ... P03958 8439534
    270 1adf:A (2.9) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 8286346
    271 1adf:A (2.9) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 8286346
    272 1adg:A (2.7) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 8286346
    273 1adn:A (-1.00) BS01 ZN 2.1.1.63
    2.1.1.n11
    GO:0003677 ... P06134 8260490
    274 1adu:A (3.0) BS01 ZN ? GO:0003677 ... P03265 8632448
    275 1adu:A (3.0) BS02 ZN ? GO:0003677 ... P03265 8632448
    276 1adu:B (3.0) BS01 ZN ? GO:0003677 ... P03265 8632448
    277 1adu:B (3.0) BS02 ZN ? GO:0003677 ... P03265 8632448
    278 1adv:A (3.2) BS01 ZN ? GO:0003677 ... P03265 8632448
    279 1adv:A (3.2) BS02 ZN ? GO:0003677 ... P03265 8632448
    280 1adv:B (3.2) BS01 ZN ? GO:0003677 ... P03265 8632448
    281 1adv:B (3.2) BS02 ZN ? GO:0003677 ... P03265 8632448
    282 1adw:A (2.5) BS01 CU ? GO:0005507 ... P80401 7583671
    283 1adw:B (2.5) BS01 CU ? GO:0005507 ... P80401 7583671
    284 1aei:A (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    285 1aei:A (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    286 1aei:A (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    287 1aei:A (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    288 1aei:B (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    289 1aei:B (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    290 1aei:B (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    291 1aei:B (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    292 1aei:C (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    293 1aei:C (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    294 1aei:C (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    295 1aei:C (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    296 1aei:D (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    297 1aei:D (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    298 1aei:D (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    299 1aei:D (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    300 1aei:E (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    301 1aei:E (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    302 1aei:E (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    303 1aei:E (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    304 1aei:F (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    305 1aei:F (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    306 1aei:F (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    307 1aei:F (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    308 1aex:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    309 1af0:A (1.8) BS01 ZN 3.4.24.40 GO:0001907 ... P23694 N/A
    310 1af0:A (1.8) BS02 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    311 1af0:A (1.8) BS03 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    312 1af0:A (1.8) BS04 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    313 1af0:A (1.8) BS05 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    314 1af0:A (1.8) BS06 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    315 1af0:A (1.8) BS07 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    316 1af0:A (1.8) BS08 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    317 1af2:A (2.3) BS01 ZN 3.5.4.5 GO:0001884 ... P0ABF6 9125497
    318 1af4:A (2.6) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9113975
    319 1afa:1 (2.0) BS02 CA ? N/A P19999 8636086
    320 1afa:1 (2.0) BS03 CA ? N/A P19999 8636086
    321 1afa:2 (2.0) BS02 CA ? N/A P19999 8636086
    322 1afa:2 (2.0) BS03 CA ? N/A P19999 8636086
    323 1afa:2 (2.0) BS04 CA ? N/A P19999 8636086
    324 1afa:3 (2.0) BS02 CA ? N/A P19999 8636086
    325 1afa:3 (2.0) BS03 CA ? N/A P19999 8636086
    326 1afb:1 (1.9) BS01 CA ? N/A P19999 8636086
    327 1afb:1 (1.9) BS02 CA ? N/A P19999 8636086
    328 1afb:2 (1.9) BS01 CA ? N/A P19999 8636086
    329 1afb:2 (1.9) BS02 CA ? N/A P19999 8636086
    330 1afb:2 (1.9) BS03 CA ? N/A P19999 8636086
    331 1afb:3 (1.9) BS01 CA ? N/A P19999 8636086
    332 1afb:3 (1.9) BS02 CA ? N/A P19999 8636086
    333 1afd:1 (2.0) BS01 CA ? N/A P19999 8636086
    334 1afd:1 (2.0) BS02 CA ? N/A P19999 8636086
    335 1afd:2 (2.0) BS01 CA ? N/A P19999 8636086
    336 1afd:2 (2.0) BS02 CA ? N/A P19999 8636086
    337 1afd:3 (2.0) BS01 CA ? N/A P19999 8636086
    338 1afd:3 (2.0) BS02 CA ? N/A P19999 8636086
    339 1afj:A (-1.00) BS01 HG ? GO:0015097 ... P04129 9188683
    340 1afr:A (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    341 1afr:A (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    342 1afr:B (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    343 1afr:B (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    344 1afr:C (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    345 1afr:C (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    346 1afr:D (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    347 1afr:D (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    348 1afr:E (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    349 1afr:E (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    350 1afr:F (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    351 1afr:F (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    352 1ag0:A (2.4) BS01 CU ? GO:0005507 ... P00282 N/A
    353 1ag0:B (2.4) BS01 CU ? GO:0005507 ... P00282 N/A
    354 1ag6:A (1.6) BS01 CU ? GO:0005507 ... P00289 9792096
    355 1ag9:A (1.8) BS01 CA ? GO:0000166 ... P61949 9416602
    356 1ag9:B (1.8) BS01 CA ? GO:0000166 ... P61949 9416602
    357 1agn:A (3.0) BS01 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    358 1agn:A (3.0) BS02 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    359 1agn:B (3.0) BS01 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    360 1agn:B (3.0) BS02 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    361 1agn:C (3.0) BS01 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    362 1agn:C (3.0) BS02 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    363 1agn:D (3.0) BS01 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    364 1agn:D (3.0) BS02 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    365 1agn:D (3.0) BS03 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    366 1agp:A (2.3) BS01 MG 3.6.5.2 GO:0003924 ... P01112 8357792
    367 1agr:A (2.8) BS01 MG ? GO:0000287 ... P10824 9108480
    368 1agr:D (2.8) BS01 MG ? GO:0000287 ... P10824 9108480
    369 1ah7:A (1.501) BS01 ZN 3.1.4.3 GO:0004629 ... P09598 2493587
    370 1ah7:A (1.501) BS02 ZN 3.1.4.3 GO:0004629 ... P09598 2493587
    371 1ah7:A (1.501) BS03 ZN 3.1.4.3 GO:0004629 ... P09598 2493587
    372 1ahj:A (2.65) BS01 FE 4.2.1.84 GO:0003824 ... P13448 9195885
    373 1ahj:C (2.65) BS01 FE 4.2.1.84 GO:0003824 ... P13448 9195885
    374 1ahj:E (2.65) BS01 FE 4.2.1.84 GO:0003824 ... P13448 9195885
    375 1ahj:G (2.65) BS01 FE 4.2.1.84 GO:0003824 ... P13448 9195885
    376 1ahr:A (1.8) BS01 CA ? GO:0005509 ... P62149 9195880
    377 1ahr:A (1.8) BS02 CA ? GO:0005509 ... P62149 9195880
    378 1ahr:A (1.8) BS03 CA ? GO:0005509 ... P62149 9195880
    379 1ahr:A (1.8) BS04 CA ? GO:0005509 ... P62149 9195880
    380 1ai4:B (2.35) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    381 1ai5:B (2.36) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    382 1ai6:B (2.55) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    383 1ai7:B (2.5) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    384 1aig:L (2.6) BS06 FE2 ? GO:0009772 ... P0C0Y8 9115209
    385 1aig:M (2.6) BS04 FE2 ? GO:0009772 ... P0C0Y9 9115209
    386 1aig:N (2.6) BS06 FE2 ? GO:0009772 ... P0C0Y8 9115209
    387 1aig:O (2.6) BS04 FE2 ? GO:0009772 ... P0C0Y9 9115209
    388 1aih:C (2.5) BS01 MG 2.7.7.-
    3.1.-.-
    GO:0003677 ... P21442 9108478
    389 1aii:A (1.95) BS01 CA ? GO:0001786 ... P12429 9111038
    390 1aii:A (1.95) BS02 CA ? GO:0001786 ... P12429 9111038
    391 1aii:A (1.95) BS03 CA ? GO:0001786 ... P12429 9111038
    392 1aii:A (1.95) BS04 CA ? GO:0001786 ... P12429 9111038
    393 1aii:A (1.95) BS05 CA ? GO:0001786 ... P12429 9111038
    394 1aij:L (2.2) BS06 FE2 ? GO:0009772 ... P0C0Y8 9115209
    395 1aij:M (2.2) BS04 FE2 ? GO:0009772 ... P0C0Y9 9115209
    396 1aij:R (2.2) BS05 FE2 ? GO:0009772 ... P0C0Y8 9115209
    397 1aij:S (2.2) BS03 FE2 ? GO:0009772 ... P0C0Y9 9115209
    398 1aj4:A (-1.00) BS01 CA ? GO:0003009 ... P09860 9218458
    399 1aj4:A (-1.00) BS02 CA ? GO:0003009 ... P09860 9218458
    400 1aj4:A (-1.00) BS03 CA ? GO:0003009 ... P09860 9218458

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218