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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 1dv3:R (2.5) BS05 FE2 ? GO:0009772 ... P0C0Y8 10677497
    2602 1dv3:S (2.5) BS03 FE2 ? GO:0009772 ... P0C0Y9 10677497
    2603 1dv6:H (2.5) BS01 ZN ? GO:0015979 ... P0C0Y7 10677497
    2604 1dv6:L (2.5) BS04 FE2 ? GO:0009772 ... P0C0Y8 10677497
    2605 1dv6:M (2.5) BS02 FE2 ? GO:0009772 ... P0C0Y9 10677497
    2606 1dv6:R (2.5) BS05 FE2 ? GO:0009772 ... P0C0Y8 10677497
    2607 1dv6:S (2.5) BS03 FE2 ? GO:0009772 ... P0C0Y9 10677497
    2608 1dv6:T (2.5) BS01 ZN ? GO:0015979 ... P0C0Y7 10677497
    2609 1dv8:A (2.3) BS01 CA ? N/A P07306 10891274
    2610 1dv8:A (2.3) BS02 CA ? N/A P07306 10891274
    2611 1dv8:A (2.3) BS03 CA ? N/A P07306 10891274
    2612 1dva:H (3.0) BS03 CA 3.4.21.21 GO:0004252 ... P08709 10761907
    2613 1dva:I (3.0) BS03 CA 3.4.21.21 GO:0004252 ... P08709 10761907
    2614 1dva:L (3.0) BS04 CA 3.4.21.21 GO:0005509 ... P08709 10761907
    2615 1dva:M (3.0) BS02 CA 3.4.21.21 GO:0005509 ... P08709 10761907
    2616 1dvb:A (1.9) BS01 FE ? GO:0005506 ... P24931 10968622
    2617 1dvb:A (1.9) BS02 FE ? GO:0005506 ... P24931 10968622
    2618 1dvb:A (1.9) BS03 ZN ? GO:0005506 ... P24931 10968622
    2619 1dvf:B (1.9) BS01 ZN ? GO:0002250 ... P01820 8950273
    2620 1dvf:D (1.9) BS01 ZN ? GO:0002250 ... A0NA69 8950273
    2621 1dvi:A (2.3) BS01 CA ? GO:0005509 ... Q64537 9228945
    2622 1dvi:A (2.3) BS02 CA ? GO:0005509 ... Q64537 9228945
    2623 1dvi:A (2.3) BS03 CA ? GO:0005509 ... Q64537 9228945
    2624 1dvi:A (2.3) BS04 CA ? GO:0005509 ... Q64537 9228945
    2625 1dvi:B (2.3) BS01 CA ? GO:0005509 ... Q64537 9228945
    2626 1dvi:B (2.3) BS02 CA ? GO:0005509 ... Q64537 9228945
    2627 1dvi:B (2.3) BS03 CA ? GO:0005509 ... Q64537 9228945
    2628 1dvi:B (2.3) BS04 CA ? GO:0005509 ... Q64537 9228945
    2629 1dvp:A (2.0) BS01 ZN ? GO:0035091 ... Q960X8 10693761
    2630 1dvp:A (2.0) BS02 ZN ? GO:0035091 ... Q960X8 10693761
    2631 1dwa:M (2.0) BS01 ZN 3.2.1.147 GO:0004553 ... P29736 10713520
    2632 1dwf:M (2.0) BS01 ZN 3.2.1.147 GO:0004553 ... P29736 10713520
    2633 1dwg:M (2.0) BS01 ZN 3.2.1.147 GO:0004553 ... P29736 10713520
    2634 1dwh:M (2.0) BS01 ZN 3.2.1.147 GO:0004553 ... P29736 10713520
    2635 1dwi:M (2.0) BS01 ZN 3.2.1.147 GO:0004553 ... P29736 10713520
    2636 1dwj:M (2.4) BS01 ZN 3.2.1.147 GO:0004553 ... P29736 10713520
    2637 1dwv:A (2.35) BS03 ZN 1.14.13.39 GO:0004517 ... P29477 10769116
    2638 1dwv:B (2.35) BS03 ZN 1.14.13.39 GO:0004517 ... P29477 10769116
    2639 1dww:A (2.35) BS03 ZN 1.14.13.39 GO:0004517 ... P29477 10769116
    2640 1dww:B (2.35) BS03 ZN 1.14.13.39 GO:0004517 ... P29477 10769116
    2641 1dx5:I (2.3) BS01 CA ? GO:0004888 ... P07204 10761923
    2642 1dx5:J (2.3) BS01 CA ? GO:0004888 ... P07204 10761923
    2643 1dx5:K (2.3) BS01 CA ? GO:0004888 ... P07204 10761923
    2644 1dx5:L (2.3) BS01 CA ? GO:0004888 ... P07204 10761923
    2645 1dx8:A (-1.00) BS01 ZN ? GO:0005506 ... Q9XG40 10975569
    2646 1dxe:A (1.8) BS02 MG 4.1.2.20 GO:0000287 ... P23522 10921867
    2647 1dxe:B (1.8) BS02 MG 4.1.2.20 GO:0000287 ... P23522 10921867
    2648 1dxf:A (2.6) BS02 MG 4.1.2.20 GO:0000287 ... P23522 10921867
    2649 1dxf:B (2.6) BS02 MG 4.1.2.20 GO:0000287 ... P23522 10921867
    2650 1dxg:A (1.8) BS01 FE ? GO:0005506 ... P00273 7666420
    2651 1dxg:B (1.8) BS01 FE ? GO:0005506 ... P00273 7666420
    2652 1dxi:A (2.6) BS01 MG 5.3.1.5 GO:0000287 ... P37031 15299450
    2653 1dxi:A (2.6) BS02 MG 5.3.1.5 GO:0000287 ... P37031 15299450
    2654 1dxi:B (2.6) BS01 MG 5.3.1.5 GO:0000287 ... P37031 15299450
    2655 1dxi:B (2.6) BS02 MG 5.3.1.5 GO:0000287 ... P37031 15299450
    2656 1dxk:A (1.85) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 10933508
    2657 1dxp:A (2.4) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P26662 10702283
    2658 1dxp:B (2.4) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P26662 10702283
    2659 1dxr:L (2.0) BS04 FE2 ? GO:0009772 ... P06009 11005826
    2660 1dxr:M (2.0) BS03 FE2 ? GO:0009772 ... P06010 11005826
    2661 1dxw:A (-1.00) BS02 ZN 3.6.4.13 GO:0006508 ... Q8QW30 10716920
    2662 1dy0:A (2.2) BS01 ZN ? N/A P39061 10704302
    2663 1dy0:A (2.2) BS02 ZN ? N/A P39061 10704302
    2664 1dy1:A (2.2) BS01 ZN ? N/A P39061 10704302
    2665 1dy3:A (2.0) BS03 MG 2.7.6.3 GO:0000287 ... P26281 10452528
    2666 1dy3:A (2.0) BS04 MG 2.7.6.3 GO:0000287 ... P26281 10452528
    2667 1dy4:A (1.9) BS02 CO 3.2.1.91 GO:0004553 ... P62694 11114249
    2668 1dy4:A (1.9) BS03 CO 3.2.1.91 GO:0004553 ... P62694 11114249
    2669 1dy9:B (2.1) BS03 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P26662 10702283
    2670 1dyi:B (1.9) BS01 CA 1.5.1.3 GO:0004146 ... P0ABQ4 7873554
    2671 1dyk:A (2.0) BS01 CA ? N/A Q60675 10747011
    2672 1dyk:A (2.0) BS02 CA ? N/A Q60675 10747011
    2673 1dyo:A (2.1) BS01 CA 3.2.1.8 GO:0016798 ... P51584 10819965
    2674 1dyo:B (2.1) BS01 CA 3.2.1.8 GO:0016798 ... P51584 10819965
    2675 1dyq:A (1.5) BS01 ZN ? GO:0005515 ... P0A0L2 11847286
    2676 1dyu:A (2.04) BS01 CU 1.4.3.21 GO:0005507 ... P46883 10387067
    2677 1dyu:A (2.04) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10387067
    2678 1dyu:A (2.04) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10387067
    2679 1dyu:B (2.04) BS01 CU 1.4.3.21 GO:0005507 ... P46883 10387067
    2680 1dyu:B (2.04) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10387067
    2681 1dyu:B (2.04) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10387067
    2682 1dyz:A (1.75) BS01 CU ? GO:0005507 ... P56275 10818345
    2683 1dz0:A (1.75) BS01 CU1 ? GO:0005507 ... P56275 10818345
    2684 1dzi:A (2.1) BS03 CO ? N/A P17301 10778855
    2685 1dzq:A (2.85) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    2686 1dzq:A (2.85) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    2687 1dzq:B (2.85) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    2688 1dzq:B (2.85) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    2689 1dzq:C (2.85) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    2690 1dzq:C (2.85) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    2691 1dzq:D (2.85) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    2692 1dzq:D (2.85) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    2693 1dzu:P (2.09) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 10821675
    2694 1dzv:P (1.86) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 10821675
    2695 1dzw:P (2.17) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 10821675
    2696 1dzx:P (2.18) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 10821675
    2697 1dzy:P (2.44) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 10821675
    2698 1dzz:P (1.92) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 10821675
    2699 1e08:A (-1.00) BS05 FE2 1.12.7.2 N/A P07598 10748163
    2700 1e08:D (-1.00) BS01 ZN 1.12.7.2 GO:0008901 ... P07603 10748163
    2701 1e0a:A (-1.00) BS02 MG 3.6.5.2 GO:0000139 ... P60953 10802735
    2702 1e0e:A (-1.00) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0008270 ... P04584 11101216
    2703 1e0e:B (-1.00) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0008270 ... P04584 11101216
    2704 1e14:L (2.7) BS07 FE ? GO:0009772 ... P0C0Y8 10821666
    2705 1e14:M (2.7) BS06 FE ? GO:0009772 ... P0C0Y9 10821666
    2706 1e1a:A (1.8) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 11435114
    2707 1e1a:A (1.8) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 11435114
    2708 1e1h:A (1.8) BS01 ZN 3.4.24.69 GO:0004222 ... Q45894 15107500
    2709 1e1h:C (1.8) BS01 ZN 3.4.24.69 GO:0004222 ... Q45894 15107500
    2710 1e1t:A (2.4) BS03 MG 6.1.1.6 GO:0000049 ... P0A8N5 10913247
    2711 1e1z:P (2.4) BS01 MG 3.1.6.8 GO:0004065 ... P15289 11124905
    2712 1e22:A (2.43) BS03 MG 6.1.1.6 GO:0000049 ... P0A8N5 10913247
    2713 1e24:A (2.35) BS03 MN 6.1.1.6 GO:0000049 ... P0A8N5 10913247
    2714 1e29:A (1.21) BS02 CA ? GO:0005506 ... Q55013 11315568
    2715 1e2s:P (2.35) BS01 MG 3.1.6.8 GO:0004065 ... P15289 11124905
    2716 1e30:A (1.5) BS01 CU ? GO:0005507 ... P0C918 10504237
    2717 1e30:B (1.5) BS01 CU ? GO:0005507 ... P0C918 10504237
    2718 1e31:A (2.71) BS01 ZN ? GO:0000228 ... O15392 10949039
    2719 1e31:B (2.71) BS01 ZN ? GO:0000228 ... O15392 10949039
    2720 1e33:P (2.5) BS01 MG 3.1.6.8 GO:0004065 ... P15289 11777924
    2721 1e34:B (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11023818
    2722 1e35:B (1.9) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11023818
    2723 1e36:B (1.7) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11023818
    2724 1e37:B (1.75) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11023818
    2725 1e38:B (1.7) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11023818
    2726 1e3a:B (1.8) BS01 CA 3.5.1.11 GO:0016787 ... P06875 10993730
    2727 1e3c:P (2.65) BS01 MG 3.1.6.8 GO:0004065 ... P15289 11124905
    2728 1e3d:B (1.8) BS03 MG ? GO:0008901 ... Q9L868 11191224
    2729 1e3d:D (1.8) BS03 MG ? GO:0008901 ... Q9L868 11191224
    2730 1e3e:A (2.12) BS02 ZN 1.1.1.105 GO:0001523 ... Q9QYY9 10970744
    2731 1e3e:A (2.12) BS03 ZN 1.1.1.105 GO:0001523 ... Q9QYY9 10970744
    2732 1e3e:B (2.12) BS02 ZN 1.1.1.105 GO:0001523 ... Q9QYY9 10970744
    2733 1e3e:B (2.12) BS03 ZN 1.1.1.105 GO:0001523 ... Q9QYY9 10970744
    2734 1e3i:A (2.08) BS03 ZN 1.1.1.105 GO:0001523 ... Q9QYY9 10970744
    2735 1e3i:A (2.08) BS04 ZN 1.1.1.105 GO:0001523 ... Q9QYY9 10970744
    2736 1e3i:B (2.08) BS03 ZN 1.1.1.105 GO:0001523 ... Q9QYY9 10970744
    2737 1e3i:B (2.08) BS04 ZN 1.1.1.105 GO:0001523 ... Q9QYY9 10970744
    2738 1e3j:A (2.3) BS01 ZN ? GO:0003939 ... O96496 11237597
    2739 1e3j:A (2.3) BS02 ZN ? GO:0003939 ... O96496 11237597
    2740 1e3l:A (2.5) BS02 ZN 1.1.1.105 GO:0001523 ... Q9QYY9 10970744
    2741 1e3l:A (2.5) BS03 ZN 1.1.1.105 GO:0001523 ... Q9QYY9 10970744
    2742 1e3l:B (2.5) BS02 ZN 1.1.1.105 GO:0001523 ... Q9QYY9 10970744
    2743 1e3l:B (2.5) BS03 ZN 1.1.1.105 GO:0001523 ... Q9QYY9 10970744
    2744 1e3m:A (2.2) BS04 MG ? GO:0000018 ... P23909 11048711
    2745 1e3x:A (1.9) BS01 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2746 1e3x:A (1.9) BS02 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2747 1e3x:A (1.9) BS03 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2748 1e3x:A (1.9) BS04 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2749 1e3x:A (1.9) BS05 NA 3.2.1.1 GO:0004553 ... P00692 10924103
    2750 1e3z:A (1.93) BS06 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2751 1e3z:A (1.93) BS07 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2752 1e3z:A (1.93) BS08 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2753 1e3z:A (1.93) BS09 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2754 1e3z:A (1.93) BS10 NA 3.2.1.1 GO:0004553 ... P00692 10924103
    2755 1e40:A (2.2) BS04 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2756 1e40:A (2.2) BS05 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2757 1e40:A (2.2) BS06 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2758 1e40:A (2.2) BS07 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2759 1e40:A (2.2) BS08 NA 3.2.1.1 GO:0004553 ... P00692 10924103
    2760 1e43:A (1.7) BS01 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2761 1e43:A (1.7) BS02 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2762 1e43:A (1.7) BS03 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2763 1e43:A (1.7) BS04 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    2764 1e43:A (1.7) BS05 NA 3.2.1.1 GO:0004553 ... P00692 10924103
    2765 1e46:P (2.55) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 11054289
    2766 1e47:P (2.15) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 11054289
    2767 1e48:P (1.97) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 11054289
    2768 1e49:P (2.53) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 11054289
    2769 1e4a:P (2.15) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 11054289
    2770 1e4b:P (1.84) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 11054289
    2771 1e4c:P (1.66) BS01 ZN 4.1.2.17 GO:0005829 ... P0AB87 11054289
    2772 1e4e:A (2.5) BS03 MG 6.1.2.1 GO:0003824 ... P25051 10908650
    2773 1e4e:B (2.5) BS03 MG 6.1.2.1 GO:0003824 ... P25051 10908650
    2774 1e4m:M (1.2) BS01 ZN 3.2.1.147 GO:0004553 ... P29736 10978344
    2775 1e4u:A (-1.00) BS01 ZN 2.3.2.27 GO:0004842 ... O95628 11087754
    2776 1e4u:A (-1.00) BS02 ZN 2.3.2.27 GO:0004842 ... O95628 11087754
    2777 1e51:A (2.83) BS02 ZN 4.2.1.24 GO:0001666 ... P13716 N/A
    2778 1e54:A (2.1) BS02 CA ? GO:0006811 ... P24305 10986465
    2779 1e5h:A (1.96) BS01 FE2 1.14.20.1 GO:0005506 ... P18548 11352583
    2780 1e5i:A (2.1) BS01 FE2 1.14.20.1 GO:0005506 ... P18548 11352583
    2781 1e5j:A (1.85) BS04 CA 3.2.1.4 GO:0000272 ... O85465 11828460
    2782 1e5j:A (1.85) BS05 CA 3.2.1.4 GO:0000272 ... O85465 11828460
    2783 1e5n:A (3.2) BS05 CA 3.2.1.8 GO:0004553 ... P14768 11025547
    2784 1e5n:B (3.2) BS05 CA 3.2.1.8 GO:0004553 ... P14768 11025547
    2785 1e5s:A (2.4) BS01 FE2 1.14.11.28 GO:0016706 ... O09345 11737217
    2786 1e5s:B (2.4) BS01 FE2 1.14.11.28 GO:0016706 ... O09345 11737217
    2787 1e5y:A (2.0) BS01 CU ? GO:0005507 ... P00282 N/A
    2788 1e5y:B (2.0) BS01 CU ? GO:0005507 ... P00282 N/A
    2789 1e5y:C (2.0) BS01 CU ? GO:0005507 ... P00282 N/A
    2790 1e5y:D (2.0) BS01 CU ? GO:0005507 ... P00282 N/A
    2791 1e5z:A (2.0) BS01 CU ? GO:0005507 ... P00282 N/A
    2792 1e5z:B (2.0) BS01 CU ? GO:0005507 ... P00282 N/A
    2793 1e5z:C (2.0) BS01 CU ? GO:0005507 ... P00282 N/A
    2794 1e5z:D (2.0) BS01 CU ? GO:0005507 ... P00282 N/A
    2795 1e67:A (2.14) BS01 ZN ? GO:0005507 ... P00282 1576995
    2796 1e67:B (2.14) BS01 ZN ? GO:0005507 ... P00282 1576995
    2797 1e67:C (2.14) BS01 ZN ? GO:0005507 ... P00282 1576995
    2798 1e67:D (2.14) BS01 ZN ? GO:0005507 ... P00282 1576995
    2799 1e6a:A (1.9) BS01 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    2800 1e6a:A (1.9) BS02 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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