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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 1cgx:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    1802 1cgx:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    1803 1cgy:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    1804 1cgy:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    1805 1ch8:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    1806 1chc:A (-1.00) BS01 ZN 2.3.2.27 GO:0046872 ... P28990 8126734
    1807 1chc:A (-1.00) BS02 ZN 2.3.2.27 GO:0046872 ... P28990 8126734
    1808 1chn:A (1.76) BS01 MG ? GO:0000156 ... P0AE67 8176739
    1809 1ci3:M (1.9) BS01 ZN ? GO:0005506 ... P95522 10423236
    1810 1cia:A (2.5) BS01 CO 2.3.1.28 GO:0008811 ... P00484 7906544
    1811 1cib:A (2.3) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    1812 1cil:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888
    1813 1cim:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888
    1814 1cin:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888
    1815 1cip:A (1.5) BS01 MG ? GO:0000287 ... P10824 10358003
    1816 1cit:A (2.7) BS03 ZN ? GO:0003700 ... P22829 10331876
    1817 1cit:A (2.7) BS04 ZN ? GO:0003700 ... P22829 10331876
    1818 1ciu:A (2.3) BS01 CA 2.4.1.19 GO:0003824 ... P26827 8604143
    1819 1ciu:A (2.3) BS02 CA 2.4.1.19 GO:0003824 ... P26827 8604143
    1820 1ciw:A (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    1821 1ciw:A (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    1822 1ciw:B (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    1823 1ciw:B (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    1824 1ciw:C (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    1825 1ciw:C (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    1826 1ciw:D (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    1827 1ciw:D (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    1828 1ciz:A (1.64) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    1829 1ciz:A (1.64) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    1830 1ciz:A (1.64) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    1831 1ciz:A (1.64) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    1832 1ciz:A (1.64) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    1833 1cjk:A (3.0) BS01 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    1834 1cjk:A (3.0) BS02 MN 4.6.1.1 GO:0009190 ... P30803 10427002
    1835 1cjk:C (3.0) BS01 MG ? GO:0003924 ... P04896 10427002
    1836 1cjp:A (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    1837 1cjp:A (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    1838 1cjp:B (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    1839 1cjp:B (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    1840 1cjp:C (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    1841 1cjp:C (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    1842 1cjp:D (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    1843 1cjp:D (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    1844 1cjt:A (2.8) BS01 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    1845 1cjt:A (2.8) BS02 MN 4.6.1.1 GO:0009190 ... P30803 10427002
    1846 1cjt:C (2.8) BS01 MG ? GO:0003924 ... P04896 10427002
    1847 1cju:A (2.8) BS01 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    1848 1cju:A (2.8) BS02 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    1849 1cju:C (2.8) BS01 MG ? GO:0003924 ... P04896 10427002
    1850 1cjv:A (3.0) BS01 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    1851 1cjv:C (3.0) BS01 MG ? GO:0003924 ... P04896 10427002
    1852 1cjv:C (3.0) BS02 ZN ? GO:0003924 ... P04896 10427002
    1853 1cjx:A (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    1854 1cjx:B (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    1855 1cjx:C (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    1856 1cjx:D (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    1857 1cjx:D (2.4) BS02 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    1858 1cjy:A (2.5) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    1859 1cjy:A (2.5) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    1860 1cjy:B (2.5) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    1861 1cjy:B (2.5) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    1862 1ck1:A (2.6) BS01 ZN ? GO:0005576 ... Q06535 11934896
    1863 1ck6:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 10504224
    1864 1ck6:A (1.9) BS03 CA 1.11.1.7 GO:0000302 ... P28313 10504224
    1865 1ck7:A (2.8) BS01 ZN 3.4.24.24 GO:0001525 ... P08253 10356396
    1866 1ck7:A (2.8) BS02 ZN 3.4.24.24 GO:0001525 ... P08253 10356396
    1867 1ck7:A (2.8) BS03 CA 3.4.24.24 GO:0001525 ... P08253 10356396
    1868 1ck7:A (2.8) BS04 CA 3.4.24.24 GO:0001525 ... P08253 10356396
    1869 1ck7:A (2.8) BS05 CA 3.4.24.24 GO:0001525 ... P08253 10356396
    1870 1ckk:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 10467092
    1871 1ckk:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 10467092
    1872 1ckk:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 10467092
    1873 1ckk:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 10467092
    1874 1ckl:A (3.1) BS01 CA ? N/A P15529 10357804
    1875 1ckl:B (3.1) BS01 CA ? N/A P15529 10357804
    1876 1ckl:D (3.1) BS01 CA ? N/A P15529 10357804
    1877 1ckl:E (3.1) BS01 CA ? N/A P15529 10357804
    1878 1ckl:F (3.1) BS01 CA ? N/A P15529 10357804
    1879 1cl4:A (-1.00) BS01 ZN ? GO:0003676 ... P07567 9827993
    1880 1cla:A (2.34) BS01 CO 2.3.1.28 GO:0008811 ... P00484 2109633
    1881 1clc:A (1.9) BS01 CA 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    1882 1clc:A (1.9) BS02 CA 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    1883 1clc:A (1.9) BS03 CA 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    1884 1clc:A (1.9) BS04 ZN 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    1885 1cld:A (-1.00) BS01 CD ? GO:0000981 ... P08657 7552715
    1886 1cld:A (-1.00) BS02 CD ? GO:0000981 ... P08657 7552715
    1887 1clk:A (1.9) BS01 MG 5.3.1.5 GO:0000287 ... P50910 10666592
    1888 1clk:A (1.9) BS02 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    1889 1cll:A (1.7) BS01 CA ? GO:0000086 ... P0DP23 1474585
    1890 1cll:A (1.7) BS02 CA ? GO:0000086 ... P0DP23 1474585
    1891 1cll:A (1.7) BS03 CA ? GO:0000086 ... P0DP23 1474585
    1892 1cll:A (1.7) BS04 CA ? GO:0000086 ... P0DP23 1474585
    1893 1clm:A (1.8) BS01 CA ? GO:0005509 ... P07463 8453381
    1894 1clm:A (1.8) BS02 CA ? GO:0005509 ... P07463 8453381
    1895 1clm:A (1.8) BS03 CA ? GO:0005509 ... P07463 8453381
    1896 1clm:A (1.8) BS04 CA ? GO:0005509 ... P07463 8453381
    1897 1clq:A (2.7) BS03 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    1898 1clq:A (2.7) BS04 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    1899 1clq:A (2.7) BS05 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    1900 1clq:A (2.7) BS06 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    1901 1clv:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P56634 10508777
    1902 1clx:A (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    1903 1clx:B (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    1904 1clx:C (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    1905 1clx:D (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    1906 1cm1:A (2.0) BS02 CA ? GO:0000922 ... P62157 9438860
    1907 1cm1:A (2.0) BS03 CA ? GO:0000922 ... P62157 9438860
    1908 1cm1:A (2.0) BS04 CA ? GO:0000922 ... P62157 9438860
    1909 1cm1:A (2.0) BS05 CA ? GO:0000922 ... P62157 9438860
    1910 1cm1:A (2.0) BS06 CA ? GO:0000922 ... P62157 9438860
    1911 1cm4:A (2.0) BS02 CA ? GO:0000922 ... P62157 9438860
    1912 1cm4:A (2.0) BS03 CA ? GO:0000922 ... P62157 9438860
    1913 1cm4:A (2.0) BS04 CA ? GO:0000922 ... P62157 9438860
    1914 1cm4:A (2.0) BS05 CA ? GO:0000922 ... P62157 9438860
    1915 1cm4:A (2.0) BS06 CA ? GO:0000922 ... P62157 9438860
    1916 1cm4:A (2.0) BS07 CA ? GO:0000922 ... P62157 9438860
    1917 1cm4:A (2.0) BS08 CA ? GO:0000922 ... P62157 9438860
    1918 1cm4:A (2.0) BS09 CA ? GO:0000922 ... P62157 9438860
    1919 1cm4:A (2.0) BS10 CA ? GO:0000922 ... P62157 9438860
    1920 1cm4:A (2.0) BS11 CA ? GO:0000922 ... P62157 9438860
    1921 1cm4:A (2.0) BS12 CA ? GO:0000922 ... P62157 9438860
    1922 1cm4:A (2.0) BS13 CA ? GO:0000922 ... P62157 9438860
    1923 1cm4:A (2.0) BS14 CA ? GO:0000922 ... P62157 9438860
    1924 1cm4:A (2.0) BS15 CA ? GO:0000922 ... P62157 9438860
    1925 1cm4:A (2.0) BS16 CA ? GO:0000922 ... P62157 9438860
    1926 1cm4:A (2.0) BS17 CA ? GO:0000922 ... P62157 9438860
    1927 1cm4:A (2.0) BS18 CA ? GO:0000922 ... P62157 9438860
    1928 1cmc:A (1.8) BS01 MG ? GO:0003677 ... P0A8U6 2677753
    1929 1cmc:B (1.8) BS02 MG ? GO:0003677 ... P0A8U6 2677753
    1930 1cnc:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7803386
    1931 1cng:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    1932 1cnh:A (2.05) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    1933 1cni:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    1934 1cnj:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    1935 1cnk:A (2.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    1936 1cnm:A (2.2) BS01 CA 3.4.21.64 GO:0004252 ... P06873 10737944
    1937 1cnm:A (2.2) BS02 CA 3.4.21.64 GO:0004252 ... P06873 10737944
    1938 1cnq:A (2.27) BS03 ZN 3.1.3.11 GO:0005737 ... P00636 9708979
    1939 1cnq:A (2.27) BS04 ZN 3.1.3.11 GO:0005737 ... P00636 9708979
    1940 1cnq:A (2.27) BS05 ZN 3.1.3.11 GO:0005737 ... P00636 9708979
    1941 1cnw:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7608893
    1942 1cnx:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7608893
    1943 1cny:A (2.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7608893
    1944 1cnz:A (1.76) BS01 MN 1.1.1.85 GO:0000287 ... P37412 9086278
    1945 1cnz:B (1.76) BS01 MN 1.1.1.85 GO:0000287 ... P37412 9086278
    1946 1co4:A (-1.00) BS01 ZN ? GO:0003677 ... P41772 9665167
    1947 1co7:E (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00763 N/A
    1948 1cob:A (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 1619651
    1949 1cob:A (2.0) BS02 CO 1.15.1.1 GO:0000209 ... P00442 1619651
    1950 1cob:B (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 1619651
    1951 1cob:B (2.0) BS02 CO 1.15.1.1 GO:0000209 ... P00442 1619651
    1952 1coj:A (1.9) BS01 FE 1.15.1.1 GO:0004784 ... Q9X6W9 9236127
    1953 1con:A (2.0) BS01 CD ? GO:0030246 ... P02866 15299493
    1954 1con:A (2.0) BS02 CA ? GO:0030246 ... P02866 15299493
    1955 1con:A (2.0) BS03 CD ? GO:0030246 ... P02866 15299493
    1956 1cow:B (3.1) BS01 MG 3.6.1.34 GO:0005515 ... P19483 8692918
    1957 1cp6:A (1.9) BS01 ZN 3.4.11.10 GO:0006508 ... Q01693 10413478
    1958 1cp6:A (1.9) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 10413478
    1959 1cp7:A (1.58) BS01 ZN 3.4.11.24 GO:0004177 ... P80561 10771423
    1960 1cp7:A (1.58) BS02 ZN 3.4.11.24 GO:0004177 ... P80561 10771423
    1961 1cp7:A (1.58) BS03 CA 3.4.11.24 GO:0004177 ... P80561 10771423
    1962 1cp9:B (2.5) BS01 CA ? GO:0016787 ... Q7WZI9 10548042
    1963 1cpm:A (2.0) BS01 CA 3.2.1.73 GO:0004553 ... P23904 7937966
    1964 1cpn:A (1.8) BS01 CA 3.2.1.73 GO:0004553 ... P23904 7937966
    1965 1cpo:A (1.9) BS08 MN 1.11.1.10 GO:0004601 ... P04963 8747463
    1966 1cpr:A (2.1) BS01 ZN ? GO:0005506 ... P00147 15299853
    1967 1cps:A (2.25) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 1527041
    1968 1cpu:A (2.0) BS05 CA 3.2.1.1 GO:0003824 ... P04746 10769135
    1969 1cpx:A (2.0) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 9843422
    1970 1cq1:A (1.9) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    1971 1cq1:A (1.9) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    1972 1cq1:A (1.9) BS04 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    1973 1cq1:B (1.9) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    1974 1cq1:B (1.9) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    1975 1cq1:B (1.9) BS04 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    1976 1cq9:A (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    1977 1cq9:A (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    1978 1cq9:B (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    1979 1cq9:B (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    1980 1cq9:C (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    1981 1cq9:C (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    1982 1cq9:D (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    1983 1cq9:D (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    1984 1cqi:B (3.3) BS01 MG 6.2.1.5 GO:0000287 ... P0A836 10625475
    1985 1cqi:E (3.3) BS01 MG 6.2.1.5 GO:0000287 ... P0A836 10625475
    1986 1cqp:A (2.6) BS01 MG ? N/A P20701 10493852
    1987 1cqp:B (2.6) BS02 MG ? N/A P20701 10493852
    1988 1cqr:A (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    1989 1cqr:A (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    1990 1cqr:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1991 1cqr:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1992 1cqr:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1993 1cqr:B (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    1994 1cqr:B (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    1995 1cqr:B (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1996 1cqr:B (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1997 1cqr:B (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1998 1cqv:A (2.06) BS01 ZN ? GO:0005576 ... P34071 11526318
    1999 1cr7:A (2.6) BS03 CA ? GO:0030246 ... P02872 11288176
    2000 1cr7:A (2.6) BS04 MN ? GO:0030246 ... P02872 11288176

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218