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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1frb:A (1.7) BS02 ZST 1.1.1.21 GO:0004032 ... P45377 7578036 MOAD: Kd=30nM
    2 2dux:A (1.6) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 16952371 BindingDB: IC50=3.1nM, Ki=19nM
    3 2duz:A (1.6) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 16952371 BindingDB: IC50=3.1nM, Ki=19nM
    4 2dv0:A (1.62) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 16952371 BindingDB: IC50=3.1nM, Ki=19nM
    5 2fz8:A (1.48) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 16952371 BindingDB: IC50=3.1nM, Ki=19nM
    6 2fz9:A (1.6) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 16952371 BindingDB: IC50=3.1nM, Ki=19nM
    7 2hv5:A (1.59) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 16952371 BindingDB: IC50=3.1nM, Ki=19nM
    8 2hvn:A (1.58) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 16952371 BindingDB: IC50=3.1nM, Ki=19nM
    9 2hvo:A (1.65) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 16952371 BindingDB: IC50=3.1nM, Ki=19nM
    10 2pd5:A (1.6) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 18495158 MOAD: Kd=37nM
    BindingDB: IC50=3.1nM, Ki=19nM
    11 2pdb:A (1.6) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 18495158 MOAD: Kd=97nM
    BindingDB: IC50=3.1nM, Ki=19nM
    12 2pdf:A (1.56) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 18495158 MOAD: Kd=217nM
    BindingDB: IC50=3.1nM, Ki=19nM
    13 2pdi:A (1.55) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 18495158 MOAD: Kd=53.2nM
    BindingDB: IC50=3.1nM, Ki=19nM
    14 2pdm:A (1.75) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 18495158 MOAD: Kd=0.4uM
    BindingDB: IC50=3.1nM, Ki=19nM
    15 2pdx:A (1.65) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 18495158 MOAD: Kd=2.38uM
    BindingDB: IC50=3.1nM, Ki=19nM
    16 3len:A (1.21) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21684320 MOAD: Kd=2.56uM
    BindingDB: IC50=3.1nM, Ki=19nM
    17 3m0i:A (1.07) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21684320 MOAD: Kd=1.85uM
    BindingDB: IC50=3.1nM, Ki=19nM
    18 3mb9:A (1.65) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21684320 MOAD: Kd=0.106uM
    BindingDB: IC50=3.1nM, Ki=19nM
    19 4jii:X (2.2) BS02 ZST 1.1.1.300
    1.1.1.54    		 GO:0001523 ... O60218 24100137 MOAD: ic50=0.62uM
    BindingDB: IC50=620nM
    20 4kyh:A (2.5) BS03 ZST 4.4.1.5 GO:0004462 ... Q9CPU0 23857942 PDBbind: -logKd/Ki=5.92, Ki=1.2uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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