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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3eml:A (2.6) BS01 ZMA ?
    3.2.1.17    		 GO:0003796 ... P00720
    P29274    		 18832607 PDBbind: -logKd/Ki=8.74, Kd=1.8nM
    2 3pwh:A (3.296) BS01 ZMA ? GO:0001609 ... P29274 21885291 PDBbind: -logKd/Ki=8.72, Kd=1.9nM
    BindingDB: Ki=1.9nM, Kd=0.22nM, IC50=42nM
    3 3vg9:A (2.7) BS01 ZMA ? GO:0001609 ... P29274 22286059 BindingDB: Ki=1.9nM, Kd=0.22nM, IC50=42nM
    4 3vga:A (3.1) BS01 ZMA ? GO:0001609 ... P29274 22286059 BindingDB: Ki=1.9nM, Kd=0.22nM, IC50=42nM
    5 4eiy:A (1.8) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 22798613
    6 5iu4:A (1.72) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 27312113 MOAD: Ki=0.53nM
    PDBbind: -logKd/Ki=9.28, Ki=0.53nM
    7 5jtb:A (2.8) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 28508075
    8 5k2a:A (2.5) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    9 5k2b:A (2.5) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    10 5k2c:A (1.9) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    11 5k2d:A (1.9) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    12 5nlx:A (2.14) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 28912485
    13 5nm2:A (1.948) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 28912485
    14 5nm4:A (1.7) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 28912485
    15 5olg:A (1.87) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 29311713 MOAD: Kd=2.5nM
    16 5uvi:A (3.2) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 28875031
    17 5vra:A (2.35) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 29300389
    18 6aqf:A (2.51) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 29290469 PDBbind: -logKd/Ki=8.67, Kd=2.14nM
    19 6jzh:A (2.25) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 31798359
    20 6lpj:A (1.8) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 33168855
    21 6lpk:A (1.8) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 33168855
    22 6lpl:A (2.0) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 33168855
    23 6mh8:A (4.2) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 31098022
    24 6ps7:A (1.85) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 31709066
    25 6s0l:A (2.65) BS01 ZMA ? GO:0001609 ... P29274 33209311 BindingDB: Ki=1.9nM, Kd=0.22nM, IC50=42nM
    26 6s0q:A (2.65) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 33209311
    27 6wqa:A (2.0) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 N/A
    28 7rm5:A (2.79) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 34462357
    29 7t32:A (3.4) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 35902590
    30 8fyn:A (2.0) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 36841804
    31 8rqq:A (2.37) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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