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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1w1q:A (1.8) BS02 ZIP 1.5.99.12 GO:0003824 ... Q9T0N8 15321719
    2 2exm:A (1.8) BS01 ZIP 2.7.11.22 GO:0000082 ... P24941 7479711 PDBbind: -logKd/Ki=4.11, Ki=78uM
    3 3s1e:A (1.9) BS02 ZIP 1.5.99.12 GO:0003824 ... Q9T0N8 26519657
    4 3s1f:A (2.0) BS02 ZIP 1.5.99.12 GO:0003824 ... Q9T0N8 26519657
    5 3t4j:A (1.65) BS01 ZIP 2.7.13.3
    3.1.3.16    		 N/A Q9C5U0 21964459
    6 3t4j:B (1.65) BS01 ZIP 2.7.13.3
    3.1.3.16    		 N/A Q9C5U0 21964459
    7 4gy9:A (2.04) BS01 ZIP ? GO:0004864 ... P93330 24311578
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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