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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2p1s:A (1.93) BS02 Z9N 3.4.21.- GO:0005576 ... P24627 N/A
    2 2xy5:A (2.22) BS03 Z9N 2.7.7.7 GO:0000166 ... E1C9K5 21941252
    3 3fp0:A (1.9) BS02 Z9N 2.3.2.- GO:0016407 ... Q9C1B7 19319932
    4 3kle:J (3.2) BS03 Z9N 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003964 ... P03366 20852643
    5 3uer:A (2.1) BS01 Z9N 2.4.1.4 GO:0005975 ... Q1J0W0 22210773
    6 5coy:A (1.443) BS02 Z9N ? GO:0002407 ... P13501 27091995
    7 6gkd:A (2.99) BS02 Z9N 5.6.1.6 GO:0005524 ... P13569 31201318
    8 6gkd:F (2.99) BS02 Z9N 5.6.1.6 GO:0005524 ... P13569 31201318
    9 6gkd:I (2.99) BS01 Z9N 5.6.1.6 GO:0005524 ... P13569 31201318
    10 6gkd:I (2.99) BS03 Z9N 5.6.1.6 GO:0005524 ... P13569 31201318
    11 6gkd:L (2.99) BS01 Z9N 5.6.1.6 GO:0005524 ... P13569 31201318
    12 6jad:A (1.9) BS01 Z9N ? N/A Q5SLD7 31608555
    13 6jao:A (1.77) BS01 Z9N ? N/A Q5SLD7 31608555
    14 6jba:A (2.0) BS01 Z9N ? N/A Q5SLD7 31608555
    15 7fga:D (3.2) BS01 Z9N ? GO:0000166 ... Q8DIJ4 N/A
    16 8hui:A (1.44) BS01 Z9N N/A N/A N/A N/A
    17 8hui:B (1.44) BS01 Z9N N/A N/A N/A N/A
    18 8hui:C (1.44) BS02 Z9N N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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