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BioLiP
Download all results in tab-seperated text for 43 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1afc:A (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    2 1afc:B (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    3 1afc:C (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    4 1afc:D (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    5 1afc:E (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    6 1afc:F (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    7 1afc:G (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    8 1afc:H (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    9 2p39:A (1.5) BS02 YYJ ? GO:0008083 ... Q9GZV9 17339340
    10 2uus:A (2.2) BS02 YYJ ? GO:0008083 ... P61149 18540049
    11 2uwn:A (2.35) BS01 YYJ ? N/A P08603 17893204
    12 2v5e:A (2.35) BS02 YYJ ? GO:0038023 ... Q62997 18845535
    13 2v8e:A (2.5) BS02 YYJ ? N/A P08603 17893204
    14 2yd8:A (2.05) BS01 YYJ 3.1.3.48 N/A P10586 21454754
    15 3cu1:A (2.6) BS02 YYJ 2.7.10.1 N/A P21802 N/A
    16 3cu1:C (2.6) BS02 YYJ 2.7.10.1 N/A P21802 N/A
    17 3cu1:D (2.6) BS02 YYJ ? GO:0008083 ... P05230 N/A
    18 3j4p:A (4.8) BS01 YYJ ? GO:0005198 ... P03135 24036405
    19 3ldj:B (1.7) BS01 YYJ ? GO:0004867 ... P00974 20529698
    20 3ldj:C (1.7) BS01 YYJ ? GO:0004867 ... P00974 20529698
    21 3pma:B (2.2) BS02 YYJ 3.4.21.5 GO:0004252 ... P00735 21736375
    22 3pma:D (2.2) BS03 YYJ 3.4.21.5 GO:0004252 ... P00735 21736375
    23 3q7g:A (2.3) BS02 YYJ ? GO:0016020 ... P51693 21715329
    24 3q7g:A (2.3) BS04 YYJ ? GO:0016020 ... P51693 21715329
    25 3q7g:B (2.3) BS01 YYJ ? GO:0016020 ... P51693 21715329
    26 3q7g:B (2.3) BS03 YYJ ? GO:0016020 ... P51693 21715329
    27 3qrc:A (1.852) BS02 YYJ ? GO:0044384 ... Q8D0Z7 22078566
    28 3qrc:B (1.852) BS02 YYJ ? GO:0044384 ... Q8D0Z7 22078566
    29 4bqc:A (3.2) BS02 YYJ ? N/A P97798 23744777
    30 4uz6:A (1.9) BS02 YYJ 3.1.1.98 GO:0016787 ... Q6P988 25731175
    31 4uz6:A (1.9) BS03 YYJ 3.1.1.98 GO:0016787 ... Q6P988 25731175
    32 4uz6:B (1.9) BS02 YYJ 3.1.1.98 GO:0016787 ... Q6P988 25731175
    33 4uz9:A (2.2) BS02 YYJ 3.1.1.98 GO:0016787 ... Q6P988 25731175
    34 5bqc:A (3.0) BS01 YYJ ? GO:0000278 ... Q00604 26158506
    35 7ne0:A (3.25) BS01 YYJ ? N/A O95631 33740419
    36 7ne1:A (3.15) BS02 YYJ ? N/A O95631 33740419
    37 7pgk:A (2.75) BS02 YYJ ? N/A Q96QV1 34887403
    38 7pgn:A (2.4) BS02 YYJ ? N/A Q96QV1 34887403
    39 8ckl:A (2.56) BS01 YYJ ? N/A Q13591 38548715
    40 8hue:B (1.48) BS02 YYJ N/A N/A P09038 N/A
    41 8hue:C (1.48) BS01 YYJ N/A N/A P09038 N/A
    42 8rmj:A (2.79) BS03 YYJ N/A N/A A1ZAF5 39042673
    43 8rmj:A (2.79) BS04 YYJ N/A N/A A1ZAF5 39042673
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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