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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7mbp:A (2.8) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    2 7mbp:A (2.8) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    3 7mbp:B (2.8) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    4 7mbp:B (2.8) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    5 7mbp:C (2.8) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    6 7mbp:C (2.8) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    7 7mbp:D (2.8) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    8 7mbp:D (2.8) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    9 7mbq:A (2.3) BS03 YUY ? GO:0005216 ... S5UH55 34168372
    10 7mbq:A (2.3) BS04 YUY ? GO:0005216 ... S5UH55 34168372
    11 7mbq:B (2.3) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    12 7mbq:B (2.3) BS04 YUY ? GO:0005216 ... S5UH55 34168372
    13 7mbq:C (2.3) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    14 7mbq:C (2.3) BS04 YUY ? GO:0005216 ... S5UH55 34168372
    15 7mbq:D (2.3) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    16 7mbq:D (2.3) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    17 7mbr:A (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    18 7mbr:A (-1.00) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    19 7mbr:B (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    20 7mbr:B (-1.00) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    21 7mbr:C (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    22 7mbr:C (-1.00) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    23 7mbr:D (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    24 7mbr:D (-1.00) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    25 7mbs:A (-1.00) BS03 YUY ? GO:0005216 ... S5UH55 34168372
    26 7mbs:A (-1.00) BS04 YUY ? GO:0005216 ... S5UH55 34168372
    27 7mbs:B (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    28 7mbs:B (-1.00) BS04 YUY ? GO:0005216 ... S5UH55 34168372
    29 7mbs:C (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    30 7mbs:C (-1.00) BS04 YUY ? GO:0005216 ... S5UH55 34168372
    31 7mbs:D (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    32 7mbs:D (-1.00) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    33 7mbt:A (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    34 7mbt:A (-1.00) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    35 7mbt:B (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    36 7mbt:B (-1.00) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    37 7mbt:C (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    38 7mbt:C (-1.00) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    39 7mbt:D (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    40 7mbt:D (-1.00) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    41 7mbu:A (-1.00) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    42 7mbu:A (-1.00) BS03 YUY ? GO:0005216 ... S5UH55 34168372
    43 7mbu:B (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    44 7mbu:B (-1.00) BS03 YUY ? GO:0005216 ... S5UH55 34168372
    45 7mbu:C (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    46 7mbu:C (-1.00) BS03 YUY ? GO:0005216 ... S5UH55 34168372
    47 7mbu:D (-1.00) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    48 7mbu:D (-1.00) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    49 7mbv:A (2.8) BS04 YUY ? GO:0005216 ... S5UH55 34168372
    50 7mbv:A (2.8) BS05 YUY ? GO:0005216 ... S5UH55 34168372
    51 7mbv:B (2.8) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    52 7mbv:B (2.8) BS05 YUY ? GO:0005216 ... S5UH55 34168372
    53 7mbv:C (2.8) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    54 7mbv:C (2.8) BS05 YUY ? GO:0005216 ... S5UH55 34168372
    55 7mbv:D (2.8) BS01 YUY ? GO:0005216 ... S5UH55 34168372
    56 7mbv:D (2.8) BS02 YUY ? GO:0005216 ... S5UH55 34168372
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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