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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a78:A (2.0) BS01 YIO ? GO:0005576 ... P56217 10861929
    2 1a78:B (2.0) BS01 YIO ? GO:0005576 ... P56217 10861929
    3 1lt5:D (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    4 1lt5:E (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    5 1lt5:F (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    6 1lt5:G (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    7 1lt5:H (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    8 1muq:B (2.3) BS01 YIO ? GO:0005576 ... P21963 15049685
    9 2yio:A (2.43) BS01 YIO ? GO:0005576 ... P81860 22101820
    10 2yio:B (2.43) BS01 YIO ? GO:0005576 ... P81860 22101820
    11 2yip:A (2.14) BS01 YIO ? GO:0005576 ... P81860 22101820
    12 2yip:B (2.14) BS01 YIO ? GO:0005576 ... P81860 22101820
    13 2yip:C (2.14) BS01 YIO ? GO:0005576 ... P81860 22101820
    14 2yip:D (2.14) BS01 YIO ? GO:0005576 ... P81860 22101820
    15 2yip:E (2.14) BS01 YIO ? GO:0005576 ... P81860 22101820
    16 2yip:F (2.14) BS01 YIO ? GO:0005576 ... P81860 22101820
    17 3oyw:A (2.5) BS01 YIO ? GO:0002317 ... P09382 20826047
    18 3oyw:B (2.5) BS01 YIO ? GO:0002317 ... P09382 20826047
    19 4jc1:A (1.5) BS01 YIO ? GO:0030246 ... P17931 23864426
    20 4oaa:A (3.5) BS01 YIO N/A GO:0005351 ... N/A 24453216
    21 4oaa:B (3.5) BS01 YIO N/A GO:0005351 ... N/A 24453216
    22 6vbg:A (2.8) BS01 YIO ? GO:0005351 ... P02920 32380514
    23 6vbg:B (2.8) BS01 YIO ? GO:0005351 ... P02920 32380514
    24 8oji:A (1.75) BS01 YIO ? GO:0030246 ... P17931 37658813
    25 8ojk:A (1.8) BS01 YIO ? GO:0030246 ... P17931 37658813
    26 8ojm:A (1.8) BS02 YIO ? GO:0030246 ... P17931 37658813
    27 8ojo:A (1.8) BS03 YIO ? GO:0030246 ... P17931 37658813
    28 8ppn:A (1.8) BS02 YIO ? GO:0030246 ... P17931 37658813
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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