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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1663 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2y00:A (2.5) BS01 Y01 ? GO:0004930 ... P07700 21228877
    2 2y00:A (2.5) BS02 Y01 ? GO:0004930 ... P07700 21228877
    3 2y00:A (2.5) BS07 Y01 ? GO:0004930 ... P07700 21228877
    4 2y00:B (2.5) BS01 Y01 ? GO:0004930 ... P07700 21228877
    5 2y00:B (2.5) BS03 Y01 ? GO:0004930 ... P07700 21228877
    6 2y00:B (2.5) BS04 Y01 ? GO:0004930 ... P07700 21228877
    7 2y01:A (2.6) BS01 Y01 ? GO:0004930 ... P07700 21228877
    8 2y01:A (2.6) BS02 Y01 ? GO:0004930 ... P07700 21228877
    9 2y01:A (2.6) BS07 Y01 ? GO:0004930 ... P07700 21228877
    10 2y01:B (2.6) BS01 Y01 ? GO:0004930 ... P07700 21228877
    11 2y01:B (2.6) BS02 Y01 ? GO:0004930 ... P07700 21228877
    12 2y02:A (2.6) BS01 Y01 ? GO:0004930 ... P07700 21228877
    13 2y02:A (2.6) BS02 Y01 ? GO:0004930 ... P07700 21228877
    14 2y02:A (2.6) BS07 Y01 ? GO:0004930 ... P07700 21228877
    15 2y02:B (2.6) BS01 Y01 ? GO:0004930 ... P07700 21228877
    16 2y02:B (2.6) BS03 Y01 ? GO:0004930 ... P07700 21228877
    17 2y02:B (2.6) BS04 Y01 ? GO:0004930 ... P07700 21228877
    18 2y03:A (2.85) BS01 Y01 ? GO:0004930 ... P07700 21228877
    19 2y03:A (2.85) BS05 Y01 ? GO:0004930 ... P07700 21228877
    20 2y03:B (2.85) BS01 Y01 ? GO:0004930 ... P07700 21228877
    21 2y03:B (2.85) BS02 Y01 ? GO:0004930 ... P07700 21228877
    22 2y04:A (3.05) BS01 Y01 ? GO:0004930 ... P07700 21228877
    23 2y04:A (3.05) BS02 Y01 ? GO:0004930 ... P07700 21228877
    24 2y04:A (3.05) BS06 Y01 ? GO:0004930 ... P07700 21228877
    25 2y04:B (3.05) BS01 Y01 ? GO:0004930 ... P07700 21228877
    26 2y04:B (3.05) BS03 Y01 ? GO:0004930 ... P07700 21228877
    27 2y04:B (3.05) BS04 Y01 ? GO:0004930 ... P07700 21228877
    28 3zpq:A (2.8) BS01 Y01 ? GO:0004930 ... P07700 23517028
    29 3zpq:A (2.8) BS02 Y01 ? GO:0004930 ... P07700 23517028
    30 3zpq:A (2.8) BS08 Y01 ? GO:0004930 ... P07700 23517028
    31 3zpq:B (2.8) BS01 Y01 ? GO:0004930 ... P07700 23517028
    32 3zpq:B (2.8) BS02 Y01 ? GO:0004930 ... P07700 23517028
    33 3zpq:B (2.8) BS03 Y01 ? GO:0004930 ... P07700 23517028
    34 3zpr:A (2.7) BS01 Y01 ? GO:0004930 ... P07700 23517028
    35 3zpr:A (2.7) BS02 Y01 ? GO:0004930 ... P07700 23517028
    36 3zpr:A (2.7) BS05 Y01 ? GO:0004930 ... P07700 23517028
    37 3zpr:B (2.7) BS01 Y01 ? GO:0004930 ... P07700 23517028
    38 3zpr:B (2.7) BS02 Y01 ? GO:0004930 ... P07700 23517028
    39 3zpr:B (2.7) BS03 Y01 ? GO:0004930 ... P07700 23517028
    40 4ayw:A (3.3) BS02 Y01 ? GO:0005524 ... Q9NRK6 23716676
    41 4xnv:A (2.2) BS02 Y01 ? GO:0004930 ... P00268
    P47900    		 25822790
    42 4xnv:A (2.2) BS03 Y01 ? GO:0004930 ... P00268
    P47900    		 25822790
    43 4xnv:A (2.2) BS04 Y01 ? GO:0004930 ... P00268
    P47900    		 25822790
    44 4xp1:A (2.89) BS06 Y01 ? GO:0016020 ... Q7K4Y6 25970245
    45 4xp4:A (2.8) BS01 Y01 ? GO:0016020 ... Q7K4Y6 25970245
    46 4xp6:A (3.1) BS07 Y01 ? GO:0016020 ... Q7K4Y6 25970245
    47 4xp9:C (2.8) BS01 Y01 ? GO:0016020 ... Q7K4Y6 25970245
    48 4xpt:A (3.36) BS03 Y01 ? GO:0016020 ... Q7K4Y6 25970245
    49 5c65:A (2.65) BS04 Y01 ? GO:0005353 ... P11169 N/A
    50 5c65:B (2.65) BS04 Y01 ? GO:0005353 ... P11169 N/A
    51 5cxv:A (2.7) BS03 Y01 3.2.1.17 GO:0003796 ... P00720
    P11229    		 26958838
    52 5och:A (3.4) BS02 Y01 ? GO:0005524 ... Q9NUT2 N/A
    53 5och:B (3.4) BS02 Y01 ? GO:0005524 ... Q9NUT2 N/A
    54 5och:D (3.4) BS02 Y01 ? GO:0005524 ... Q9NUT2 N/A
    55 5och:E (3.4) BS02 Y01 ? GO:0005524 ... Q9NUT2 N/A
    56 5och:F (3.4) BS02 Y01 ? GO:0005524 ... Q9NUT2 N/A
    57 5och:G (3.4) BS02 Y01 ? GO:0005524 ... Q9NUT2 N/A
    58 5och:H (3.4) BS02 Y01 ? GO:0005524 ... Q9NUT2 N/A
    59 5osa:A (2.75) BS01 Y01 ? GO:0004888 ... P62812
    Q7NDN8    		 28967882
    60 5osa:C (2.75) BS01 Y01 ? GO:0004888 ... P62812
    Q7NDN8    		 28967882
    61 5osa:E (2.75) BS01 Y01 ? GO:0004888 ... P62812
    Q7NDN8    		 28967882
    62 5osc:A (3.1) BS01 Y01 ? GO:0004888 ... P62812
    Q7NDN8    		 28967882
    63 5osc:B (3.1) BS02 Y01 ? GO:0004888 ... P62812
    Q7NDN8    		 28967882
    64 5osc:C (3.1) BS01 Y01 ? GO:0004888 ... P62812
    Q7NDN8    		 28967882
    65 5osc:D (3.1) BS01 Y01 ? GO:0004888 ... P62812
    Q7NDN8    		 28967882
    66 5osc:E (3.1) BS02 Y01 ? GO:0004888 ... P62812
    Q7NDN8    		 28967882
    67 5tr1:A (3.95) BS01 Y01 ? GO:0005247 ... E1B792 28002411
    68 5tr1:A (3.95) BS02 Y01 ? GO:0005247 ... E1B792 28002411
    69 5tr1:B (3.95) BS01 Y01 ? GO:0005247 ... E1B792 28002411
    70 5tr1:B (3.95) BS02 Y01 ? GO:0005247 ... E1B792 28002411
    71 5w3s:A (2.94) BS01 Y01 ? GO:0000421 ... F6RG56 29019979
    72 5w3s:A (2.94) BS02 Y01 ? GO:0000421 ... F6RG56 29019979
    73 5w3s:A (2.94) BS03 Y01 ? GO:0000421 ... F6RG56 29019979
    74 5w3s:B (2.94) BS01 Y01 ? GO:0000421 ... F6RG56 29019979
    75 5w3s:B (2.94) BS02 Y01 ? GO:0000421 ... F6RG56 29019979
    76 5w3s:B (2.94) BS03 Y01 ? GO:0000421 ... F6RG56 29019979
    77 5w3s:C (2.94) BS01 Y01 ? GO:0000421 ... F6RG56 29019979
    78 5w3s:C (2.94) BS02 Y01 ? GO:0000421 ... F6RG56 29019979
    79 5w3s:C (2.94) BS03 Y01 ? GO:0000421 ... F6RG56 29019979
    80 5w3s:D (2.94) BS01 Y01 ? GO:0000421 ... F6RG56 29019979
    81 5w3s:D (2.94) BS02 Y01 ? GO:0000421 ... F6RG56 29019979
    82 5w3s:D (2.94) BS03 Y01 ? GO:0000421 ... F6RG56 29019979
    83 5z96:A (3.28) BS01 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    84 5z96:A (3.28) BS02 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    85 5z96:B (3.28) BS01 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    86 5z96:B (3.28) BS02 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    87 5z96:C (3.28) BS01 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    88 5z96:C (3.28) BS02 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    89 5z96:D (3.28) BS01 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    90 5z96:D (3.28) BS02 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    91 5zx5:A (3.28) BS01 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    92 5zx5:A (3.28) BS02 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    93 5zx5:B (3.28) BS01 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    94 5zx5:B (3.28) BS02 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    95 5zx5:B (3.28) BS03 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    96 5zx5:C (3.28) BS01 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    97 5zx5:C (3.28) BS02 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    98 5zx5:C (3.28) BS03 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    99 5zx5:C (3.28) BS04 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    100 5zx5:D (3.28) BS01 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    101 5zx5:D (3.28) BS02 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    102 5zx5:D (3.28) BS03 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    103 5zx5:D (3.28) BS04 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    104 6aei:A (2.89) BS01 Y01 ? GO:0005216 ... Q9QX29 31355338
    105 6aei:A (2.89) BS02 Y01 ? GO:0005216 ... Q9QX29 31355338
    106 6aei:B (2.89) BS01 Y01 ? GO:0005216 ... Q9QX29 31355338
    107 6aei:B (2.89) BS02 Y01 ? GO:0005216 ... Q9QX29 31355338
    108 6aei:C (2.89) BS01 Y01 ? GO:0005216 ... Q9QX29 31355338
    109 6aei:C (2.89) BS02 Y01 ? GO:0005216 ... Q9QX29 31355338
    110 6aei:D (2.89) BS01 Y01 ? GO:0005216 ... Q9QX29 31355338
    111 6aei:D (2.89) BS02 Y01 ? GO:0005216 ... Q9QX29 31355338
    112 6bqr:A (3.2) BS01 Y01 ? GO:0002250 ... Q8TD43 29217581
    113 6bqr:A (3.2) BS02 Y01 ? GO:0002250 ... Q8TD43 29217581
    114 6bqr:A (3.2) BS03 Y01 ? GO:0002250 ... Q8TD43 29217581
    115 6bqr:A (3.2) BS04 Y01 ? GO:0002250 ... Q8TD43 29217581
    116 6bqr:B (3.2) BS01 Y01 ? GO:0002250 ... Q8TD43 29217581
    117 6bqr:B (3.2) BS02 Y01 ? GO:0002250 ... Q8TD43 29217581
    118 6bqr:B (3.2) BS03 Y01 ? GO:0002250 ... Q8TD43 29217581
    119 6bqr:B (3.2) BS04 Y01 ? GO:0002250 ... Q8TD43 29217581
    120 6bqr:C (3.2) BS01 Y01 ? GO:0002250 ... Q8TD43 29217581
    121 6bqr:C (3.2) BS02 Y01 ? GO:0002250 ... Q8TD43 29217581
    122 6bqr:C (3.2) BS03 Y01 ? GO:0002250 ... Q8TD43 29217581
    123 6bqr:C (3.2) BS04 Y01 ? GO:0002250 ... Q8TD43 29217581
    124 6bqr:D (3.2) BS01 Y01 ? GO:0002250 ... Q8TD43 29217581
    125 6bqr:D (3.2) BS02 Y01 ? GO:0002250 ... Q8TD43 29217581
    126 6bqr:D (3.2) BS03 Y01 ? GO:0002250 ... Q8TD43 29217581
    127 6bqr:D (3.2) BS04 Y01 ? GO:0002250 ... Q8TD43 29217581
    128 6bqv:A (3.1) BS02 Y01 ? GO:0002250 ... Q8TD43 29217581
    129 6bqv:A (3.1) BS03 Y01 ? GO:0002250 ... Q8TD43 29217581
    130 6bqv:A (3.1) BS04 Y01 ? GO:0002250 ... Q8TD43 29217581
    131 6bqv:A (3.1) BS05 Y01 ? GO:0002250 ... Q8TD43 29217581
    132 6bqv:B (3.1) BS02 Y01 ? GO:0002250 ... Q8TD43 29217581
    133 6bqv:B (3.1) BS03 Y01 ? GO:0002250 ... Q8TD43 29217581
    134 6bqv:B (3.1) BS04 Y01 ? GO:0002250 ... Q8TD43 29217581
    135 6bqv:B (3.1) BS05 Y01 ? GO:0002250 ... Q8TD43 29217581
    136 6bqv:C (3.1) BS01 Y01 ? GO:0002250 ... Q8TD43 29217581
    137 6bqv:C (3.1) BS03 Y01 ? GO:0002250 ... Q8TD43 29217581
    138 6bqv:C (3.1) BS04 Y01 ? GO:0002250 ... Q8TD43 29217581
    139 6bqv:C (3.1) BS05 Y01 ? GO:0002250 ... Q8TD43 29217581
    140 6bqv:D (3.1) BS01 Y01 ? GO:0002250 ... Q8TD43 29217581
    141 6bqv:D (3.1) BS03 Y01 ? GO:0002250 ... Q8TD43 29217581
    142 6bqv:D (3.1) BS04 Y01 ? GO:0002250 ... Q8TD43 29217581
    143 6bqv:D (3.1) BS05 Y01 ? GO:0002250 ... Q8TD43 29217581
    144 6bwd:A (3.7) BS01 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    145 6bwd:A (3.7) BS02 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    146 6bwd:A (3.7) BS03 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    147 6bwd:A (3.7) BS04 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    148 6bwd:A (3.7) BS05 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    149 6bwd:A (3.7) BS06 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    150 6bwd:B (3.7) BS01 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    151 6bwd:B (3.7) BS02 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    152 6bwd:B (3.7) BS03 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    153 6bwd:B (3.7) BS04 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    154 6bwd:B (3.7) BS05 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    155 6bwd:B (3.7) BS06 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    156 6bwd:C (3.7) BS01 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    157 6bwd:C (3.7) BS02 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    158 6bwd:C (3.7) BS03 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    159 6bwd:C (3.7) BS04 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    160 6bwd:C (3.7) BS05 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    161 6bwd:D (3.7) BS01 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    162 6bwd:D (3.7) BS02 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    163 6bwd:D (3.7) BS03 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    164 6bwd:D (3.7) BS04 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    165 6bwd:D (3.7) BS05 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    166 6bwd:D (3.7) BS06 Y01 2.7.11.1 GO:0005216 ... Q923J1 30108148
    167 6bwi:A (3.7) BS01 Y01 ? GO:0005216 ... Q8TD43 29463718
    168 6bwi:A (3.7) BS02 Y01 ? GO:0005216 ... Q8TD43 29463718
    169 6bwi:A (3.7) BS03 Y01 ? GO:0005216 ... Q8TD43 29463718
    170 6bwi:A (3.7) BS04 Y01 ? GO:0005216 ... Q8TD43 29463718
    171 6bwi:A (3.7) BS05 Y01 ? GO:0005216 ... Q8TD43 29463718
    172 6bwi:A (3.7) BS06 Y01 ? GO:0005216 ... Q8TD43 29463718
    173 6bwi:A (3.7) BS07 Y01 ? GO:0005216 ... Q8TD43 29463718
    174 6bwi:B (3.7) BS01 Y01 ? GO:0005216 ... Q8TD43 29463718
    175 6bwi:B (3.7) BS02 Y01 ? GO:0005216 ... Q8TD43 29463718
    176 6bwi:B (3.7) BS03 Y01 ? GO:0005216 ... Q8TD43 29463718
    177 6bwi:B (3.7) BS04 Y01 ? GO:0005216 ... Q8TD43 29463718
    178 6bwi:C (3.7) BS01 Y01 ? GO:0005216 ... Q8TD43 29463718
    179 6bwi:C (3.7) BS02 Y01 ? GO:0005216 ... Q8TD43 29463718
    180 6bwi:C (3.7) BS03 Y01 ? GO:0005216 ... Q8TD43 29463718
    181 6bwi:C (3.7) BS04 Y01 ? GO:0005216 ... Q8TD43 29463718
    182 6bwi:C (3.7) BS05 Y01 ? GO:0005216 ... Q8TD43 29463718
    183 6bwi:C (3.7) BS06 Y01 ? GO:0005216 ... Q8TD43 29463718
    184 6bwi:D (3.7) BS01 Y01 ? GO:0005216 ... Q8TD43 29463718
    185 6bwi:D (3.7) BS02 Y01 ? GO:0005216 ... Q8TD43 29463718
    186 6bwi:D (3.7) BS03 Y01 ? GO:0005216 ... Q8TD43 29463718
    187 6bwi:D (3.7) BS04 Y01 ? GO:0005216 ... Q8TD43 29463718
    188 6bwi:D (3.7) BS05 Y01 ? GO:0005216 ... Q8TD43 29463718
    189 6cnj:A (3.7) BS02 Y01 ? GO:0004888 ... P43681 29720657
    190 6cnj:B (3.7) BS01 Y01 ? GO:0004888 ... P17787 29720657
    191 6cnj:B (3.7) BS02 Y01 ? GO:0004888 ... P17787 29720657
    192 6cnj:C (3.7) BS01 Y01 ? GO:0004888 ... P17787 29720657
    193 6cnj:C (3.7) BS02 Y01 ? GO:0004888 ... P17787 29720657
    194 6cnj:D (3.7) BS02 Y01 ? GO:0004888 ... P43681 29720657
    195 6cnj:D (3.7) BS03 Y01 ? GO:0004888 ... P43681 29720657
    196 6cnj:E (3.7) BS01 Y01 ? GO:0004888 ... P17787 29720657
    197 6cnj:E (3.7) BS02 Y01 ? GO:0004888 ... P17787 29720657
    198 6cnk:A (3.9) BS01 Y01 ? GO:0004888 ... P43681 29720657
    199 6cnk:A (3.9) BS02 Y01 ? GO:0004888 ... P43681 29720657
    200 6cnk:B (3.9) BS02 Y01 ? GO:0004888 ... P43681 29720657
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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