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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1xic:A (1.6) BS01 XLS 5.3.1.5 GO:0000287 ... P24300 15299449
    2 2brp:A (2.0) BS02 XLS 4.2.2.1 GO:0003824 ... Q54873 16638841
    3 2brp:A (2.0) BS03 XLS 4.2.2.1 GO:0003824 ... Q54873 16638841
    4 2brp:A (2.0) BS04 XLS 4.2.2.1 GO:0003824 ... Q54873 16638841
    5 2qw5:A (1.78) BS01 XLS ? GO:0016853 ... Q3M5E3 N/A
    6 2qw5:B (1.78) BS01 XLS ? GO:0016853 ... Q3M5E3 N/A
    7 3mxg:C (2.49) BS01 XLS ? GO:0005576 ... A7UQX3 21203383
    8 3mxg:D (2.49) BS01 XLS ? GO:0005576 ... A7UQX3 21203383
    9 3mxg:F (2.49) BS01 XLS ? GO:0005576 ... A7UQX3 21203383
    10 3mxg:J (2.49) BS01 XLS ? GO:0005576 ... A7UQX3 21203383
    11 4d5v:A (1.62) BS04 XLS 3.2.1.91 GO:0004553 ... P62694 25765184
    12 4xis:A (1.6) BS01 XLS 5.3.1.5 GO:0000287 ... P24300 2006134
    13 5nh7:A (1.9) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    14 5nh7:B (1.9) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    15 5nh7:C (1.9) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    16 5nh7:D (1.9) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    17 5nh8:A (1.86) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    18 5nh8:B (1.86) BS04 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    19 5nh8:C (1.86) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    20 5nh8:D (1.86) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    21 5nh9:A (2.08) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    22 5nh9:B (2.08) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    23 5nh9:C (2.08) BS05 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    24 5nh9:D (2.08) BS05 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    25 5nhd:A (1.8) BS01 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    26 5nhd:B (1.8) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    27 5nhd:C (1.8) BS01 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    28 5nhd:D (1.8) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    29 5nhe:A (1.86) BS01 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    30 5nhe:B (1.86) BS02 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    31 5xin:A (2.3) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    32 5xin:B (2.3) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    33 5xin:C (2.3) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    34 5xin:D (2.3) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    35 6t8e:A (1.86) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    36 6t8e:B (1.86) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    37 6t8e:C (1.86) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    38 6t8e:D (1.86) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    39 6t8f:A (2.0) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    40 6t8f:B (2.0) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    41 6t8f:C (2.0) BS04 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    42 6t8f:D (2.0) BS03 XLS 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    43 6xim:A (2.5) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    44 6xim:B (2.5) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    45 6xim:C (2.5) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    46 6xim:D (2.5) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    47 7yo7:A (1.81) BS02 XLS 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    48 7yo7:B (1.81) BS03 XLS 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    49 8cbc:A (1.4) BS03 XLS 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    50 8cbc:B (1.4) BS01 XLS 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    51 8gyy:A (2.07) BS04 XLS 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    52 8gyy:B (2.07) BS03 XLS 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    53 8xia:A (1.9) BS01 XLS 5.3.1.5 GO:0000287 ... P24300 2734296
    54 8xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    55 8xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    56 8xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    57 8xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    58 9xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    59 9xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    60 9xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    61 9xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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