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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 240 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1c10:A (2.03) BS01 XE 3.2.1.17 GO:0003796 ... P00698 9443341
    2 1c1m:A (2.2) BS02 XE 3.4.21.36 GO:0004252 ... P00772 9443341
    3 1c62:A (2.3) BS01 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    4 1c65:A (2.0) BS01 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    5 1c68:A (2.5) BS01 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    6 1c68:A (2.5) BS02 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    7 1c6b:A (2.2) BS01 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    8 1c6b:A (2.2) BS02 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    9 1c6e:A (1.9) BS01 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    10 1c6e:A (1.9) BS02 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    11 1c6h:A (1.9) BS01 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    12 1c6h:A (1.9) BS02 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    13 1c6k:A (1.9) BS01 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    14 1c6k:A (1.9) BS02 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    15 1c6n:A (2.2) BS01 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    16 1c6n:A (2.2) BS02 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    17 1c6t:A (2.0) BS01 XE 3.2.1.17 GO:0003796 ... P00720 10993735
    18 1fzh:A (2.6) BS03 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    19 1fzh:A (2.6) BS04 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    20 1fzh:B (2.6) BS04 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    21 1fzh:B (2.6) BS05 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    22 1fzh:B (2.6) BS06 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    23 1fzi:A (3.3) BS03 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    24 1fzi:B (3.3) BS03 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    25 1fzi:B (3.3) BS04 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    26 1l0z:A (1.5) BS01 XE 3.4.21.36 GO:0004252 ... P00772 12198297
    27 1l1g:A (1.5) BS02 XE 3.4.21.36 GO:0004252 ... P00772 12198297
    28 1lls:A (1.8) BS01 XE ? GO:0005515 ... P0AEX9 12217701
    29 1nxt:A (2.34) BS01 XE ? GO:0000160 ... A0A0H2UQ68 15090529
    30 1rjo:A (1.67) BS02 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    31 1rjo:A (1.67) BS03 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    32 1rjo:A (1.67) BS04 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    33 1rjo:A (1.67) BS05 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    34 1rjo:A (1.67) BS06 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    35 1rjo:A (1.67) BS07 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    36 1rky:A (1.68) BS04 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    37 1rky:A (1.68) BS05 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    38 1rky:A (1.68) BS06 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    39 1rky:A (1.68) BS07 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    40 1rky:A (1.68) BS08 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    41 1rky:A (1.68) BS09 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    42 1rky:A (1.68) BS10 XE 1.4.3.- GO:0005507 ... Q96X16 15533431
    43 1s56:A (2.43) BS02 XE ? GO:0005344 ... P9WN25 15016811
    44 1s56:A (2.43) BS03 XE ? GO:0005344 ... P9WN25 15016811
    45 1s56:A (2.43) BS04 XE ? GO:0005344 ... P9WN25 15016811
    46 1s56:B (2.43) BS02 XE ? GO:0005344 ... P9WN25 15016811
    47 1s56:B (2.43) BS03 XE ? GO:0005344 ... P9WN25 15016811
    48 1u0x:A (1.45) BS02 XE 1.7.6.1 GO:0005576 ... Q94734 15258143
    49 1u0x:A (1.45) BS03 XE 1.7.6.1 GO:0005576 ... Q94734 15258143
    50 1uo6:A (1.65) BS01 XE 3.4.21.36 GO:0004252 ... P00772 14684889
    51 1ury:A (2.4) BS02 XE 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    52 1ury:A (2.4) BS03 XE 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    53 1ury:A (2.4) BS05 XE 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    54 1ury:B (2.4) BS03 XE 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    55 1ury:B (2.4) BS04 XE 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    56 1ury:B (2.4) BS05 XE 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    57 1uvx:A (2.45) BS03 XE ? GO:0015671 ... Q08753 15016811
    58 1uvx:A (2.45) BS04 XE ? GO:0015671 ... Q08753 15016811
    59 1uvx:A (2.45) BS05 XE ? GO:0015671 ... Q08753 15016811
    60 1uvy:A (2.4) BS02 XE ? GO:0005344 ... P15160 15016811
    61 1ux9:A (2.4) BS01 XE 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    62 1ux9:A (2.4) BS03 XE 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    63 1ux9:A (2.4) BS04 XE 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    64 1ux9:B (2.4) BS03 XE 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    65 1ux9:B (2.4) BS04 XE 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    66 1ux9:B (2.4) BS05 XE 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    67 1uyu:A (2.0) BS03 XE 1.14.15.1 GO:0004497 ... P00183 15219983
    68 1uyu:A (2.0) BS04 XE 1.14.15.1 GO:0004497 ... P00183 15219983
    69 1uyu:A (2.0) BS05 XE 1.14.15.1 GO:0004497 ... P00183 15219983
    70 1uyu:A (2.0) BS06 XE 1.14.15.1 GO:0004497 ... P00183 15219983
    71 1uyu:B (2.0) BS03 XE 1.14.15.1 GO:0004497 ... P00183 15219983
    72 1uyu:B (2.0) BS04 XE 1.14.15.1 GO:0004497 ... P00183 15219983
    73 1w2z:A (2.24) BS03 XE 1.4.3.21 GO:0005507 ... Q43077 15533431
    74 1w2z:A (2.24) BS04 XE 1.4.3.21 GO:0005507 ... Q43077 15533431
    75 1w2z:B (2.24) BS03 XE 1.4.3.21 GO:0005507 ... Q43077 15533431
    76 1w2z:B (2.24) BS04 XE 1.4.3.21 GO:0005507 ... Q43077 15533431
    77 1w2z:C (2.24) BS03 XE 1.4.3.21 GO:0005507 ... Q43077 15533431
    78 1w2z:C (2.24) BS04 XE 1.4.3.21 GO:0005507 ... Q43077 15533431
    79 1w2z:D (2.24) BS03 XE 1.4.3.21 GO:0005507 ... Q43077 15533431
    80 1w2z:D (2.24) BS04 XE 1.4.3.21 GO:0005507 ... Q43077 15533431
    81 1zdm:A (2.4) BS02 XE ? GO:0000156 ... P0AE67 15741343
    82 1zdm:B (2.4) BS02 XE ? GO:0000156 ... P0AE67 15741343
    83 2b2j:A (1.85) BS01 XE ? GO:0005886 ... O29285 16214888
    84 2b2j:A (1.85) BS02 XE ? GO:0005886 ... O29285 16214888
    85 2b2j:A (1.85) BS03 XE ? GO:0005886 ... O29285 16214888
    86 2b2j:A (1.85) BS04 XE ? GO:0005886 ... O29285 16214888
    87 2b2j:A (1.85) BS05 XE ? GO:0005886 ... O29285 16214888
    88 2b2j:A (1.85) BS06 XE ? GO:0005886 ... O29285 16214888
    89 2b2j:A (1.85) BS07 XE ? GO:0005886 ... O29285 16214888
    90 2b2j:A (1.85) BS08 XE ? GO:0005886 ... O29285 16214888
    91 2b2j:A (1.85) BS09 XE ? GO:0005886 ... O29285 16214888
    92 2b2j:A (1.85) BS10 XE ? GO:0005886 ... O29285 16214888
    93 2dki:A (2.5) BS02 XE 1.14.13.23 GO:0016491 ... Q6SSJ6 17045293
    94 2dki:A (2.5) BS03 XE 1.14.13.23 GO:0016491 ... Q6SSJ6 17045293
    95 2ie6:A (1.83) BS07 XE ? GO:0001786 ... P14668 17028130
    96 2w0q:A (2.48) BS04 XE 1.4.3.21 GO:0005507 ... P46883 19052360
    97 2w0q:A (2.48) BS05 XE 1.4.3.21 GO:0005507 ... P46883 19052360
    98 2w0q:A (2.48) BS06 XE 1.4.3.21 GO:0005507 ... P46883 19052360
    99 2w0q:A (2.48) BS07 XE 1.4.3.21 GO:0005507 ... P46883 19052360
    100 2w0q:A (2.48) BS08 XE 1.4.3.21 GO:0005507 ... P46883 19052360
    101 2w0q:A (2.48) BS09 XE 1.4.3.21 GO:0005507 ... P46883 19052360
    102 2w0q:A (2.48) BS10 XE 1.4.3.21 GO:0005507 ... P46883 19052360
    103 2w0q:B (2.48) BS05 XE 1.4.3.21 GO:0005507 ... P46883 19052360
    104 2w0q:B (2.48) BS06 XE 1.4.3.21 GO:0005507 ... P46883 19052360
    105 2w0q:B (2.48) BS07 XE 1.4.3.21 GO:0005507 ... P46883 19052360
    106 2w0q:B (2.48) BS08 XE 1.4.3.21 GO:0005507 ... P46883 19052360
    107 2w6v:A (1.8) BS02 XE ? GO:0004601 ... P69905 19365817
    108 2w6v:A (1.8) BS03 XE ? GO:0004601 ... P69905 19365817
    109 2w6v:A (1.8) BS04 XE ? GO:0004601 ... P69905 19365817
    110 2w6v:B (1.8) BS02 XE ? GO:0004601 ... P68871 19365817
    111 2w6v:C (1.8) BS02 XE ? GO:0004601 ... P69905 19365817
    112 2w6v:C (1.8) BS03 XE ? GO:0004601 ... P69905 19365817
    113 2w6v:C (1.8) BS04 XE ? GO:0004601 ... P69905 19365817
    114 2w6v:D (1.8) BS02 XE ? GO:0004601 ... P68871 19365817
    115 2w6v:D (1.8) BS03 XE ? GO:0004601 ... P68871 19365817
    116 2w6w:A (1.99) BS02 XE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 19365817
    117 2w6w:A (1.99) BS03 XE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 19365817
    118 2w72:A (1.07) BS02 XE ? GO:0004601 ... P69905 19365817
    119 2w72:A (1.07) BS03 XE ? GO:0004601 ... P69905 19365817
    120 2w72:A (1.07) BS04 XE ? GO:0004601 ... P69905 19365817
    121 2w72:A (1.07) BS05 XE ? GO:0004601 ... P69905 19365817
    122 2w72:A (1.07) BS06 XE ? GO:0004601 ... P69905 19365817
    123 2w72:B (1.07) BS02 XE ? GO:0004601 ... P68871 19365817
    124 2w72:B (1.07) BS03 XE ? GO:0004601 ... P68871 19365817
    125 2w72:C (1.07) BS02 XE ? GO:0004601 ... P69905 19365817
    126 2w72:C (1.07) BS03 XE ? GO:0004601 ... P69905 19365817
    127 2w72:C (1.07) BS04 XE ? GO:0004601 ... P69905 19365817
    128 2w72:D (1.07) BS02 XE ? GO:0004601 ... P68871 19365817
    129 2w72:D (1.07) BS03 XE ? GO:0004601 ... P68871 19365817
    130 2xkh:A (2.31) BS03 XE ? GO:0005344 ... O76242 21147768
    131 2zfe:A (2.5) BS02 XE ? GO:0005216 ... P02945 18930734
    132 3c9i:B (1.95) BS02 XE ? GO:0044694 ... P35837 19241380
    133 3c9i:C (1.95) BS01 XE ? GO:0044694 ... P35837 19241380
    134 3c9i:C (1.95) BS02 XE ? GO:0044694 ... P35837 19241380
    135 3c9i:C (1.95) BS04 XE ? GO:0044694 ... P35837 19241380
    136 3c9i:E (1.95) BS01 XE ? GO:0044694 ... P35837 19241380
    137 3c9i:F (1.95) BS01 XE ? GO:0044694 ... P35837 19241380
    138 3cyu:A (1.7) BS04 XE 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18461940
    139 3g46:A (0.91) BS03 XE ? GO:0001666 ... P02213 19913484
    140 3g46:A (0.91) BS04 XE ? GO:0001666 ... P02213 19913484
    141 3g46:B (0.91) BS03 XE ? GO:0001666 ... P02213 19913484
    142 3g46:B (0.91) BS04 XE ? GO:0001666 ... P02213 19913484
    143 3pjk:A (1.701) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    144 3pjk:A (1.701) BS03 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    145 3pk4:A (1.85) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    146 3pk4:A (1.85) BS03 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    147 3pk5:A (1.75) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    148 3pk6:A (1.8) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    149 3pkf:A (1.65) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    150 3pkg:A (1.602) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    151 3pkg:A (1.602) BS03 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    152 3pkh:A (1.71) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    153 3pkh:A (1.71) BS03 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    154 3pkk:A (1.733) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    155 3pkl:A (1.749) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    156 3ple:A (1.6) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    157 3plg:A (1.601) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    158 3plh:A (1.8) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    159 3plh:A (1.8) BS03 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    160 3pli:A (1.68) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    161 3pli:A (1.68) BS03 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    162 3plj:A (1.732) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    163 3plm:A (1.621) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    164 3plm:A (1.621) BS03 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    165 3qpk:A (1.9) BS05 XE 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    166 3qpk:A (1.9) BS06 XE 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    167 3qpk:A (1.9) BS07 XE 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    168 3qpk:B (1.9) BS05 XE 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    169 3qpk:B (1.9) BS06 XE 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    170 3qpk:B (1.9) BS07 XE 1.10.3.2 GO:0005507 ... Q70KY3 21524088
    171 3s23:A (1.9484) BS04 XE 2.3.3.20 GO:0004315 ... Q8PDX2 22524624
    172 3s23:A (1.9484) BS05 XE 2.3.3.20 GO:0004315 ... Q8PDX2 22524624
    173 3tf1:A (2.0369) BS03 XE ? GO:0020037 ... Q8RBX6 21997213
    174 3tf1:B (2.0369) BS03 XE ? GO:0020037 ... Q8RBX6 21997213
    175 3tf1:B (2.0369) BS04 XE ? GO:0020037 ... Q8RBX6 21997213
    176 3tf9:B (2.5901) BS02 XE ? GO:0020037 ... Q8YUQ7 21997213
    177 3tfa:A (2.2711) BS02 XE ? GO:0020037 ... Q8YUQ7 21997213
    178 3tfa:B (2.2711) BS02 XE ? GO:0020037 ... Q8YUQ7 21997213
    179 3tfe:A (1.991) BS02 XE ? GO:0020037 ... Q8YUQ7 21997213
    180 3tfe:B (1.991) BS02 XE ? GO:0020037 ... Q8YUQ7 21997213
    181 3zjs:A (2.3) BS03 XE ? GO:0019825 ... Q8TLY9 23776624
    182 3zjs:B (2.3) BS03 XE ? GO:0019825 ... Q8TLY9 23776624
    183 4guv:A (2.73) BS02 XE 1.14.13.231 GO:0000166 ... Q93L51 23999299
    184 4guv:A (2.73) BS03 XE 1.14.13.231 GO:0000166 ... Q93L51 23999299
    185 4guv:B (2.73) BS02 XE 1.14.13.231 GO:0000166 ... Q93L51 23999299
    186 4guv:B (2.73) BS03 XE 1.14.13.231 GO:0000166 ... Q93L51 23999299
    187 4guv:C (2.73) BS02 XE 1.14.13.231 GO:0000166 ... Q93L51 23999299
    188 4guv:C (2.73) BS03 XE 1.14.13.231 GO:0000166 ... Q93L51 23999299
    189 4guv:D (2.73) BS02 XE 1.14.13.231 GO:0000166 ... Q93L51 23999299
    190 4guv:D (2.73) BS03 XE 1.14.13.231 GO:0000166 ... Q93L51 23999299
    191 4l78:A (2.18) BS03 XE 6.3.5.3 GO:0004642 ... P74881 24223728
    192 4l78:A (2.18) BS04 XE 6.3.5.3 GO:0004642 ... P74881 24223728
    193 4l78:A (2.18) BS05 XE 6.3.5.3 GO:0004642 ... P74881 24223728
    194 4l78:A (2.18) BS06 XE 6.3.5.3 GO:0004642 ... P74881 24223728
    195 4l78:A (2.18) BS07 XE 6.3.5.3 GO:0004642 ... P74881 24223728
    196 4mgh:A (2.65) BS03 XE 6.3.5.3 GO:0004642 ... P74881 24223728
    197 4mgh:A (2.65) BS04 XE 6.3.5.3 GO:0004642 ... P74881 24223728
    198 4mgh:A (2.65) BS05 XE 6.3.5.3 GO:0004642 ... P74881 24223728
    199 4nwh:A (1.65) BS01 XE 3.2.1.17 GO:0003796 ... P00698 25211169
    200 4nxa:A (1.6) BS04 XE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 25211169
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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