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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2w54:A (3.3) BS04 XAX 1.1.1.204 GO:0000166 ... O54050 19109249
    2 2w54:B (3.3) BS01 XAX 1.1.1.204 GO:0005506 ... O54051 19109249
    3 2w54:C (3.3) BS04 XAX 1.1.1.204 GO:0000166 ... O54050 19109249
    4 2w54:D (3.3) BS01 XAX 1.1.1.204 GO:0005506 ... O54051 19109249
    5 2w54:E (3.3) BS04 XAX 1.1.1.204 GO:0000166 ... O54050 19109249
    6 2w54:F (3.3) BS01 XAX 1.1.1.204 GO:0005506 ... O54051 19109249
    7 2w54:G (3.3) BS04 XAX 1.1.1.204 GO:0000166 ... O54050 19109249
    8 2w54:H (3.3) BS01 XAX 1.1.1.204 GO:0005506 ... O54051 19109249
    9 2w55:B (3.4) BS01 XAX 1.1.1.204 GO:0005506 ... O54051 19109249
    10 2w55:D (3.4) BS01 XAX 1.1.1.204 GO:0005506 ... O54051 19109249
    11 2w55:F (3.4) BS01 XAX 1.1.1.204 GO:0005506 ... O54051 19109249
    12 2w55:H (3.4) BS01 XAX 1.1.1.204 GO:0005506 ... O54051 19109249
    13 3ax7:A (2.34) BS04 XAX 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    14 3ax7:B (2.34) BS04 XAX 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    15 3ax9:A (2.3) BS04 XAX 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    16 3ax9:B (2.3) BS04 XAX 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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