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BioLiP
Download all results in tab-seperated text for 130 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8wm6:A (2.7) BS43 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    2 8wm6:A (2.7) BS44 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    3 8wm6:A (2.7) BS45 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    4 8wm6:A (2.7) BS57 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    5 8wm6:B (2.7) BS49 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    6 8wm6:B (2.7) BS50 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    7 8wm6:B (2.7) BS51 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    8 8wm6:B (2.7) BS52 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    9 8wm6:B (2.7) BS54 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    10 8wm6:F (2.7) BS08 WVN ? N/A A6MVU7 38734819
    11 8wm6:F (2.7) BS09 WVN ? N/A A6MVU7 38734819
    12 8wm6:I (2.7) BS05 WVN ? GO:0009507 ... A6MVV1 38734819
    13 8wm6:J (2.7) BS06 WVN ? GO:0009507 ... A6MVU6 38734819
    14 8wm6:K (2.7) BS04 WVN ? GO:0009507 ... A6MVS9 38734819
    15 8wm6:K (2.7) BS06 WVN ? GO:0009507 ... A6MVS9 38734819
    16 8wm6:L (2.7) BS08 WVN ? GO:0009507 ... A6MVV8 38734819
    17 8wm6:L (2.7) BS12 WVN ? GO:0009507 ... A6MVV8 38734819
    18 8wm6:M (2.7) BS02 WVN ? GO:0009507 ... A6MVT4 38734819
    19 8wm6:R (2.7) BS04 WVN N/A N/A N/A 38734819
    20 8wm6:e (2.7) BS15 WVN N/A N/A N/A 38734819
    21 8wm6:h (2.7) BS08 WVN N/A N/A N/A 38734819
    22 8wm6:i (2.7) BS15 WVN N/A N/A N/A 38734819
    23 8wm6:j (2.7) BS03 WVN N/A N/A N/A 38734819
    24 8wm6:l (2.7) BS04 WVN N/A N/A N/A 38734819
    25 8wm6:l (2.7) BS18 WVN N/A N/A N/A 38734819
    26 8wm6:s (2.7) BS05 WVN N/A N/A N/A 38734819
    27 8wmj:A (3.0) BS45 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    28 8wmj:A (3.0) BS46 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    29 8wmj:A (3.0) BS47 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    30 8wmj:A (3.0) BS48 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    31 8wmj:A (3.0) BS49 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    32 8wmj:B (3.0) BS49 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    33 8wmj:B (3.0) BS50 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    34 8wmj:B (3.0) BS51 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    35 8wmj:B (3.0) BS52 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    36 8wmj:B (3.0) BS55 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    37 8wmj:B (3.0) BS57 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    38 8wmj:F (3.0) BS08 WVN ? N/A A6MVU7 38734819
    39 8wmj:I (3.0) BS04 WVN ? GO:0009507 ... A6MVV1 38734819
    40 8wmj:I (3.0) BS05 WVN ? GO:0009507 ... A6MVV1 38734819
    41 8wmj:J (3.0) BS06 WVN ? GO:0009507 ... A6MVU6 38734819
    42 8wmj:J (3.0) BS07 WVN ? GO:0009507 ... A6MVU6 38734819
    43 8wmj:K (3.0) BS04 WVN ? GO:0009507 ... A6MVS9 38734819
    44 8wmj:K (3.0) BS07 WVN ? GO:0009507 ... A6MVS9 38734819
    45 8wmj:L (3.0) BS06 WVN ? GO:0009507 ... A6MVV8 38734819
    46 8wmj:L (3.0) BS10 WVN ? GO:0009507 ... A6MVV8 38734819
    47 8wmj:M (3.0) BS02 WVN ? GO:0009507 ... A6MVT4 38734819
    48 8wmj:R (3.0) BS04 WVN N/A N/A N/A 38734819
    49 8wmj:i (3.0) BS15 WVN N/A N/A N/A 38734819
    50 8wmj:j (3.0) BS03 WVN N/A N/A N/A 38734819
    51 8wmj:l (3.0) BS04 WVN N/A N/A N/A 38734819
    52 8wmj:l (3.0) BS17 WVN N/A N/A N/A 38734819
    53 8wmj:s (3.0) BS05 WVN N/A N/A N/A 38734819
    54 8wmv:A (2.94) BS44 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    55 8wmv:A (2.94) BS45 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    56 8wmv:A (2.94) BS46 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    57 8wmv:A (2.94) BS47 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    58 8wmv:A (2.94) BS58 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    59 8wmv:B (2.94) BS49 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    60 8wmv:B (2.94) BS50 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    61 8wmv:B (2.94) BS51 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    62 8wmv:B (2.94) BS53 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    63 8wmv:I (2.94) BS03 WVN ? GO:0009507 ... A6MVV1 38734819
    64 8wmv:J (2.94) BS05 WVN ? GO:0009507 ... A6MVU6 38734819
    65 8wmv:K (2.94) BS02 WVN ? GO:0009507 ... A6MVS9 38734819
    66 8wmv:K (2.94) BS05 WVN ? GO:0009507 ... A6MVS9 38734819
    67 8wmv:L (2.94) BS06 WVN ? GO:0009507 ... A6MVV8 38734819
    68 8wmv:L (2.94) BS10 WVN ? GO:0009507 ... A6MVV8 38734819
    69 8wmv:M (2.94) BS01 WVN ? GO:0009507 ... A6MVT4 38734819
    70 8wmv:e (2.94) BS14 WVN N/A N/A N/A 38734819
    71 8wmv:h (2.94) BS08 WVN N/A N/A N/A 38734819
    72 8wmv:i (2.94) BS13 WVN N/A N/A N/A 38734819
    73 8wmv:l (2.94) BS02 WVN N/A N/A N/A 38734819
    74 8wmv:s (2.94) BS05 WVN N/A N/A N/A 38734819
    75 8wmw:A (3.3) BS44 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    76 8wmw:A (3.3) BS45 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    77 8wmw:A (3.3) BS46 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    78 8wmw:A (3.3) BS47 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    79 8wmw:A (3.3) BS48 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    80 8wmw:B (3.3) BS46 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    81 8wmw:B (3.3) BS47 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    82 8wmw:B (3.3) BS48 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    83 8wmw:B (3.3) BS49 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    84 8wmw:B (3.3) BS51 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    85 8wmw:F (3.3) BS06 WVN ? N/A A6MVU7 38734819
    86 8wmw:I (3.3) BS04 WVN ? GO:0009507 ... A6MVV1 38734819
    87 8wmw:J (3.3) BS05 WVN ? GO:0009507 ... A6MVU6 38734819
    88 8wmw:K (3.3) BS03 WVN ? GO:0009507 ... A6MVS9 38734819
    89 8wmw:L (3.3) BS05 WVN ? GO:0009507 ... A6MVV8 38734819
    90 8wmw:L (3.3) BS09 WVN ? GO:0009507 ... A6MVV8 38734819
    91 8wmw:M (3.3) BS02 WVN ? GO:0009507 ... A6MVT4 38734819
    92 8wmw:e (3.3) BS15 WVN N/A N/A N/A 38734819
    93 8wmw:h (3.3) BS08 WVN N/A N/A N/A 38734819
    94 8wmw:i (3.3) BS15 WVN N/A N/A N/A 38734819
    95 8wmw:j (3.3) BS04 WVN N/A N/A N/A 38734819
    96 8xlp:3 (2.57) BS16 WVN N/A N/A N/A N/A
    97 8xlp:5 (2.57) BS23 WVN N/A N/A N/A N/A
    98 8xlp:6 (2.57) BS16 WVN N/A N/A N/A N/A
    99 8xlp:A (2.57) BS06 WVN N/A GO:0005506 ... A6MVT2 N/A
    100 8xlp:B (2.57) BS17 WVN N/A GO:0009507 ... A6MW31 N/A
    101 8xlp:B (2.57) BS18 WVN N/A GO:0009507 ... A6MW31 N/A
    102 8xlp:B (2.57) BS19 WVN N/A GO:0009507 ... A6MW31 N/A
    103 8xlp:C (2.57) BS14 WVN N/A N/A A6MVR2 N/A
    104 8xlp:C (2.57) BS15 WVN N/A N/A A6MVR2 N/A
    105 8xlp:C (2.57) BS16 WVN N/A N/A A6MVR2 N/A
    106 8xlp:D (2.57) BS10 WVN N/A GO:0005506 ... A6MVR3 N/A
    107 8xlp:F (2.57) BS01 WVN N/A GO:0005506 ... A6MVV4 N/A
    108 8xlp:H (2.57) BS05 WVN N/A GO:0009507 ... A6MW35 N/A
    109 8xlp:I (2.57) BS02 WVN N/A GO:0005737 ... A6MVW0 N/A
    110 8xlp:K (2.57) BS03 WVN N/A GO:0005737 ... A6MVZ3 N/A
    111 8xlp:K (2.57) BS04 WVN N/A GO:0005737 ... A6MVZ3 N/A
    112 8xlp:P (2.57) BS16 WVN N/A N/A N/A N/A
    113 8xlp:S (2.57) BS16 WVN N/A N/A N/A N/A
    114 8xlp:Y (2.57) BS01 WVN N/A GO:0009507 ... A6MVU9 N/A
    115 8xlp:a (2.57) BS06 WVN N/A GO:0005506 ... A6MVT2 N/A
    116 8xlp:b (2.57) BS17 WVN N/A GO:0009507 ... A6MW31 N/A
    117 8xlp:b (2.57) BS18 WVN N/A GO:0009507 ... A6MW31 N/A
    118 8xlp:b (2.57) BS19 WVN N/A GO:0009507 ... A6MW31 N/A
    119 8xlp:c (2.57) BS14 WVN N/A N/A A6MVR2 N/A
    120 8xlp:c (2.57) BS15 WVN N/A N/A A6MVR2 N/A
    121 8xlp:c (2.57) BS16 WVN N/A N/A A6MVR2 N/A
    122 8xlp:d (2.57) BS10 WVN N/A GO:0005506 ... A6MVR3 N/A
    123 8xlp:f (2.57) BS01 WVN N/A GO:0005506 ... A6MVV4 N/A
    124 8xlp:h (2.57) BS05 WVN N/A GO:0009507 ... A6MW35 N/A
    125 8xlp:i (2.57) BS02 WVN N/A GO:0005737 ... A6MVW0 N/A
    126 8xlp:k (2.57) BS02 WVN N/A GO:0005737 ... A6MVZ3 N/A
    127 8xlp:k (2.57) BS03 WVN N/A GO:0005737 ... A6MVZ3 N/A
    128 8xlp:m (2.57) BS01 WVN N/A N/A N/A N/A
    129 8xlp:y (2.57) BS01 WVN N/A GO:0009507 ... A6MVU9 N/A
    130 8xlp:z (2.57) BS01 WVN N/A N/A A6MVZ2 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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