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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 209 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1atg:A (1.2) BS01 WO4 ? GO:0015689 ... Q7SIH2 9862806
    2 1bys:A (2.0) BS01 WO4 3.1.4.4 GO:0003824 ... Q79SE0 10074947
    3 1ckj:A (2.46) BS01 WO4 2.7.11.1
    2.7.11.26    		 GO:0004672 ... Q06486 8648628
    4 1ckj:B (2.46) BS01 WO4 2.7.11.1
    2.7.11.26    		 GO:0004672 ... Q06486 8648628
    5 1cws:A (2.0) BS01 WO4 3.1.3.48 GO:0004725 ... P30305 10543950 BindingDB: IC50=30000nM
    6 1dko:A (2.38) BS01 WO4 3.1.3.-
    3.6.1.-    		 GO:0003924 ... P07102 10655611
    7 1e3p:A (2.5) BS01 WO4 2.7.7.8 GO:0000175 ... Q53597 11080643
    8 1fez:B (3.0) BS01 WO4 3.11.1.1 GO:0000287 ... O31156 10956028
    9 1fez:D (3.0) BS01 WO4 3.11.1.1 GO:0000287 ... O31156 10956028
    10 1fr3:A (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    11 1fr3:A (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    12 1fr3:A (1.5) BS03 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13 1fr3:B (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    14 1fr3:B (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    15 1fr3:C (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    16 1fr3:C (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    17 1fr3:D (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    18 1fr3:D (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    19 1fr3:E (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    20 1fr3:E (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    21 1fr3:F (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    22 1fr3:F (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    23 1fr3:F (1.5) BS03 WO4 ? GO:0015689 ... Q7SIF7 11080635
    24 1fr3:G (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    25 1fr3:G (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    26 1fr3:H (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    27 1fr3:H (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    28 1fr3:I (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    29 1fr3:I (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    30 1fr3:I (1.5) BS03 WO4 ? GO:0015689 ... Q7SIF7 11080635
    31 1fr3:J (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    32 1fr3:J (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    33 1fr3:K (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    34 1fr3:K (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    35 1fr3:L (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    36 1fr3:L (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    37 1fr3:L (1.5) BS03 WO4 ? GO:0015689 ... Q7SIF7 11080635
    38 1gug:A (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    39 1gug:A (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    40 1gug:B (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    41 1gug:B (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    42 1gug:C (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    43 1gug:C (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    44 1gug:D (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    45 1gug:D (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    46 1gug:E (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    47 1gug:E (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    48 1gug:F (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    49 1gug:F (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    50 1h9r:A (1.9) BS01 WO4 ? GO:0015689 ... P0A9G8 11259434
    51 1h9r:A (1.9) BS02 WO4 ? GO:0015689 ... P0A9G8 11259434
    52 1h9r:B (1.9) BS01 WO4 ? GO:0015689 ... P0A9G8 11259434
    53 1h9r:B (1.9) BS02 WO4 ? GO:0015689 ... P0A9G8 11259434
    54 1j9k:A (2.1) BS02 WO4 3.1.3.5 GO:0000166 ... P96112 11524683
    55 1j9k:B (2.1) BS02 WO4 3.1.3.5 GO:0000166 ... P96112 11524683
    56 1lgp:A (2.0) BS01 WO4 2.3.2.27 N/A Q96EP1 12121644
    57 1mu7:A (2.0) BS01 WO4 3.1.4.- GO:0005634 ... Q9NUW8 12470949
    58 1mu7:B (2.0) BS01 WO4 3.1.4.- GO:0005634 ... Q9NUW8 12470949
    59 1ohd:A (2.6) BS01 WO4 3.1.3.16
    3.1.3.48    		 GO:0006470 ... O60729 12853468
    60 1u7p:A (1.9) BS02 WO4 3.1.3.-
    3.1.3.48    		 GO:0004721 ... Q9D967 15461449
    61 1u7p:C (1.9) BS02 WO4 3.1.3.-
    3.1.3.48    		 GO:0004721 ... Q9D967 15461449
    62 1ujc:A (1.9) BS01 WO4 3.1.3.- GO:0004721 ... P76502 15670209
    63 1wod:A (1.75) BS01 WO4 ? GO:0015412 ... P37329 9302996
    64 1ytw:A (2.4) BS01 WO4 3.1.3.48 GO:0004725 ... P15273 8702535
    65 1z26:A (2.5) BS01 WO4 3.1.24.- GO:0003676 ... Q8U3D2 15800637
    66 1z26:A (2.5) BS02 WO4 3.1.24.- GO:0003676 ... Q8U3D2 15800637
    67 1z26:A (2.5) BS03 WO4 3.1.24.- GO:0003676 ... Q8U3D2 15800637
    68 2akc:A (2.3) BS01 WO4 3.1.3.2 GO:0003993 ... Q8KRU6 17263560
    69 2akc:B (2.3) BS01 WO4 3.1.3.2 GO:0003993 ... Q8KRU6 17263560
    70 2akc:C (2.3) BS01 WO4 3.1.3.2 GO:0003993 ... Q8KRU6 17263560
    71 2akc:D (2.3) BS01 WO4 3.1.3.2 GO:0003993 ... Q8KRU6 17263560
    72 2e6b:A (2.5) BS02 WO4 3.1.3.5 GO:0000166 ... Q53W92 17561111
    73 2e6b:B (2.5) BS02 WO4 3.1.3.5 GO:0000166 ... Q53W92 17561111
    74 2e6b:C (2.5) BS02 WO4 3.1.3.5 GO:0000166 ... Q53W92 17561111
    75 2e6b:D (2.5) BS02 WO4 3.1.3.5 GO:0000166 ... Q53W92 17561111
    76 2hcm:A (2.0) BS01 WO4 3.1.3.16
    3.1.3.48    		 GO:0004721 ... Q8BTR5 18058037
    77 2hnq:A (2.85) BS01 WO4 3.1.3.48 GO:0004725 ... P18031 8128219
    78 2i34:A (2.0) BS02 WO4 3.1.3.2 GO:0009279 ... A0A6L7HE29 N/A
    79 2i34:B (2.0) BS02 WO4 3.1.3.2 GO:0009279 ... A0A6L7HE29 N/A
    80 2i6m:A (1.9) BS01 WO4 3.1.3.48 GO:0004725 ... Q97VZ7 17173287
    81 2ivo:A (2.9) BS01 WO4 2.3.1.234 GO:0000049 ... Q9UXT7 17766251
    82 2ivo:A (2.9) BS02 WO4 2.3.1.234 GO:0000049 ... Q9UXT7 17766251
    83 2ivo:B (2.9) BS01 WO4 2.3.1.234 GO:0000049 ... Q9UXT7 17766251
    84 2ivo:C (2.9) BS01 WO4 2.3.1.234 GO:0000049 ... Q9UXT7 17766251
    85 2ivo:C (2.9) BS02 WO4 2.3.1.234 GO:0000049 ... Q9UXT7 17766251
    86 2onk:E (3.1) BS01 WO4 ? GO:0005886 ... O30142 17322901
    87 2onk:J (3.1) BS01 WO4 ? GO:0005886 ... O30142 17322901
    88 2ons:A (1.55) BS01 WO4 ? GO:0005886 ... O30142 17322901
    89 2oyc:A (1.72) BS01 WO4 3.1.3.16
    3.1.3.74    		 GO:0000287 ... Q96GD0 18058037
    90 3c7t:A (1.76) BS01 WO4 3.1.3.-
    3.1.3.48    		 N/A Q7YTB0 18937503
    91 3c7t:B (1.76) BS01 WO4 3.1.3.-
    3.1.3.48    		 N/A Q7YTB0 18937503
    92 3c7t:C (1.76) BS01 WO4 3.1.3.-
    3.1.3.48    		 N/A Q7YTB0 18937503
    93 3c7t:D (1.76) BS01 WO4 3.1.3.-
    3.1.3.48    		 N/A Q7YTB0 18937503
    94 3cfx:A (1.6) BS03 WO4 ? GO:1901359 ... Q8TTZ5 19234723
    95 3cfx:B (1.6) BS03 WO4 ? GO:1901359 ... Q8TTZ5 19234723
    96 3cfz:A (1.7) BS01 WO4 ? GO:1901359 ... Q58586 19234723
    97 3cg1:A (1.6) BS01 WO4 ? GO:0005886 ... Q8U4K5 19234723
    98 3cg1:B (1.6) BS01 WO4 ? GO:0005886 ... Q8U4K5 19234723
    99 3cg3:A (1.8) BS01 WO4 ? GO:0005886 ... O57890 19234723
    100 3cij:A (1.07) BS01 WO4 ? GO:0005886 ... O30142 19234723
    101 3cij:B (1.07) BS01 WO4 ? GO:0005886 ... O30142 19234723
    102 3d31:A (3.0) BS01 WO4 7.3.2.6 GO:0005515 ... Q8TTZ3 18511655
    103 3d31:A (3.0) BS02 WO4 7.3.2.6 GO:0005515 ... Q8TTZ3 18511655
    104 3d31:B (3.0) BS01 WO4 7.3.2.6 GO:0005515 ... Q8TTZ3 18511655
    105 3e84:A (1.85) BS02 WO4 3.1.3.103 GO:0016787 ... Q8A712 18986982
    106 3e84:B (1.85) BS02 WO4 3.1.3.103 GO:0016787 ... Q8A712 18986982
    107 3e84:C (1.85) BS02 WO4 3.1.3.103 GO:0016787 ... Q8A712 18986982
    108 3e84:D (1.85) BS02 WO4 3.1.3.103 GO:0016787 ... Q8A712 18986982
    109 3et5:A (2.0) BS02 WO4 3.1.3.2 GO:0009279 ... Q4QMM5 17824671
    110 3f9a:A (1.69) BS01 WO4 3.1.3.48 GO:0004725 ... P15273 19140798
    111 3f9a:A (1.69) BS02 WO4 3.1.3.48 GO:0004725 ... P15273 19140798
    112 3h1c:A (3.57) BS03 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    113 3h1c:B (3.57) BS03 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    114 3h1c:B (3.57) BS04 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    115 3h1c:C (3.57) BS04 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    116 3h1c:G (3.57) BS03 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    117 3h1c:I (3.57) BS03 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    118 3h1c:K (3.57) BS04 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    119 3h1c:M (3.57) BS03 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    120 3h1c:O (3.57) BS03 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    121 3h1c:R (3.57) BS03 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    122 3h1c:T (3.57) BS03 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    123 3h1c:T (3.57) BS04 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    124 3h1c:V (3.57) BS03 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    125 3h1c:X (3.57) BS03 WO4 2.7.7.8 GO:0003723 ... P05055 19327365
    126 3kbp:A (3.0) BS03 WO4 3.1.3.2 GO:0003993 ... P80366 8683579
    127 3kbp:B (3.0) BS03 WO4 3.1.3.2 GO:0003993 ... P80366 8683579
    128 3kbp:C (3.0) BS03 WO4 3.1.3.2 GO:0003993 ... P80366 8683579
    129 3kbp:D (3.0) BS03 WO4 3.1.3.2 GO:0003993 ... P80366 8683579
    130 3psa:A (1.7) BS01 WO4 ? GO:0005515 ... P44206 22078568
    131 3rvs:A (2.1) BS02 WO4 ? GO:0000156 ... P0AE67 25928369
    132 3rvs:B (2.1) BS02 WO4 ? GO:0000156 ... P0AE67 25928369
    133 4ggk:A (2.1) BS02 WO4 3.1.4.- GO:0003824 ... Q5SWZ9 23064227
    134 4rxl:A (1.52) BS01 WO4 ? GO:0015689 ... Q9KLL7 N/A
    135 5c66:A (2.03) BS04 WO4 3.1.3.1 GO:0000287 ... P00634 27189921
    136 5c66:B (2.03) BS04 WO4 3.1.3.1 GO:0000287 ... P00634 27189921
    137 5erv:A (1.8) BS02 WO4 2.10.1.1
    2.7.7.75    		 GO:0006777 ... Q03555 27112598
    138 5jki:A (2.25) BS01 WO4 3.1.3.27 GO:0005886 ... O34349 28168443
    139 5vjw:A (1.8) BS03 WO4 3.1.3.48 GO:0004721 ... Q9SR62 29615518
    140 5vjw:A (1.8) BS04 WO4 3.1.3.48 GO:0004721 ... Q9SR62 29615518
    141 6drb:A (2.745) BS01 WO4 3.1.3.48 GO:0004725 ... O68720 30110154
    142 6eth:A (1.64) BS02 WO4 2.10.1.1
    2.7.7.75    		 GO:0006777 ... Q39054 29717023
    143 6fmx:A (1.79) BS01 WO4 3.1.3.27 GO:0005886 ... O34349 30272004
    144 6ohm:A (1.895) BS01 WO4 3.1.4.4 GO:0003824 ... O14939 32042197
    145 6ohm:B (1.895) BS01 WO4 3.1.4.4 GO:0003824 ... O14939 32042197
    146 6xed:A (1.795) BS01 WO4 3.1.3.48 GO:0004725 ... P18031 36507179
    147 6xeg:A (2.549) BS02 WO4 3.1.3.48 GO:0004725 ... P18031 36507179
    148 7t5a:A (2.16) BS01 WO4 ? GO:0015689 ... Q9I2N2 35685933
    149 7t5a:B (2.16) BS01 WO4 ? GO:0015689 ... Q9I2N2 35685933
    150 9beb:A (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    151 9beb:A (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    152 9beb:A (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    153 9beb:B (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    154 9beb:B (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    155 9beb:B (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    156 9beb:C (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    157 9beb:C (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    158 9beb:C (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    159 9beb:D (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    160 9beb:D (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    161 9beb:D (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    162 9beb:E (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    163 9beb:E (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    164 9beb:E (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    165 9beb:F (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    166 9beb:F (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    167 9beb:F (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    168 9bel:A (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    169 9bel:A (2.68) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    170 9bel:B (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    171 9bel:C (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    172 9bel:D (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    173 9bel:D (2.68) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    174 9bel:E (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    175 9bel:E (2.68) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    176 9bel:F (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    177 9bel:F (2.68) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    178 9bem:A (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    179 9bem:A (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    180 9bem:B (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    181 9bem:B (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    182 9bem:B (2.26) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    183 9bem:C (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    184 9bem:C (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    185 9bem:C (2.26) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    186 9bem:D (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    187 9bem:D (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    188 9bem:E (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    189 9bem:E (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    190 9bem:E (2.26) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    191 9bem:F (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    192 9bem:F (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    193 9beo:A (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    194 9beo:A (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    195 9beo:A (1.78) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    196 9beo:B (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    197 9beo:B (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    198 9beo:B (1.78) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    199 9beo:C (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    200 9beo:C (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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