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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7kb1:A (1.85) BS01 WBJ 2.5.1.- GO:0003961 ... Q9WZY4 34019879
    2 7kb1:A (1.85) BS02 WBJ 2.5.1.- GO:0003961 ... Q9WZY4 34019879
    3 7kb1:B (1.85) BS01 WBJ 2.5.1.- GO:0003961 ... Q9WZY4 34019879
    4 7kb1:B (1.85) BS02 WBJ 2.5.1.- GO:0003961 ... Q9WZY4 34019879
    5 7kb1:C (1.85) BS01 WBJ 2.5.1.- GO:0003961 ... Q9WZY4 34019879
    6 7kb1:D (1.85) BS01 WBJ 2.5.1.- GO:0003961 ... Q9WZY4 34019879
    7 8erb:A (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    8 8erb:A (1.98) BS02 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    9 8erb:B (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    10 8erb:B (1.98) BS02 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    11 8erb:C (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    12 8erb:C (1.98) BS02 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    13 8erb:D (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    14 8erb:D (1.98) BS02 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    15 8erb:E (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    16 8erb:E (1.98) BS02 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    17 8erb:F (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    18 8erb:F (1.98) BS02 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    19 8erb:G (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    20 8erb:H (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    21 8erb:H (1.98) BS02 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    22 8erb:I (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    23 8erb:I (1.98) BS02 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    24 8erb:J (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    25 8erb:J (1.98) BS02 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    26 8erb:K (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    27 8erb:K (1.98) BS02 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    28 8erb:L (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    29 8erb:M (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    30 8erb:M (1.98) BS02 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    31 8erb:N (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    32 8erb:P (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    33 8erb:P (1.98) BS02 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    34 8erb:Q (1.98) BS01 WBJ 2.5.1.- GO:0006520 ... S0DUX5 38308582
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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