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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2rar:A (1.52) BS02 VN4 ? GO:0000287 ... Q8A090 18398008 MOAD: Ki=700uM
    2 2rbk:A (1.0) BS02 VN4 ? GO:0000287 ... Q8A090 18398008 MOAD: Ki=510nM
    3 3e81:A (1.629) BS02 VN4 3.1.3.103 GO:0016787 ... Q8A712 18986982
    4 3e81:B (1.629) BS03 VN4 3.1.3.103 GO:0016787 ... Q8A712 18986982
    5 3e81:C (1.629) BS03 VN4 3.1.3.103 GO:0016787 ... Q8A712 18986982
    6 3e81:D (1.629) BS04 VN4 3.1.3.103 GO:0016787 ... Q8A712 18986982
    7 3zx5:A (1.81) BS02 VN4 3.1.3.70 GO:0000287 ... Q72K29 21961705
    8 3zx5:B (1.81) BS02 VN4 3.1.3.70 GO:0000287 ... Q72K29 21961705
    9 4dz6:A (2.2) BS02 VN4 2.7.4.6 GO:0004550 ... O51419 29870023
    10 4dz6:C (2.2) BS02 VN4 2.7.4.6 GO:0004550 ... O51419 29870023
    11 4dz6:D (2.2) BS02 VN4 2.7.4.6 GO:0004550 ... O51419 29870023
    12 4erc:A (1.15) BS01 VN4 3.1.3.16
    3.1.3.48    		 GO:0004721 ... Q9BVJ7 23145819
    13 4erc:B (1.15) BS01 VN4 3.1.3.16
    3.1.3.48    		 GO:0004721 ... Q9BVJ7 23145819
    14 4hgo:A (2.1) BS02 VN4 3.1.3.103 GO:0016787 ... Q8A712 23848398
    15 4hgo:B (2.1) BS03 VN4 3.1.3.103 GO:0016787 ... Q8A712 23848398
    16 4hgo:C (2.1) BS02 VN4 3.1.3.103 GO:0016787 ... Q8A712 23848398
    17 4hgo:D (2.1) BS02 VN4 3.1.3.103 GO:0016787 ... Q8A712 23848398
    18 4hgp:A (1.8) BS02 VN4 3.1.3.45 GO:0009103 ... P45314 23848398
    19 4ri5:A (1.26) BS01 VN4 3.1.3.48 GO:0004725 ... P26045 25728925
    20 4ri5:B (1.26) BS01 VN4 3.1.3.48 GO:0004725 ... P26045 25728925
    21 5a3q:A (3.05) BS01 VN4 7.2.2.10 GO:0000166 ... P04191 27050689
    22 5a3s:A (3.3) BS01 VN4 7.2.2.10 GO:0000166 ... P04191 27050689
    23 5a3s:B (3.3) BS01 VN4 7.2.2.10 GO:0000166 ... P04191 27050689
    24 5dmp:A (1.793) BS01 VN4 ? N/A D1Z0H7 26405198
    25 6yso:A (3.13) BS02 VN4 7.2.2.10 GO:0000166 ... P04191 33209320
    26 6yso:B (3.13) BS02 VN4 7.2.2.10 GO:0000166 ... P04191 33209320
    27 8oxa:A (2.76) BS01 VN4 7.6.2.1 GO:0000166 ... O43520 37980352
    28 8oxb:A (2.99) BS01 VN4 7.6.2.1 GO:0000166 ... O43520 37980352
    29 8oxc:A (2.58) BS01 VN4 7.6.2.1 GO:0000166 ... O43520 37980352
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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