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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e6u:A (1.45) BS02 UVW 1.1.1.271 GO:0005737 ... P32055 11021971
    2 1e7q:A (1.6) BS02 UVW 1.1.1.271 GO:0005737 ... P32055 11021971
    3 1e7r:A (1.6) BS02 UVW 1.1.1.271 GO:0005737 ... P32055 11021971
    4 1e7s:A (1.5) BS02 UVW 1.1.1.271 GO:0005737 ... P32055 11021971
    5 1xco:A (2.85) BS01 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    6 1xco:A (2.85) BS02 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    7 1xco:A (2.85) BS03 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    8 1xco:A (2.85) BS04 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    9 1xco:B (2.85) BS01 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    10 1xco:B (2.85) BS02 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    11 1xco:B (2.85) BS03 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    12 1xco:B (2.85) BS04 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    13 1xco:B (2.85) BS05 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    14 1xco:C (2.85) BS01 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    15 1xco:C (2.85) BS02 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    16 1xco:C (2.85) BS03 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    17 1xco:C (2.85) BS04 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    18 1xco:D (2.85) BS01 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    19 1xco:D (2.85) BS02 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    20 1xco:D (2.85) BS03 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    21 1xco:D (2.85) BS04 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    22 1xco:E (2.85) BS01 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    23 1xco:E (2.85) BS02 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    24 1xco:E (2.85) BS03 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    25 1xco:F (2.85) BS01 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    26 1xco:F (2.85) BS02 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    27 1xco:F (2.85) BS03 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    28 4mva:A (1.43) BS01 UVW N/A GO:0004807 ... N/A 24756028
    29 4mva:B (1.43) BS01 UVW N/A GO:0004807 ... N/A 24756028
    30 5ibz:A (1.611) BS01 UVW ? GO:0004061 ... A0A0G3FEK2 N/A
    31 5ibz:B (1.611) BS01 UVW ? GO:0004061 ... A0A0G3FEK2 N/A
    32 5ibz:C (1.611) BS01 UVW ? GO:0004061 ... A0A0G3FEK2 N/A
    33 5ibz:D (1.611) BS01 UVW ? GO:0004061 ... A0A0G3FEK2 N/A
    34 6h91:A (2.38) BS02 UVW 5.4.2.6 GO:0000287 ... P71447 N/A
    35 6h91:B (2.38) BS02 UVW 5.4.2.6 GO:0000287 ... P71447 N/A
    36 6h92:B (2.6) BS01 UVW 5.4.2.6 GO:0000287 ... P71447 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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