Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1l5s:A (2.1) BS04 URC 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: Kd=550uM
    PDBbind: -logKd/Ki=3.26, Kd=550uM
    2 1l5s:B (2.1) BS05 URC 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: Kd=550uM
    PDBbind: -logKd/Ki=3.26, Kd=550uM
    3 2e3t:A (2.28) BS07 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 17301076
    4 2e3t:B (2.28) BS07 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 17301076
    5 2yzb:A (1.9) BS01 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    6 2yzb:A (1.9) BS02 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    7 2yzb:B (1.9) BS01 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    8 2yzb:B (1.9) BS02 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    9 2yzb:C (1.9) BS01 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    10 2yzb:C (1.9) BS02 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    11 2yzb:D (1.9) BS01 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    12 2yzb:D (1.9) BS02 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    13 2yzb:E (1.9) BS01 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    14 2yzb:E (1.9) BS02 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    15 2yzb:F (1.9) BS01 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    16 2yzb:F (1.9) BS02 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    17 2yzb:G (1.9) BS01 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    18 2yzb:G (1.9) BS02 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    19 2yzb:H (1.9) BS01 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    20 2yzb:H (1.9) BS02 URC 1.7.3.3 GO:0004846 ... D0VWQ1 N/A
    21 3amz:A (2.1) BS07 URC 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 21077683
    22 3amz:B (2.1) BS07 URC 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 21077683
    23 3an1:A (1.73) BS06 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 21077683
    24 3an1:B (1.73) BS05 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 21077683
    25 3bjp:A (1.8) BS01 URC 1.7.3.3 GO:0004846 ... Q00511 18638417
    26 3l9g:A (1.75) BS01 URC 1.7.3.3 GO:0004846 ... Q00511 20516624
    27 3obp:A (1.5) BS01 URC 1.7.3.3 GO:0004846 ... Q00511 21491497
    28 3rp7:A (2.042) BS01 URC 1.14.13.113 GO:0004497 ... A6T923 23259842
    29 4d12:A (1.4) BS01 URC 1.7.3.3 GO:0004846 ... Q00511 25314114
    30 4d17:A (1.3) BS03 URC 1.7.3.3 GO:0004846 ... Q00511 25314114
    31 4d19:A (1.35) BS03 URC 1.7.3.3 GO:0004846 ... Q00511 25314114
    32 4pr8:A (1.16) BS01 URC 1.7.3.3 GO:0004846 ... Q00511 25005084
    33 4yrw:A (1.99) BS06 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    34 4yrw:B (1.99) BS06 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    35 4ysw:A (1.99) BS07 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    36 4ysw:B (1.99) BS07 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    37 4yty:A (2.2) BS05 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    38 4ytz:A (2.3) BS04 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    39 4ytz:B (2.3) BS04 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 25817260
    40 6a7x:A (2.15) BS02 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    41 6a7x:B (2.15) BS04 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    42 6abu:A (1.77) BS02 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    43 6abu:B (1.77) BS04 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    44 6ac1:A (1.77) BS01 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    45 6ac1:B (1.77) BS03 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    46 6ad4:A (1.8) BS01 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    47 6ad4:B (1.8) BS03 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    48 6aju:A (1.94) BS03 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    49 6aju:F (1.94) BS03 URC 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    50 7f2w:A (2.16) BS01 URC 1.7.3.3 GO:0004846 ... D6Y599 34403675
    51 7f2w:A (2.16) BS02 URC 1.7.3.3 GO:0004846 ... D6Y599 34403675
    52 7f2w:B (2.16) BS01 URC 1.7.3.3 GO:0004846 ... D6Y599 34403675
    53 7f2w:B (2.16) BS02 URC 1.7.3.3 GO:0004846 ... D6Y599 34403675
    54 8bmv:A (1.95) BS01 URC N/A N/A Q88R14 38997289
    55 8bmv:B (1.95) BS01 URC N/A N/A Q88R14 38997289
    56 8i68:A (1.88) BS01 URC 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    57 8y65:A (3.51) BS01 URC N/A GO:0005351 ... Q9NRM0 38866775
    58 9b1j:A (3.0) BS01 URC N/A N/A Q96S37 39245778
    59 9b1k:A (3.3) BS01 URC N/A N/A Q96S37 39245778
    60 9b1l:A (3.1) BS01 URC N/A N/A Q96S37 39245778
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417