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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 178 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bd4:A (2.2) BS02 URA 2.4.2.9 GO:0004845 ... Q26998 9628859
    2 1bd4:B (2.2) BS03 URA 2.4.2.9 GO:0004845 ... Q26998 9628859
    3 1bd4:C (2.2) BS03 URA 2.4.2.9 GO:0004845 ... Q26998 9628859
    4 1bd4:D (2.2) BS03 URA 2.4.2.9 GO:0004845 ... Q26998 9628859
    5 1brw:B (2.1) BS03 URA 2.4.2.2 GO:0004645 ... P77836 9817849
    6 1emj:A (2.0) BS03 URA 3.2.2.27 GO:0004844 ... P13051 10805771
    7 1flz:A (2.3) BS01 URA 3.2.2.27 GO:0004844 ... P12295 11027138
    8 1gth:D (2.25) BS08 URA 1.3.1.2 GO:0000166 ... Q28943 11796730
    9 1jls:A (2.5) BS03 URA 2.4.2.9 GO:0004845 ... Q26998 11773618
    10 1jls:B (2.5) BS02 URA 2.4.2.9 GO:0004845 ... Q26998 11773618
    11 1jls:C (2.5) BS01 URA 2.4.2.9 GO:0004845 ... Q26998 11773618
    12 1jls:D (2.5) BS03 URA 2.4.2.9 GO:0004845 ... Q26998 11773618
    13 1ksk:A (2.0) BS01 URA 5.4.99.19 GO:0000455 ... P0AA43 11953756
    14 1ksl:A (2.1) BS01 URA 5.4.99.19 GO:0000455 ... P0AA43 11953756
    15 1oe5:A (2.3) BS03 URA 3.2.2.- GO:0006284 ... Q9YGN6 12820976
    16 1q3f:A (1.9) BS02 URA 3.2.2.27 GO:0004844 ... P13051 14580190
    17 1ssp:E (1.9) BS02 URA 3.2.2.27 GO:0004844 ... P13051 9724657
    18 1tgy:A (2.2) BS02 URA 2.4.2.3 GO:0003824 ... P12758 N/A
    19 1tgy:B (2.2) BS03 URA 2.4.2.3 GO:0003824 ... P12758 N/A
    20 1ucd:A (1.3) BS02 URA 4.6.1.19 GO:0003723 ... P23540 N/A
    21 1udh:A (1.75) BS01 URA 3.2.2.27 GO:0004844 ... P10186 7845459
    22 1ui0:A (1.5) BS02 URA 3.2.2.27 GO:0004844 ... Q5SKC5 14556741 MOAD: Ki=88nM
    PDBbind: -logKd/Ki=7.06, Ki=88nM
    23 1ui0:A (1.5) BS03 URA 3.2.2.27 GO:0004844 ... Q5SKC5 14556741 MOAD: Ki=88nM
    PDBbind: -logKd/Ki=7.06, Ki=88nM
    24 1ws3:A (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    25 1ws3:A (3.2) BS02 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    26 1ws3:B (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    27 1ws3:C (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    28 1ws3:D (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    29 1y1s:A (2.55) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    30 1y1s:B (2.55) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    31 1y1s:D (2.55) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    32 1y1s:E (2.55) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    33 1y1s:F (2.55) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    34 2eug:A (1.5) BS01 URA 3.2.2.27 GO:0004844 ... P12295 10090282
    35 2rj3:A (2.51) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    36 2rj3:B (2.51) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    37 2rj3:D (2.51) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    38 2rj3:E (2.51) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    39 2rj3:F (2.51) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    40 2xrf:A (2.3) BS02 URA 2.4.2.3 GO:0003824 ... O95045 N/A
    41 2xrf:B (2.3) BS02 URA 2.4.2.3 GO:0003824 ... O95045 N/A
    42 2xrf:C (2.3) BS02 URA 2.4.2.3 GO:0003824 ... O95045 N/A
    43 3bje:A (1.44) BS02 URA 2.4.2.- GO:0003824 ... Q57VZ2 20070944
    44 3bje:B (1.44) BS03 URA 2.4.2.- GO:0003824 ... Q57VZ2 20070944
    45 3cxm:A (1.5) BS02 URA 3.2.2.27 GO:0004844 ... D0VWU0 N/A
    46 3kvy:A (2.3) BS02 URA 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    47 3kvy:B (2.3) BS02 URA 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    48 3loc:A (2.5) BS01 URA ? GO:0000976 ... P0ACU2 N/A
    49 3loc:B (2.5) BS01 URA ? GO:0000976 ... P0ACU2 N/A
    50 3loc:C (2.5) BS01 URA ? GO:0000976 ... P0ACU2 N/A
    51 3loc:D (2.5) BS01 URA ? GO:0000976 ... P0ACU2 N/A
    52 3pns:B (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    53 3pns:C (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    54 3pns:D (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    55 3pns:E (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    56 3pns:F (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    57 3pns:G (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    58 3pns:H (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    59 3pns:I (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    60 3pns:J (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    61 3pns:K (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    62 3pns:L (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    63 3qe7:A (2.781) BS01 URA ? GO:0005886 ... P0AGM7 21423164
    64 3qpb:A (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    65 3qpb:B (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    66 3qpb:C (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    67 3qpb:D (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    68 3qpb:E (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    69 3qpb:F (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    70 3qpb:G (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    71 3qpb:H (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    72 3qpb:I (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    73 3qpb:J (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    74 3qpb:K (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    75 3qpb:L (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    76 3qpb:M (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    77 3qpb:N (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    78 3qpb:O (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    79 3qpb:P (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    80 3qpb:Q (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    81 3qpb:R (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    82 3slf:A (2.05) BS02 URA 2.3.1.81 GO:0008080 ... A0A3P1UCA6 N/A
    83 3slf:B (2.05) BS02 URA 2.3.1.81 GO:0008080 ... A0A3P1UCA6 N/A
    84 4hk7:A (2.189) BS03 URA 4.1.1.66 GO:0005737 ... G3J531 23917530
    85 4hk7:B (2.189) BS02 URA 4.1.1.66 GO:0005737 ... G3J531 23917530
    86 4hk7:C (2.189) BS02 URA 4.1.1.66 GO:0005737 ... G3J531 23917530
    87 4hk7:D (2.189) BS03 URA 4.1.1.66 GO:0005737 ... G3J531 23917530
    88 4jyk:A (1.7) BS01 URA ? GO:0000976 ... P0ACU2 N/A
    89 4jyk:B (1.7) BS01 URA ? GO:0000976 ... P0ACU2 N/A
    90 4kpv:A (2.57) BS01 URA 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    91 4lzb:A (2.03) BS01 URA 3.2.2.27 GO:0003677 ... Q91UM2 24316823
    92 4lzb:B (2.03) BS01 URA 3.2.2.27 GO:0003677 ... Q91UM2 24316823
    93 4lzb:C (2.03) BS01 URA 3.2.2.27 GO:0003677 ... Q91UM2 24316823
    94 4lzb:D (2.03) BS01 URA 3.2.2.27 GO:0003677 ... Q91UM2 24316823
    95 4lzb:E (2.03) BS01 URA 3.2.2.27 GO:0003677 ... Q91UM2 24316823
    96 4lzb:F (2.03) BS01 URA 3.2.2.27 GO:0003677 ... Q91UM2 24316823
    97 4lzb:G (2.03) BS01 URA 3.2.2.27 GO:0003677 ... Q91UM2 24316823
    98 4lzb:H (2.03) BS01 URA 3.2.2.27 GO:0003677 ... Q91UM2 24316823
    99 4lzb:I (2.03) BS01 URA 3.2.2.27 GO:0003677 ... Q91UM2 24316823
    100 4lzb:J (2.03) BS01 URA 3.2.2.27 GO:0003677 ... Q91UM2 24316823
    101 4lzb:K (2.03) BS01 URA 3.2.2.27 GO:0003677 ... Q91UM2 24316823
    102 4lzb:L (2.03) BS01 URA 3.2.2.27 GO:0003677 ... Q91UM2 24316823
    103 4oeh:A (1.91) BS01 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    104 4oeh:B (1.91) BS01 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    105 4oeh:E (1.91) BS01 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    106 4oeh:F (1.91) BS01 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    107 4skn:E (2.9) BS03 URA 3.2.2.27 GO:0004844 ... P13051 8900285
    108 4txl:A (1.92) BS01 URA 2.4.2.3 GO:0003824 ... G4VGI0 26898674
    109 4txl:B (1.92) BS01 URA 2.4.2.3 GO:0003824 ... G4VGI0 26898674
    110 4txl:C (1.92) BS01 URA 2.4.2.3 GO:0003824 ... G4VGI0 26898674
    111 4txl:D (1.92) BS01 URA 2.4.2.3 GO:0003824 ... G4VGI0 26898674
    112 4wpl:A (1.15) BS01 URA 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    113 4wru:A (1.24) BS01 URA 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    114 4wrv:A (1.44) BS01 URA 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    115 4ygm:A (1.85) BS01 URA 3.2.2.27 GO:0003677 ... P20536 26045555
    116 4ygm:B (1.85) BS01 URA 3.2.2.27 GO:0003677 ... P20536 26045555
    117 4yig:A (2.7) BS03 URA 3.2.2.27 GO:0003677 ... P20536 26045555
    118 4yig:E (2.7) BS03 URA 3.2.2.27 GO:0003677 ... P20536 26045555
    119 4yig:I (2.7) BS03 URA 3.2.2.27 GO:0003677 ... P20536 26045555
    120 4yjk:A (1.68) BS01 URA 2.4.2.3 GO:0003824 ... Q8E9X9 26894668
    121 4yjk:D (1.68) BS01 URA 2.4.2.3 GO:0003824 ... Q8E9X9 26894668
    122 4yjk:F (1.68) BS01 URA 2.4.2.3 GO:0003824 ... Q8E9X9 26894668
    123 4zby:A (1.7) BS02 URA 3.2.2.27 N/A Q96YD0 26318717
    124 5eug:A (1.6) BS01 URA 3.2.2.27 GO:0004844 ... P12295 10090282
    125 5gnw:A (2.869) BS01 URA ? N/A Q89XR0 28369586
    126 5gnw:B (2.869) BS01 URA ? N/A Q89XR0 28369586
    127 5gnw:C (2.869) BS01 URA ? N/A Q89XR0 28369586
    128 5gnw:D (2.869) BS01 URA ? N/A Q89XR0 28369586
    129 5gnw:E (2.869) BS01 URA ? N/A Q89XR0 28369586
    130 5gnw:F (2.869) BS01 URA ? N/A Q89XR0 28369586
    131 5gnw:G (2.869) BS01 URA ? N/A Q89XR0 28369586
    132 5gnw:H (2.869) BS01 URA ? N/A Q89XR0 28369586
    133 5ilx:A (1.7) BS01 URA 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    134 5lhv:A (1.288) BS02 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    135 5lhv:B (1.288) BS02 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    136 5lhv:C (1.288) BS02 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    137 5lhv:D (1.288) BS02 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    138 5lhv:E (1.288) BS02 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    139 5lhv:F (1.288) BS02 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    140 5miw:A (1.28) BS01 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    141 5miw:B (1.28) BS01 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    142 5miw:C (1.28) BS01 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    143 5miw:D (1.28) BS01 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    144 5miw:E (1.28) BS01 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    145 5miw:F (1.28) BS01 URA 2.4.2.3 GO:0003824 ... Q9K4U1 N/A
    146 5wan:A (1.798) BS01 URA 1.14.99.46 GO:0004497 ... P75898 20369853
    147 5xls:A (2.5) BS01 URA ? GO:0005886 ... P0AGM8 28621327
    148 5y48:A (1.7) BS01 URA 3.2.2.22 GO:0000166 ... D9J2T9 30007053 PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    149 6ajo:A (2.269) BS03 URA ? GO:0004844 ... A0QP43 31101917
    150 6ajr:A (1.341) BS02 URA ? GO:0004844 ... A0QP43 31101917 PDBbind: -logKd/Ki=4.31, Kd=48.5uM
    151 6ioa:A (2.15) BS02 URA ? GO:0004844 ... I7F541 31101915
    152 6iob:A (2.002) BS01 URA 2.7.7.7 GO:0004844 ... I7F541 31101915
    153 6ioc:A (1.624) BS02 URA 2.7.7.7 GO:0004844 ... I7F541 31101915
    154 6k5h:A (2.503) BS01 URA 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    155 6k5h:B (2.503) BS01 URA 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    156 6k5h:C (2.503) BS02 URA 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    157 6k5h:D (2.503) BS02 URA 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    158 6sgl:AAA (2.01) BS02 URA 1.14.99.46 GO:0004497 ... P75898 32066967
    159 6teg:AAA (1.8) BS02 URA 1.14.99.46 GO:0004497 ... P75898 32066967
    160 6z1b:A (2.25) BS01 URA ? GO:0000976 ... P0ACU2 N/A
    161 6z1b:B (2.25) BS01 URA ? GO:0000976 ... P0ACU2 N/A
    162 7h93:A (1.44) BS01 URA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    163 7h93:A (1.44) BS02 URA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    164 7h93:C (1.44) BS01 URA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    165 7m32:A (1.82) BS06 URA 1.3.1.2 GO:0000166 ... Q28943 34032117
    166 7m32:B (1.82) BS06 URA 1.3.1.2 GO:0000166 ... Q28943 34032117
    167 7m32:C (1.82) BS06 URA 1.3.1.2 GO:0000166 ... Q28943 34032117
    168 7m32:D (1.82) BS06 URA 1.3.1.2 GO:0000166 ... Q28943 34032117
    169 7q2w:FFF (1.654) BS01 URA 2.4.2.3 GO:0003824 ... Q8E9X9 N/A
    170 8iie:A (1.67) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    171 8iig:A (2.3) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    172 8iii:A (1.72) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    173 8iil:A (2.3) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    174 8iin:A (1.61) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    175 8iip:A (1.63) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    176 8iit:A (1.61) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    177 8oo1:A (3.7) BS01 URA ? GO:0005886 ... P0AGM7 39209842
    178 8oo1:C (3.7) BS02 URA ? GO:0005886 ... P0AGM7 39209842
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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