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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jjr:A (2.8) BS13 UIX N/A GO:0009765 ... A0AA36I308 38493166
    2 8jjr:A (2.8) BS16 UIX N/A GO:0009765 ... A0AA36I308 38493166
    3 8jjr:B (2.8) BS11 UIX N/A GO:0009765 ... A0AA36MZ23 38493166
    4 8jjr:C (2.8) BS13 UIX N/A GO:0009765 ... A0AA36MZ23 38493166
    5 8jjr:C (2.8) BS15 UIX N/A GO:0009765 ... A0AA36MZ23 38493166
    6 8jjr:D (2.8) BS17 UIX N/A GO:0009765 ... A0AA36JNS8 38493166
    7 8jjr:E (2.8) BS19 UIX N/A GO:0009765 ... N/A 38493166
    8 8jjr:G (2.8) BS16 UIX N/A GO:0009765 ... A0AA36I3A4 38493166
    9 8jjr:H (2.8) BS15 UIX N/A GO:0009765 ... A0AA36NGX7 38493166
    10 8jjr:H (2.8) BS18 UIX N/A GO:0009765 ... A0AA36NGX7 38493166
    11 8jjr:I (2.8) BS11 UIX N/A GO:0009765 ... A0AA36HTH0 38493166
    12 8jjr:J (2.8) BS14 UIX N/A GO:0009765 ... A0AA36N2P9 38493166
    13 8jjr:T (2.8) BS14 UIX N/A GO:0009765 ... A0AA36NBE3 38493166
    14 8jjr:j (2.8) BS05 UIX N/A N/A A0AA36N211 38493166
    15 8jw0:A (2.9) BS04 UIX N/A GO:0009765 ... N/A 38319970
    16 8jw0:B (2.9) BS05 UIX N/A GO:0009765 ... N/A 38319970
    17 8jw0:B (2.9) BS19 UIX N/A GO:0009765 ... N/A 38319970
    18 8jw0:C (2.9) BS05 UIX N/A GO:0009765 ... N/A 38319970
    19 8jw0:E (2.9) BS05 UIX N/A GO:0009765 ... N/A 38319970
    20 8jw0:F (2.9) BS06 UIX N/A GO:0009765 ... N/A 38319970
    21 8jw0:J (2.9) BS05 UIX N/A GO:0009765 ... N/A 38319970
    22 8jw0:L (2.9) BS04 UIX N/A GO:0009765 ... N/A 38319970
    23 8jw0:N (2.9) BS06 UIX N/A GO:0009765 ... N/A 38319970
    24 8jw0:O (2.9) BS06 UIX N/A GO:0009765 ... N/A 38319970
    25 8jw0:P (2.9) BS07 UIX ? GO:0009765 ... Q38688 38319970
    26 8jw0:Q (2.9) BS06 UIX N/A GO:0009765 ... N/A 38319970
    27 8jw0:T (2.9) BS06 UIX N/A GO:0009765 ... N/A 38319970
    28 8jw0:l (2.9) BS14 UIX N/A GO:0009522 ... N/A 38319970
    29 8jze:A (2.99) BS04 UIX N/A GO:0009765 ... N/A 38319970
    30 8jze:B (2.99) BS06 UIX N/A GO:0009765 ... N/A 38319970
    31 8jze:G (2.99) BS02 UIX N/A GO:0009765 ... N/A 38319970
    32 8jze:I (2.99) BS04 UIX N/A GO:0009765 ... N/A 38319970
    33 8jze:J (2.99) BS06 UIX N/A GO:0009765 ... N/A 38319970
    34 8jze:K (2.99) BS04 UIX N/A GO:0009765 ... N/A 38319970
    35 8jze:O (2.99) BS06 UIX N/A GO:0009765 ... N/A 38319970
    36 8jze:P (2.99) BS07 UIX N/A GO:0009765 ... N/A 38319970
    37 8jze:h (2.99) BS03 UIX ? N/A A0A812Q823 38319970
    38 8jze:l (2.99) BS14 UIX ? GO:0009522 ... A0A812S6M2 38319970
    39 8jzf:A (2.7) BS04 UIX N/A GO:0009765 ... N/A 38319970
    40 8jzf:B (2.7) BS06 UIX N/A GO:0009765 ... N/A 38319970
    41 8jzf:G (2.7) BS02 UIX N/A GO:0009765 ... N/A 38319970
    42 8jzf:I (2.7) BS04 UIX N/A GO:0009765 ... N/A 38319970
    43 8jzf:J (2.7) BS06 UIX N/A GO:0009765 ... N/A 38319970
    44 8jzf:K (2.7) BS04 UIX N/A GO:0009765 ... N/A 38319970
    45 8jzf:h (2.7) BS03 UIX ? N/A A0A812Q823 38319970
    46 8jzf:l (2.7) BS14 UIX ? GO:0009522 ... A0A812S6M2 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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