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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1tw5:A (2.3) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 15449940
    2 1tw5:B (2.3) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 15449940
    3 2ae7:A (2.0) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    4 2ae7:B (2.0) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    5 2ae7:C (2.0) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    6 2aec:A (2.0) BS03 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    7 2aec:B (2.0) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    8 2aec:C (2.0) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    9 2aes:A (2.0) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    10 2aes:B (2.0) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    11 2aes:C (2.0) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    12 2agd:A (1.9) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    13 2agd:B (1.9) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    14 2agd:C (1.9) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    15 2ah9:A (2.0) BS01 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    16 2ah9:B (2.0) BS01 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    17 2ah9:C (2.0) BS01 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 16157350
    18 3ee5:A (2.2) BS01 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 19106107
    19 3ee5:B (2.2) BS01 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 19106107
    20 3ee5:C (2.2) BS01 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 19106107
    21 4ee3:A (2.3) BS01 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 22740701
    22 4ee3:B (2.3) BS01 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 22740701
    23 4ee3:C (2.3) BS01 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 22740701
    24 4krv:A (2.4) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 23942731
    25 4krv:B (2.4) BS02 UDH 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 23942731
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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