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BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3hl2:A (2.81) BS03 TS6 2.9.1.2 GO:0000049 ... Q9HD40 19608919
    2 3hl2:C (2.81) BS03 TS6 2.9.1.2 GO:0000049 ... Q9HD40 19608919
    3 4yxw:E (3.1) BS01 TS6 7.1.2.2 GO:0005515 ... P00829 25918412
    4 6pc3:A (2.1) BS03 TS6 ? GO:0016462 ... B5ZA44 31679177
    5 6pc3:B (2.1) BS04 TS6 ? GO:0016462 ... B5ZA44 31679177
    6 7bnk:A (1.9) BS01 TS6 ? GO:0003677 ... Q1CVJ4 34562373
    7 7bnk:B (1.9) BS02 TS6 ? GO:0003677 ... Q1CVJ4 34562373
    8 7o0n:A (1.89) BS02 TS6 ? GO:0003677 ... Q1CVJ4 34562373
    9 7o0n:B (1.89) BS02 TS6 ? GO:0003677 ... Q1CVJ4 34562373
    10 8k8y:A (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    11 8k8y:B (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    12 8k8y:C (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    13 8k8y:D (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    14 8k8y:E (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    15 8k8y:F (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    16 8k8y:G (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    17 8k8z:A (2.83) BS01 TS6 N/A N/A C9DRU9 N/A
    18 8k8z:B (2.83) BS01 TS6 N/A N/A C9DRU9 N/A
    19 8k8z:C (2.83) BS01 TS6 N/A N/A C9DRU9 N/A
    20 8k8z:D (2.83) BS01 TS6 N/A N/A C9DRU9 N/A
    21 8k8z:E (2.83) BS01 TS6 N/A N/A C9DRU9 N/A
    22 8k8z:F (2.83) BS01 TS6 N/A N/A C9DRU9 N/A
    23 8k90:B (3.43) BS01 TS6 N/A N/A C9DRU9 N/A
    24 8k90:C (3.43) BS01 TS6 N/A N/A C9DRU9 N/A
    25 8k90:D (3.43) BS01 TS6 N/A N/A C9DRU9 N/A
    26 8k91:A (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    27 8k91:B (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    28 8k91:C (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    29 8k91:D (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    30 8k91:E (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    31 8k91:F (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    32 8k91:G (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    33 8k92:A (3.31) BS01 TS6 N/A N/A C9DRU9 N/A
    34 8k92:B (3.31) BS01 TS6 N/A N/A C9DRU9 N/A
    35 8k92:C (3.31) BS01 TS6 N/A N/A C9DRU9 N/A
    36 8k92:D (3.31) BS01 TS6 N/A N/A C9DRU9 N/A
    37 8k92:E (3.31) BS01 TS6 N/A N/A C9DRU9 N/A
    38 8k92:F (3.31) BS01 TS6 N/A N/A C9DRU9 N/A
    39 8k93:B (3.23) BS01 TS6 N/A N/A C9DRU9 N/A
    40 8k93:C (3.23) BS01 TS6 N/A N/A C9DRU9 N/A
    41 8k93:D (3.23) BS01 TS6 N/A N/A C9DRU9 N/A
    42 8k93:E (3.23) BS01 TS6 N/A N/A C9DRU9 N/A
    43 8k94:B (3.4) BS01 TS6 N/A N/A C9DRU9 N/A
    44 8k94:C (3.4) BS01 TS6 N/A N/A C9DRU9 N/A
    45 8k94:D (3.4) BS01 TS6 N/A N/A C9DRU9 N/A
    46 8k95:A (3.05) BS01 TS6 N/A N/A C9DRU9 N/A
    47 8k95:B (3.05) BS01 TS6 N/A N/A C9DRU9 N/A
    48 8k95:C (3.05) BS01 TS6 N/A N/A C9DRU9 N/A
    49 8k95:D (3.05) BS01 TS6 N/A N/A C9DRU9 N/A
    50 8k95:E (3.05) BS01 TS6 N/A N/A C9DRU9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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