Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3fo5:A (2.0) BS01 TCE 3.1.2.-
    3.1.2.2    		 GO:0008289 ... Q8WXI4 21738568
    2 3iwl:A (1.6) BS02 TCE ? GO:0005507 ... O00244 19807176
    3 3t92:A (1.5) BS04 TCE 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472
    Q15744    		 25004968
    4 4em9:B (2.1) BS02 TCE ? GO:0003677 ... P37231 22649490
    5 4lus:B (2.1) BS01 TCE 5.1.1.1 GO:0003824 ... Q180W0 25004969
    6 4u9r:A (2.17) BS03 TCE ? GO:0046872 ... Q1LAJ7 26192600
    7 4ydx:A (1.602) BS02 TCE ? GO:0005507 ... O00244 26327386
    8 5i0a:A (1.5) BS02 TCE 3.1.-.- GO:0016539 ... P9WHJ3 N/A
    9 5k08:A (1.401) BS02 TCE 3.1.-.- GO:0016539 ... P9WHJ3 N/A
    10 5mwe:B (2.02) BS04 TCE ? N/A P54623 28575671
    11 5n69:B (2.45) BS04 TCE ? GO:0003774 ... Q9BE39 28775348
    12 5t04:A (3.3) BS02 TCE 3.2.1.17 GO:0003796 ... P00720
    P20789    		 27924846
    13 5va8:A (1.6) BS02 TCE ? GO:0000166 ... B2JE32 N/A
    14 5va8:B (1.6) BS02 TCE ? GO:0000166 ... B2JE32 N/A
    15 5va8:C (1.6) BS02 TCE ? GO:0000166 ... B2JE32 N/A
    16 5va8:D (1.6) BS02 TCE ? GO:0000166 ... B2JE32 N/A
    17 5w2o:A (1.8) BS01 TCE 2.3.1.293 GO:0004315 ... P9WQD9 30563908
    18 5w2p:A (2.0) BS03 TCE 2.3.1.293 GO:0004315 ... P9WQD9 30563908
    19 5w2q:A (1.8) BS03 TCE 2.3.1.293 GO:0004315 ... P9WQD9 30563908
    20 6aq7:H (1.83) BS01 TCE N/A N/A N/A 29569342
    21 6dwd:A (1.7) BS09 TCE 3.1.5.- N/A Q9Y3Z3 30305425
    22 6gzd:A (2.28) BS01 TCE 2.7.11.1 GO:0000775 ... P48729 30146162
    23 6wmv:A (2.142) BS02 TCE ?
    2.7.8.-    		 GO:0008654 ... O27985
    U5WZP7    		 32389689
    24 6wpi:A (3.02) BS02 TCE ? GO:0003723 ... P47077 32371454
    25 6ws4:B (1.84) BS02 TCE 3.6.5.2 GO:0003924 ... P01116 37556505
    26 8aji:A (1.94) BS01 TCE 3.4.16.4 GO:0004180 ... A0A0P7JVD2 37042660
    27 8aji:B (1.94) BS01 TCE 3.4.16.4 GO:0004180 ... A0A0P7JVD2 37042660
    28 8aji:C (1.94) BS01 TCE 3.4.16.4 GO:0004180 ... A0A0P7JVD2 37042660
    29 8aji:D (1.94) BS01 TCE 3.4.16.4 GO:0004180 ... A0A0P7JVD2 37042660
    30 8gix:E (3.9) BS01 TCE N/A GO:0000417 ... G0S723 38925115
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417