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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 184 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aop:A (1.6) BS03 SRM 1.8.1.2 GO:0004783 ... P17846 7569952
    2 1zj8:A (2.8) BS02 SRM 1.8.7.1 GO:0000103 ... P9WJ03 15917234
    3 1zj8:B (2.8) BS02 SRM 1.8.7.1 GO:0000103 ... P9WJ03 15917234
    4 1zj9:A (2.9) BS02 SRM 1.8.7.1 GO:0000103 ... P9WJ03 15917234
    5 1zj9:B (2.9) BS02 SRM 1.8.7.1 GO:0000103 ... P9WJ03 15917234
    6 2akj:A (2.8) BS02 SRM 1.7.7.1 GO:0009507 ... P05314 16331965
    7 2aop:A (1.75) BS03 SRM 1.8.1.2 GO:0004783 ... P17846 9315848
    8 2gep:A (1.9) BS03 SRM 1.8.1.2 GO:0004783 ... P17846 9315849
    9 2v4j:A (2.1) BS04 SRM 1.8.99.3 GO:0000103 ... P45574 18829451
    10 2v4j:B (2.1) BS04 SRM 1.8.1.22 GO:0000103 ... P45575 18829451
    11 2v4j:D (2.1) BS04 SRM 1.8.99.3 GO:0000103 ... P45574 18829451
    12 2v4j:E (2.1) BS04 SRM 1.8.1.22 GO:0000103 ... P45575 18829451
    13 2xsj:A (2.5) BS03 SRM 1.8.99.3 GO:0000103 ... Q93UT1 21833321
    14 2xsj:A (2.5) BS04 SRM 1.8.99.3 GO:0000103 ... Q93UT1 21833321
    15 2xsj:B (2.5) BS01 SRM 1.8.99.3 GO:0006790 ... Q93UT0 21833321
    16 2xsj:B (2.5) BS04 SRM 1.8.99.3 GO:0006790 ... Q93UT0 21833321
    17 2xsj:C (2.5) BS01 SRM 1.8.99.3 GO:0002143 ... C7LV29 21833321
    18 2xsj:D (2.5) BS03 SRM 1.8.99.3 GO:0000103 ... Q93UT1 21833321
    19 2xsj:D (2.5) BS04 SRM 1.8.99.3 GO:0000103 ... Q93UT1 21833321
    20 2xsj:E (2.5) BS01 SRM 1.8.99.3 GO:0006790 ... Q93UT0 21833321
    21 2xsj:E (2.5) BS04 SRM 1.8.99.3 GO:0006790 ... Q93UT0 21833321
    22 2xsj:F (2.5) BS01 SRM 1.8.99.3 GO:0002143 ... C7LV29 21833321
    23 3aop:A (2.1) BS03 SRM 1.8.1.2 GO:0004783 ... P17846 9315848
    24 3b0g:A (1.25) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22238192
    25 3b0h:A (2.306) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KA9 22238192
    26 3b0h:B (2.306) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KA9 22238192
    27 3b0j:A (1.7) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22238192
    28 3b0l:A (1.7) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22238192
    29 3b0m:A (1.9) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22238192
    30 3b0n:A (2.0) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22238192
    31 3geo:A (2.1) BS03 SRM 1.8.1.2 GO:0004783 ... P17846 9315849
    32 3mm5:A (1.8) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    33 3mm5:A (1.8) BS05 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    34 3mm5:B (1.8) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    35 3mm5:B (1.8) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    36 3mm5:D (1.8) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    37 3mm5:D (1.8) BS05 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    38 3mm5:E (1.8) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    39 3mm5:E (1.8) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    40 3mm6:A (1.9) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    41 3mm6:A (1.9) BS05 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    42 3mm6:B (1.9) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    43 3mm6:B (1.9) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    44 3mm6:D (1.9) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    45 3mm6:D (1.9) BS05 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    46 3mm6:E (1.9) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    47 3mm6:E (1.9) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    48 3mm7:A (1.9) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    49 3mm7:A (1.9) BS04 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    50 3mm7:B (1.9) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    51 3mm7:B (1.9) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    52 3mm7:D (1.9) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    53 3mm7:D (1.9) BS04 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    54 3mm7:E (1.9) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    55 3mm7:E (1.9) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    56 3mm8:A (2.28) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    57 3mm8:A (2.28) BS05 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    58 3mm8:B (2.28) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    59 3mm8:B (2.28) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    60 3mm8:D (2.28) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    61 3mm8:D (2.28) BS04 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    62 3mm8:E (2.28) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    63 3mm8:E (2.28) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    64 3mm9:A (2.1) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    65 3mm9:A (2.1) BS05 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    66 3mm9:B (2.1) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    67 3mm9:B (2.1) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    68 3mm9:D (2.1) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    69 3mm9:D (2.1) BS04 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    70 3mm9:E (2.1) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    71 3mm9:E (2.1) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    72 3mma:A (2.3) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    73 3mma:A (2.3) BS05 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    74 3mma:B (2.3) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    75 3mma:B (2.3) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    76 3mma:D (2.3) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    77 3mma:D (2.3) BS04 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    78 3mma:E (2.3) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    79 3mma:E (2.3) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    80 3mmb:A (2.3) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    81 3mmb:A (2.3) BS04 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    82 3mmb:B (2.3) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    83 3mmb:B (2.3) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    84 3mmb:D (2.3) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    85 3mmb:D (2.3) BS04 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    86 3mmb:E (2.3) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    87 3mmb:E (2.3) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    88 3mmc:A (2.04) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 18495156
    89 3mmc:A (2.04) BS04 SRM 1.8.1.22 GO:0000103 ... Q59109 18495156
    90 3mmc:B (2.04) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 18495156
    91 3mmc:B (2.04) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 18495156
    92 3mmc:D (2.04) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 18495156
    93 3mmc:D (2.04) BS04 SRM 1.8.1.22 GO:0000103 ... Q59109 18495156
    94 3mmc:E (2.04) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 18495156
    95 3mmc:E (2.04) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 18495156
    96 3or1:A (1.76) BS02 SRM ? GO:0000103 ... E2QR97 N/A
    97 3or1:A (1.76) BS05 SRM ? GO:0000103 ... E2QR97 N/A
    98 3or1:B (1.76) BS01 SRM ? GO:0000103 ... E2QR96 N/A
    99 3or1:B (1.76) BS02 SRM ? GO:0000103 ... E2QR96 N/A
    100 3or1:D (1.76) BS02 SRM ? GO:0000103 ... E2QR97 N/A
    101 3or1:D (1.76) BS05 SRM ? GO:0000103 ... E2QR97 N/A
    102 3or1:E (1.76) BS01 SRM ? GO:0000103 ... E2QR96 N/A
    103 3or1:E (1.76) BS02 SRM ? GO:0000103 ... E2QR96 N/A
    104 3or2:A (2.05) BS04 SRM ? GO:0000103 ... E2QR97 N/A
    105 3or2:A (2.05) BS06 SRM ? GO:0000103 ... E2QR97 N/A
    106 3or2:B (2.05) BS01 SRM ? GO:0000103 ... E2QR96 N/A
    107 3or2:B (2.05) BS02 SRM ? GO:0000103 ... E2QR96 N/A
    108 3or2:C (2.05) BS01 SRM ? GO:0002143 ... E2QR99 N/A
    109 3or2:D (2.05) BS04 SRM ? GO:0000103 ... E2QR97 N/A
    110 3or2:D (2.05) BS06 SRM ? GO:0000103 ... E2QR97 N/A
    111 3or2:E (2.05) BS01 SRM ? GO:0000103 ... E2QR96 N/A
    112 3or2:E (2.05) BS02 SRM ? GO:0000103 ... E2QR96 N/A
    113 3vkp:A (1.4) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    114 3vkq:A (1.6) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    115 3vkr:A (1.6) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    116 3vks:A (1.4) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    117 3vkt:A (1.3) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    118 3vlx:A (1.35) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    119 3vly:A (1.55) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    120 3vlz:A (2.07) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    121 3vm0:A (1.695) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    122 3vm1:A (1.5) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    123 4aop:A (1.8) BS03 SRM 1.8.1.2 GO:0004783 ... P17846 9315848
    124 4g38:A (1.56) BS02 SRM 1.8.1.2 GO:0000103 ... P17846 23153334
    125 4g39:A (2.4) BS02 SRM 1.8.1.2 GO:0000103 ... P17846 23153334
    126 4gep:A (2.0) BS02 SRM 1.8.1.2 GO:0004783 ... P17846 9315849
    127 4htr:A (1.6) BS03 SRM 1.8.1.2 GO:0004783 ... P17846 23153334
    128 5aop:A (2.2) BS02 SRM 1.8.1.2 GO:0004783 ... P17846 9315848
    129 5gep:A (2.1) BS02 SRM 1.8.1.2 GO:0004783 ... P17846 9315849
    130 5h8v:A (2.2) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    131 5h8v:B (2.2) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    132 5h8y:A (2.2) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    133 5h8y:B (2.2) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    134 5h8y:C (2.2) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    135 5h8y:D (2.2) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    136 5h92:A (2.08) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    137 5h92:B (2.08) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    138 6c3m:A (1.5) BS02 SRM 1.8.1.2 GO:0000103 ... P17846 29852252
    139 6c3x:A (1.542) BS02 SRM 1.8.1.2 GO:0000103 ... P17846 29852252
    140 6c3y:A (1.542) BS02 SRM 1.8.1.2 GO:0000103 ... P17846 29852252
    141 6c3z:A (1.681) BS02 SRM 1.8.1.2 GO:0000103 ... P17846 29852252
    142 6gep:A (1.8) BS02 SRM 1.8.1.2 GO:0004783 ... P17846 9315849
    143 7gep:A (2.4) BS02 SRM 1.8.1.2 GO:0004783 ... P17846 9315849
    144 7np8:A (2.3) BS09 SRM 1.8.98.3 GO:0016491 ... Q58280 36658338
    145 7np8:A (2.3) BS11 SRM 1.8.98.3 GO:0016491 ... Q58280 36658338
    146 7np8:B (2.3) BS01 SRM 1.8.98.3 GO:0016491 ... Q58280 36658338
    147 7np8:B (2.3) BS09 SRM 1.8.98.3 GO:0016491 ... Q58280 36658338
    148 7np8:C (2.3) BS08 SRM 1.8.98.3 GO:0016491 ... Q58280 36658338
    149 7np8:C (2.3) BS11 SRM 1.8.98.3 GO:0016491 ... Q58280 36658338
    150 7np8:D (2.3) BS01 SRM 1.8.98.3 GO:0016491 ... Q58280 36658338
    151 7np8:D (2.3) BS10 SRM 1.8.98.3 GO:0016491 ... Q58280 36658338
    152 7npa:A (1.55) BS08 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    153 7npa:A (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    154 7npa:B (1.55) BS01 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    155 7npa:B (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    156 7npa:C (1.55) BS08 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    157 7npa:C (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    158 7npa:D (1.55) BS01 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    159 7npa:D (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    160 7npa:E (1.55) BS08 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    161 7npa:E (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    162 7npa:F (1.55) BS01 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    163 7npa:F (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    164 7npa:G (1.55) BS08 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    165 7npa:G (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    166 7npa:H (1.55) BS01 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    167 7npa:H (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    168 7npa:I (1.55) BS08 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    169 7npa:I (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    170 7npa:J (1.55) BS01 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    171 7npa:J (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    172 7npa:K (1.55) BS08 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    173 7npa:K (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    174 7npa:L (1.55) BS01 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    175 7npa:L (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    176 7npa:M (1.55) BS08 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    177 7npa:M (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    178 7npa:N (1.55) BS01 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    179 7npa:N (1.55) BS11 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    180 7npa:O (1.55) BS08 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    181 7npa:O (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    182 7npa:P (1.55) BS01 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    183 7npa:P (1.55) BS09 SRM 1.8.98.3 GO:0000166 ... A0A2Z5PF12 36658338
    184 8gep:A (2.2) BS03 SRM 1.8.1.2 GO:0004783 ... P17846 9315849
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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