Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1009 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 5 6 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 7vy2:a (2.75) BS02 SPO N/A GO:0016020 ... N/A 35393413
    802 7vy2:a (2.75) BS06 SPO N/A GO:0016020 ... N/A 35393413
    803 7vy2:b (2.75) BS02 SPO N/A GO:0016020 ... N/A 35393413
    804 7vy2:d (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    805 7vy2:d (2.75) BS05 SPO N/A GO:0016020 ... N/A 35393413
    806 7vy2:d (2.75) BS07 SPO N/A GO:0016020 ... N/A 35393413
    807 7vy2:e (2.75) BS02 SPO N/A GO:0016020 ... N/A 35393413
    808 7vy2:e (2.75) BS04 SPO N/A GO:0016020 ... N/A 35393413
    809 7vy2:f (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    810 7vy2:f (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    811 7vy2:f (2.75) BS04 SPO N/A GO:0016020 ... N/A 35393413
    812 7vy2:g (2.75) BS02 SPO N/A GO:0016020 ... N/A 35393413
    813 7vy2:g (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    814 7vy2:i (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    815 7vy2:i (2.75) BS05 SPO N/A GO:0016020 ... N/A 35393413
    816 7vy2:j (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    817 7vy2:j (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    818 7vy2:k (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    819 7vy2:k (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    820 7vy2:k (2.75) BS05 SPO N/A GO:0016020 ... N/A 35393413
    821 7vy2:m (2.75) BS09 SPO N/A GO:0009772 ... N/A 35393413
    822 7vy2:n (2.75) BS02 SPO N/A GO:0016020 ... N/A 35393413
    823 7vy2:n (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    824 7vy2:o (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    825 7vy2:o (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    826 7vy2:o (2.75) BS06 SPO N/A GO:0016020 ... N/A 35393413
    827 7vy2:p (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    828 7vy2:p (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    829 7vy2:q (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    830 7vy2:q (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    831 7vy2:q (2.75) BS06 SPO N/A GO:0016020 ... N/A 35393413
    832 7vy2:r (2.75) BS02 SPO N/A GO:0016020 ... N/A 35393413
    833 7vy2:r (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    834 7vy2:r (2.75) BS05 SPO N/A GO:0016020 ... N/A 35393413
    835 7vy2:s (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    836 7vy2:s (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    837 7vy2:s (2.75) BS04 SPO N/A GO:0016020 ... N/A 35393413
    838 7vy2:t (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    839 7vy2:t (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    840 7vy2:v (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    841 7vy2:v (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    842 7vy2:w (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    843 7vy2:w (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    844 7vy2:x (2.75) BS01 SPO N/A N/A N/A 35393413
    845 7vy2:x (2.75) BS02 SPO N/A N/A N/A 35393413
    846 7vy2:y (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    847 7vy2:y (2.75) BS02 SPO N/A GO:0016020 ... N/A 35393413
    848 7vy2:y (2.75) BS04 SPO N/A GO:0016020 ... N/A 35393413
    849 7vy2:z (2.75) BS01 SPO N/A GO:0016020 ... N/A 35393413
    850 7vy2:z (2.75) BS03 SPO N/A GO:0016020 ... N/A 35393413
    851 7vy3:A (2.63) BS02 SPO N/A GO:0016020 ... N/A 35393413
    852 7vy3:A (2.63) BS05 SPO N/A GO:0016020 ... N/A 35393413
    853 7vy3:B (2.63) BS02 SPO N/A GO:0016020 ... N/A 35393413
    854 7vy3:D (2.63) BS02 SPO N/A GO:0016020 ... N/A 35393413
    855 7vy3:D (2.63) BS03 SPO N/A GO:0016020 ... N/A 35393413
    856 7vy3:E (2.63) BS01 SPO N/A GO:0016020 ... N/A 35393413
    857 7vy3:E (2.63) BS03 SPO N/A GO:0016020 ... N/A 35393413
    858 7vy3:E (2.63) BS06 SPO N/A GO:0016020 ... N/A 35393413
    859 7vy3:F (2.63) BS01 SPO N/A GO:0016020 ... N/A 35393413
    860 7vy3:F (2.63) BS02 SPO N/A GO:0016020 ... N/A 35393413
    861 7vy3:F (2.63) BS05 SPO N/A GO:0016020 ... N/A 35393413
    862 7vy3:G (2.63) BS01 SPO N/A GO:0016020 ... N/A 35393413
    863 7vy3:G (2.63) BS03 SPO N/A GO:0016020 ... N/A 35393413
    864 7vy3:I (2.63) BS01 SPO N/A GO:0016020 ... N/A 35393413
    865 7vy3:I (2.63) BS02 SPO N/A GO:0016020 ... N/A 35393413
    866 7vy3:I (2.63) BS06 SPO N/A GO:0016020 ... N/A 35393413
    867 7vy3:J (2.63) BS01 SPO N/A GO:0016020 ... N/A 35393413
    868 7vy3:J (2.63) BS02 SPO N/A GO:0016020 ... N/A 35393413
    869 7vy3:K (2.63) BS01 SPO N/A GO:0016020 ... N/A 35393413
    870 7vy3:K (2.63) BS03 SPO N/A GO:0016020 ... N/A 35393413
    871 7vy3:K (2.63) BS04 SPO N/A GO:0016020 ... N/A 35393413
    872 7vy3:M (2.63) BS09 SPO N/A GO:0009772 ... N/A 35393413
    873 7vy3:N (2.63) BS01 SPO N/A GO:0016020 ... N/A 35393413
    874 7vy3:N (2.63) BS03 SPO N/A GO:0016020 ... N/A 35393413
    875 7vy3:O (2.63) BS01 SPO N/A GO:0016020 ... N/A 35393413
    876 7vy3:O (2.63) BS02 SPO N/A GO:0016020 ... N/A 35393413
    877 7vy3:O (2.63) BS04 SPO N/A GO:0016020 ... N/A 35393413
    878 7vy3:O (2.63) BS07 SPO N/A GO:0016020 ... N/A 35393413
    879 7vy3:P (2.63) BS01 SPO N/A GO:0016020 ... N/A 35393413
    880 7vy3:P (2.63) BS03 SPO N/A GO:0016020 ... N/A 35393413
    881 7vy3:Q (2.63) BS01 SPO N/A GO:0016020 ... N/A 35393413
    882 7vy3:Q (2.63) BS03 SPO N/A GO:0016020 ... N/A 35393413
    883 7vy3:Q (2.63) BS05 SPO N/A GO:0016020 ... N/A 35393413
    884 7vy3:R (2.63) BS01 SPO N/A GO:0016020 ... N/A 35393413
    885 7vy3:R (2.63) BS03 SPO N/A GO:0016020 ... N/A 35393413
    886 7vy3:S (2.63) BS01 SPO N/A GO:0016020 ... N/A 35393413
    887 7vy3:S (2.63) BS03 SPO N/A GO:0016020 ... N/A 35393413
    888 7vy3:S (2.63) BS06 SPO N/A GO:0016020 ... N/A 35393413
    889 7vy3:T (2.63) BS02 SPO N/A GO:0016020 ... N/A 35393413
    890 7vy3:T (2.63) BS03 SPO N/A GO:0016020 ... N/A 35393413
    891 7vy3:V (2.63) BS01 SPO N/A GO:0016020 ... N/A 35393413
    892 7vy3:V (2.63) BS03 SPO N/A GO:0016020 ... N/A 35393413
    893 7vy3:V (2.63) BS05 SPO N/A GO:0016020 ... N/A 35393413
    894 7vy3:W (2.63) BS02 SPO N/A GO:0016020 ... N/A 35393413
    895 7vy3:W (2.63) BS03 SPO N/A GO:0016020 ... N/A 35393413
    896 7vy3:X (2.63) BS01 SPO N/A N/A N/A 35393413
    897 7vy3:Y (2.63) BS02 SPO N/A GO:0016020 ... N/A 35393413
    898 7vy3:Y (2.63) BS04 SPO N/A GO:0016020 ... N/A 35393413
    899 7vy3:Z (2.63) BS02 SPO N/A GO:0016020 ... N/A 35393413
    900 7yml:A (2.6) BS04 SPO ? GO:0005886 ... P02948 36792596
    901 7yml:A (2.6) BS06 SPO ? GO:0005886 ... P02948 36792596
    902 7yml:B (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    903 7yml:D (2.6) BS02 SPO ? GO:0005886 ... P02948 36792596
    904 7yml:D (2.6) BS04 SPO ? GO:0005886 ... P02948 36792596
    905 7yml:D (2.6) BS05 SPO ? GO:0005886 ... P02948 36792596
    906 7yml:E (2.6) BS02 SPO ? GO:0005886 ... P02950 36792596
    907 7yml:E (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    908 7yml:F (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    909 7yml:F (2.6) BS02 SPO ? GO:0005886 ... P02948 36792596
    910 7yml:F (2.6) BS07 SPO ? GO:0005886 ... P02948 36792596
    911 7yml:G (2.6) BS01 SPO ? GO:0005886 ... P02950 36792596
    912 7yml:G (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    913 7yml:I (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    914 7yml:I (2.6) BS04 SPO ? GO:0005886 ... P02948 36792596
    915 7yml:I (2.6) BS05 SPO ? GO:0005886 ... P02948 36792596
    916 7yml:J (2.6) BS01 SPO ? GO:0005886 ... P02950 36792596
    917 7yml:J (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    918 7yml:K (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    919 7yml:K (2.6) BS02 SPO ? GO:0005886 ... P02948 36792596
    920 7yml:K (2.6) BS06 SPO ? GO:0005886 ... P02948 36792596
    921 7yml:M (2.6) BS08 SPO ? GO:0009772 ... P11847 36792596
    922 7yml:N (2.6) BS01 SPO ? GO:0005886 ... P02950 36792596
    923 7yml:N (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    924 7yml:O (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    925 7yml:O (2.6) BS03 SPO ? GO:0005886 ... P02948 36792596
    926 7yml:O (2.6) BS04 SPO ? GO:0005886 ... P02948 36792596
    927 7yml:P (2.6) BS02 SPO ? GO:0005886 ... P02950 36792596
    928 7yml:P (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    929 7yml:Q (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    930 7yml:Q (2.6) BS02 SPO ? GO:0005886 ... P02948 36792596
    931 7yml:Q (2.6) BS06 SPO ? GO:0005886 ... P02948 36792596
    932 7yml:R (2.6) BS01 SPO ? GO:0005886 ... P02950 36792596
    933 7yml:R (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    934 7yml:S (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    935 7yml:S (2.6) BS03 SPO ? GO:0005886 ... P02948 36792596
    936 7yml:S (2.6) BS04 SPO ? GO:0005886 ... P02948 36792596
    937 7yml:T (2.6) BS02 SPO ? GO:0005886 ... P02950 36792596
    938 7yml:T (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    939 7yml:V (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    940 7yml:V (2.6) BS02 SPO ? GO:0005886 ... P02948 36792596
    941 7yml:W (2.6) BS01 SPO ? GO:0005886 ... P02950 36792596
    942 7yml:W (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    943 7yml:X (2.6) BS03 SPO ? GO:0005886 ... P26240 36792596
    944 7yml:Y (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    945 8b64:A (2.589) BS02 SPO ? GO:0005886 ... P02950 36738736
    946 8b64:B (2.589) BS03 SPO ? GO:0005886 ... P02950 36738736
    947 8b64:B (2.589) BS04 SPO ? GO:0005886 ... P02950 36738736
    948 8b64:D (2.589) BS03 SPO ? GO:0005886 ... P02950 36738736
    949 8b64:D (2.589) BS05 SPO ? GO:0005886 ... P02950 36738736
    950 8b64:E (2.589) BS03 SPO ? GO:0005886 ... P02950 36738736
    951 8b64:E (2.589) BS04 SPO ? GO:0005886 ... P02950 36738736
    952 8b64:F (2.589) BS01 SPO ? GO:0005886 ... P02950 36738736
    953 8b64:F (2.589) BS04 SPO ? GO:0005886 ... P02950 36738736
    954 8b64:G (2.589) BS03 SPO ? GO:0005886 ... P02950 36738736
    955 8b64:G (2.589) BS04 SPO ? GO:0005886 ... P02950 36738736
    956 8b64:I (2.589) BS03 SPO ? GO:0005886 ... P02950 36738736
    957 8b64:I (2.589) BS05 SPO ? GO:0005886 ... P02950 36738736
    958 8b64:J (2.589) BS02 SPO ? GO:0005886 ... P02950 36738736
    959 8b64:J (2.589) BS03 SPO ? GO:0005886 ... P02950 36738736
    960 8b64:K (2.589) BS02 SPO ? GO:0005886 ... P02950 36738736
    961 8b64:K (2.589) BS04 SPO ? GO:0005886 ... P02950 36738736
    962 8b64:M (2.589) BS06 SPO ? GO:0009772 ... P11847 36738736
    963 8b64:N (2.589) BS03 SPO ? GO:0005886 ... P02950 36738736
    964 8b64:N (2.589) BS04 SPO ? GO:0005886 ... P02950 36738736
    965 8b64:O (2.589) BS02 SPO ? GO:0005886 ... P02950 36738736
    966 8b64:O (2.589) BS04 SPO ? GO:0005886 ... P02950 36738736
    967 8b64:R (2.589) BS02 SPO ? GO:0005886 ... P02950 36738736
    968 8b64:R (2.589) BS04 SPO ? GO:0005886 ... P02950 36738736
    969 8b64:S (2.589) BS01 SPO ? GO:0005886 ... P02950 36738736
    970 8b64:S (2.589) BS02 SPO ? GO:0005886 ... P02950 36738736
    971 8b64:T (2.589) BS02 SPO ? GO:0005886 ... P02950 36738736
    972 8b64:X (2.589) BS01 SPO ? GO:0005886 ... P26240 36738736
    973 8b64:a (2.589) BS03 SPO ? GO:0005886 ... P02948 36738736
    974 8b64:b (2.589) BS03 SPO ? GO:0005886 ... P02948 36738736
    975 8b64:b (2.589) BS04 SPO ? GO:0005886 ... P02948 36738736
    976 8b64:d (2.589) BS02 SPO ? GO:0005886 ... P02948 36738736
    977 8b64:d (2.589) BS04 SPO ? GO:0005886 ... P02948 36738736
    978 8b64:e (2.589) BS03 SPO ? GO:0005886 ... P02948 36738736
    979 8b64:e (2.589) BS04 SPO ? GO:0005886 ... P02948 36738736
    980 8b64:e (2.589) BS05 SPO ? GO:0005886 ... P02948 36738736
    981 8b64:f (2.589) BS01 SPO ? GO:0005886 ... P02948 36738736
    982 8b64:f (2.589) BS03 SPO ? GO:0005886 ... P02948 36738736
    983 8b64:f (2.589) BS05 SPO ? GO:0005886 ... P02948 36738736
    984 8b64:g (2.589) BS01 SPO ? GO:0005886 ... P02948 36738736
    985 8b64:g (2.589) BS04 SPO ? GO:0005886 ... P02948 36738736
    986 8b64:g (2.589) BS05 SPO ? GO:0005886 ... P02948 36738736
    987 8b64:i (2.589) BS03 SPO ? GO:0005886 ... P02948 36738736
    988 8b64:i (2.589) BS04 SPO ? GO:0005886 ... P02948 36738736
    989 8b64:j (2.589) BS02 SPO ? GO:0005886 ... P02948 36738736
    990 8b64:k (2.589) BS02 SPO ? GO:0005886 ... P02948 36738736
    991 8b64:k (2.589) BS04 SPO ? GO:0005886 ... P02948 36738736
    992 8b64:n (2.589) BS01 SPO ? GO:0005886 ... P02948 36738736
    993 8b64:n (2.589) BS04 SPO ? GO:0005886 ... P02948 36738736
    994 8b64:n (2.589) BS05 SPO ? GO:0005886 ... P02948 36738736
    995 8b64:o (2.589) BS03 SPO ? GO:0005886 ... P02948 36738736
    996 8b64:o (2.589) BS04 SPO ? GO:0005886 ... P02948 36738736
    997 8b64:r (2.589) BS02 SPO ? GO:0005886 ... P02948 36738736
    998 8b64:r (2.589) BS04 SPO ? GO:0005886 ... P02948 36738736
    999 8b64:s (2.589) BS01 SPO ? GO:0005886 ... P02948 36738736
    1000 8b64:s (2.589) BS04 SPO ? GO:0005886 ... P02948 36738736
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218