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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1009 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 7vnm:P (2.86) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    402 7vnm:P (2.86) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    403 7vnm:Q (2.86) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    404 7vnm:Q (2.86) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    405 7vnm:R (2.86) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    406 7vnm:R (2.86) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    407 7vnm:S (2.86) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    408 7vnm:S (2.86) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    409 7vnm:S (2.86) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    410 7vnm:T (2.86) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    411 7vnm:U (2.86) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    412 7vnm:U (2.86) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    413 7vnm:V (2.86) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    414 7vnm:W (2.86) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    415 7vnm:X (2.86) BS01 SPO ? GO:0005886 ... P13402 35418573
    416 7vny:0 (2.79) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    417 7vny:0 (2.79) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    418 7vny:1 (2.79) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    419 7vny:3 (2.79) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    420 7vny:3 (2.79) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    421 7vny:7 (2.79) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    422 7vny:7 (2.79) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    423 7vny:8 (2.79) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    424 7vny:9 (2.79) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    425 7vny:9 (2.79) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    426 7vny:9 (2.79) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    427 7vny:A (2.79) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    428 7vny:A (2.79) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    429 7vny:A (2.79) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    430 7vny:B (2.79) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    431 7vny:B (2.79) BS05 SPO ? GO:0005886 ... Q3J1A3 35418573
    432 7vny:C (2.79) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    433 7vny:D (2.79) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    434 7vny:D (2.79) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    435 7vny:D (2.79) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    436 7vny:E (2.79) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    437 7vny:F (2.79) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    438 7vny:F (2.79) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    439 7vny:F (2.79) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    440 7vny:G (2.79) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    441 7vny:G (2.79) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    442 7vny:I (2.79) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    443 7vny:I (2.79) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    444 7vny:I (2.79) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    445 7vny:J (2.79) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    446 7vny:J (2.79) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    447 7vny:K (2.79) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    448 7vny:K (2.79) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    449 7vny:K (2.79) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    450 7vny:M (2.79) BS08 SPO ? GO:0009772 ... Q3J1A6 35418573
    451 7vny:N (2.79) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    452 7vny:N (2.79) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    453 7vny:O (2.79) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    454 7vny:O (2.79) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    455 7vny:P (2.79) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    456 7vny:Q (2.79) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    457 7vny:Q (2.79) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    458 7vny:Q (2.79) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    459 7vny:R (2.79) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    460 7vny:R (2.79) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    461 7vny:S (2.79) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    462 7vny:S (2.79) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    463 7vny:S (2.79) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    464 7vny:T (2.79) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    465 7vny:T (2.79) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    466 7vny:U (2.79) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    467 7vny:U (2.79) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    468 7vny:U (2.79) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    469 7vny:V (2.79) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    470 7vny:V (2.79) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    471 7vny:W (2.79) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    472 7vny:W (2.79) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    473 7vny:W (2.79) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    474 7vny:X (2.79) BS01 SPO ? GO:0005886 ... P13402 35418573
    475 7vny:Z (2.79) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    476 7vor:0 (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    477 7vor:0 (2.74) BS05 SPO ? GO:0005886 ... Q3J1A3 35418573
    478 7vor:1 (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    479 7vor:3 (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    480 7vor:3 (2.74) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    481 7vor:5 (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    482 7vor:5 (2.74) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    483 7vor:6 (2.74) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    484 7vor:6 (2.74) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    485 7vor:7 (2.74) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    486 7vor:7 (2.74) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    487 7vor:8 (2.74) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    488 7vor:9 (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    489 7vor:9 (2.74) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    490 7vor:9 (2.74) BS06 SPO ? GO:0005886 ... Q3J1A4 35418573
    491 7vor:A (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    492 7vor:A (2.74) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    493 7vor:A (2.74) BS06 SPO ? GO:0005886 ... Q3J1A4 35418573
    494 7vor:B (2.74) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    495 7vor:B (2.74) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    496 7vor:C (2.74) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    497 7vor:C (2.74) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    498 7vor:D (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    499 7vor:D (2.74) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    500 7vor:D (2.74) BS06 SPO ? GO:0005886 ... Q3J1A4 35418573
    501 7vor:E (2.74) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    502 7vor:E (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    503 7vor:F (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    504 7vor:F (2.74) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    505 7vor:F (2.74) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    506 7vor:G (2.74) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    507 7vor:G (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    508 7vor:I (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    509 7vor:I (2.74) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    510 7vor:I (2.74) BS06 SPO ? GO:0005886 ... Q3J1A4 35418573
    511 7vor:J (2.74) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    512 7vor:J (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    513 7vor:K (2.74) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    514 7vor:M (2.74) BS09 SPO ? GO:0009772 ... Q3J1A6 35418573
    515 7vor:N (2.74) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    516 7vor:N (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    517 7vor:O (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    518 7vor:O (2.74) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    519 7vor:P (2.74) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    520 7vor:P (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    521 7vor:Q (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    522 7vor:Q (2.74) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    523 7vor:R (2.74) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    524 7vor:R (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    525 7vor:S (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    526 7vor:S (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    527 7vor:S (2.74) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    528 7vor:S (2.74) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    529 7vor:T (2.74) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    530 7vor:T (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    531 7vor:U (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    532 7vor:U (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    533 7vor:U (2.74) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    534 7vor:V (2.74) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    535 7vor:V (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    536 7vor:W (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    537 7vor:W (2.74) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    538 7vor:X (2.74) BS01 SPO ? GO:0005886 ... P13402 35418573
    539 7vor:Z (2.74) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    540 7vor:a (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    541 7vor:a (2.74) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    542 7vor:a (2.74) BS06 SPO ? GO:0005886 ... Q3J1A4 35418573
    543 7vor:b (2.74) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    544 7vor:b (2.74) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    545 7vor:b0 (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    546 7vor:b0 (2.74) BS05 SPO ? GO:0005886 ... Q3J1A3 35418573
    547 7vor:b1 (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    548 7vor:b8 (2.74) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    549 7vor:b9 (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    550 7vor:b9 (2.74) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    551 7vor:b9 (2.74) BS06 SPO ? GO:0005886 ... Q3J1A4 35418573
    552 7vor:c (2.74) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    553 7vor:c (2.74) BS04 SPO ? GO:0005886 ... Q3J1A3 35418573
    554 7vor:d (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    555 7vor:d (2.74) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    556 7vor:d (2.74) BS06 SPO ? GO:0005886 ... Q3J1A4 35418573
    557 7vor:e (2.74) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    558 7vor:e (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    559 7vor:f (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    560 7vor:f (2.74) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    561 7vor:f (2.74) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    562 7vor:g (2.74) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    563 7vor:g (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    564 7vor:i (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    565 7vor:i (2.74) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    566 7vor:i (2.74) BS06 SPO ? GO:0005886 ... Q3J1A4 35418573
    567 7vor:j (2.74) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    568 7vor:j (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    569 7vor:k (2.74) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    570 7vor:m (2.74) BS09 SPO ? GO:0009772 ... Q3J1A6 35418573
    571 7vor:n (2.74) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    572 7vor:n (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    573 7vor:o (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    574 7vor:o (2.74) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    575 7vor:p (2.74) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    576 7vor:p (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    577 7vor:q (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    578 7vor:q (2.74) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    579 7vor:r (2.74) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    580 7vor:r (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    581 7vor:s (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    582 7vor:s (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    583 7vor:s (2.74) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    584 7vor:s (2.74) BS05 SPO ? GO:0005886 ... Q3J1A4 35418573
    585 7vor:t (2.74) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    586 7vor:t (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    587 7vor:u (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    588 7vor:u (2.74) BS02 SPO ? GO:0005886 ... Q3J1A4 35418573
    589 7vor:u (2.74) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    590 7vor:v (2.74) BS01 SPO ? GO:0005886 ... Q3J1A3 35418573
    591 7vor:v (2.74) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    592 7vor:w (2.74) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    593 7vor:w (2.74) BS04 SPO ? GO:0005886 ... Q3J1A4 35418573
    594 7vor:x (2.74) BS01 SPO ? GO:0005886 ... P13402 35418573
    595 7vor:z (2.74) BS02 SPO ? GO:0005886 ... Q3J1A3 35418573
    596 7vot:0 (2.9) BS03 SPO ? GO:0005886 ... Q3J1A3 35418573
    597 7vot:0 (2.9) BS05 SPO ? GO:0005886 ... Q3J1A3 35418573
    598 7vot:1 (2.9) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    599 7vot:3 (2.9) BS01 SPO ? GO:0005886 ... Q3J1A4 35418573
    600 7vot:3 (2.9) BS03 SPO ? GO:0005886 ... Q3J1A4 35418573
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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