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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1d8c:A (2.0) BS01 SOR 2.3.3.9 GO:0000287 ... P37330 10715138
    2 1xih:A (1.7) BS01 SOR 5.3.1.5 GO:0000287 ... P24300 15299449
    3 2dxr:A (2.85) BS01 SOR 3.4.21.- GO:0005576 ... P24627 N/A
    4 2dxr:A (2.85) BS02 SOR 3.4.21.- GO:0005576 ... P24627 N/A
    5 2vft:A (1.6) BS02 SOR 1.1.3.41 GO:0003885 ... Q9ZBU1 18154360
    6 2xin:A (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1610791
    7 2xin:B (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1610791
    8 2xin:C (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1610791
    9 2xin:D (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1610791
    10 3brf:A (2.47) BS04 SOR N/A GO:0000978 ... N/A 18381292
    11 3brf:A (2.47) BS05 SOR N/A GO:0000978 ... N/A 18381292
    12 3xim:A (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1540579
    13 3xim:B (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1540579
    14 3xim:C (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1540579
    15 3xim:D (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1540579
    16 4dvo:A (2.0) BS01 SOR 5.3.1.5 GO:0000287 ... P24300 22948921
    17 4xia:A (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12070 2769749
    18 4xia:B (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12070 2769749
    19 5a06:A (1.841) BS02 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    20 5a06:A (1.841) BS03 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    21 5a06:A (1.841) BS04 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    22 5a06:A (1.841) BS05 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    23 5a06:B (1.841) BS02 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    24 5a06:B (1.841) BS03 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    25 5a06:B (1.841) BS04 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    26 5a06:C (1.841) BS02 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    27 5a06:C (1.841) BS03 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    28 5a06:D (1.841) BS02 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    29 5a06:D (1.841) BS03 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    30 5a06:D (1.841) BS04 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    31 5a06:D (1.841) BS05 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    32 5a06:E (1.841) BS02 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    33 5a06:E (1.841) BS03 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    34 5a06:F (1.841) BS02 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    35 5a06:F (1.841) BS03 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    36 5a06:F (1.841) BS04 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    37 5a06:F (1.841) BS05 SOR 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    38 5jo9:A (2.894) BS02 SOR ? GO:0016491 ... Q89FN7 27827356
    39 5k4p:A (1.318) BS04 SOR 2.7.-.- GO:0016772 ... A0A0R6L508 27655155
    40 5m6g:A (1.829) BS06 SOR 3.2.1.21 GO:0004553 ... A4FNP6 N/A
    41 5nha:A (1.8) BS03 SOR 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    42 5nha:B (1.8) BS03 SOR 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    43 5nha:C (1.8) BS03 SOR 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    44 5nha:D (1.8) BS03 SOR 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    45 5xim:A (2.6) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1610791
    46 5xim:B (2.6) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1610791
    47 5xim:C (2.6) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1610791
    48 5xim:D (2.6) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1610791
    49 6fk2:A (1.01) BS01 SOR ? GO:0030246 ... P17931 N/A
    50 6pej:A (2.0) BS01 SOR 1.1.1.14 GO:0003939 ... Q92N06 N/A
    51 6pej:B (2.0) BS01 SOR 1.1.1.14 GO:0003939 ... Q92N06 N/A
    52 6pej:C (2.0) BS01 SOR 1.1.1.14 GO:0003939 ... Q92N06 N/A
    53 6pej:D (2.0) BS01 SOR 1.1.1.14 GO:0003939 ... Q92N06 N/A
    54 6x39:A (1.7) BS01 SOR 3.1.3.48 N/A A2A8L5 35622884
    55 7wy1:B (1.6) BS04 SOR 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36519803
    56 7yw2:A (2.23) BS07 SOR 2.7.1.160 GO:0000215 ... Q8K3A2 37334830
    57 7yw2:A (2.23) BS08 SOR 2.7.1.160 GO:0000215 ... Q8K3A2 37334830
    58 8h1l:B (2.33) BS01 SOR ? GO:0005975 ... A0A7U4E834 37314406
    59 8h1l:C (2.33) BS01 SOR ? GO:0005975 ... A0A7U4E834 37314406
    60 8h1n:A (2.67) BS01 SOR ? GO:0005975 ... A0A7U4E834 37314406
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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