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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 202 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dd7:A (2.25) BS01 SO3 1.14.13.39 GO:0004517 ... P29477 10677491
    2 1eaf:A (2.6) BS01 SO3 2.3.1.12 GO:0016746 ... P10802 8471601
    3 1j3m:A (2.0) BS01 SO3 ? N/A Q84BQ8 15481054
    4 1jnz:A (2.5) BS01 SO3 1.8.99.2 GO:0000104 ... O28603 11842205
    5 1jnz:C (2.5) BS01 SO3 1.8.99.2 GO:0000104 ... O28603 11842205
    6 1jzw:A (1.76) BS02 SO3 1.20.4.1 GO:0008794 ... P08692 11709171
    7 1k0l:A (2.0) BS01 SO3 1.14.13.2 GO:0004497 ... P20586 11805318
    8 1ltd:A (2.6) BS01 SO3 1.1.2.3 GO:0016491 ... P00175 8003966
    9 1ltd:B (2.6) BS01 SO3 1.1.2.3 GO:0016491 ... P00175 8003966
    10 1okg:A (2.1) BS01 SO3 2.8.1.2 GO:0004792 ... Q7K9G0 12952945
    11 1r8s:E (1.46) BS01 SO3 ? GO:0005085 ... Q99418 14654833
    12 1tll:B (2.3) BS01 SO3 1.14.13.39 GO:0010181 ... P29476 15208315
    13 1vyb:B (1.8) BS01 SO3 2.7.7.49
    3.1.21.-
    GO:0003824 ... O00370 15274918
    14 1wmg:C (2.1) BS01 SO3 ? GO:0005042 ... Q8K1S3 17139086
    15 1wmg:D (2.1) BS01 SO3 ? GO:0005042 ... Q8K1S3 17139086
    16 1wmg:E (2.1) BS01 SO3 ? GO:0005042 ... Q8K1S3 17139086
    17 1yt8:A (1.9) BS01 SO3 2.8.1.1 GO:0004792 ... Q9I0N4 N/A
    18 2c3j:A (2.1) BS02 SO3 2.7.11.1 GO:0000077 ... O14757 16289938
    19 2cbd:A (1.67) BS02 SO3 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 1433293
    20 2d2x:A (2.3) BS04 SO3 4.2.3.124 GO:0003856 ... Q9S5E2 17879343
    21 2d2x:B (2.3) BS02 SO3 4.2.3.124 GO:0003856 ... Q9S5E2 17879343
    22 2e1d:A (2.0) BS01 SO3 2.2.1.2 GO:0004801 ... Q93092 N/A
    23 2e1d:B (2.0) BS01 SO3 2.2.1.2 GO:0004801 ... Q93092 N/A
    24 2gag:B (1.85) BS01 SO3 1.5.3.24 GO:0000166 ... Q3ZDR0 16820168
    25 2gep:A (1.9) BS01 SO3 1.8.1.2 GO:0004783 ... P17846 9315849
    26 2gru:A (2.15) BS02 SO3 4.2.3.124 GO:0003856 ... Q9S5E2 17879343
    27 2gru:B (2.15) BS02 SO3 4.2.3.124 GO:0003856 ... Q9S5E2 17879343
    28 2hci:A (1.81) BS01 SO3 ? GO:0005125 ... P78556 16820679
    29 2hci:A (1.81) BS02 SO3 ? GO:0005125 ... P78556 16820679
    30 2hz1:A (1.8) BS01 SO3 ? GO:0005344 ... P73925 17242429
    31 2v4j:A (2.1) BS05 SO3 1.8.99.3 GO:0000103 ... P45574 18829451
    32 2v4j:D (2.1) BS05 SO3 1.8.99.3 GO:0000103 ... P45574 18829451
    33 2vq2:A (1.54) BS01 SO3 ? N/A Q9JZ41 18433773
    34 2vvh:A (1.8) BS01 SO3 ? GO:0006091 ... Q5S6Z9 19017808
    35 2vvh:B (1.8) BS01 SO3 ? GO:0006091 ... Q5S6Z9 19017808
    36 2vvh:C (1.8) BS01 SO3 ? GO:0006091 ... Q5S6Z9 19017808
    37 2vvh:D (1.8) BS01 SO3 ? GO:0006091 ... Q5S6Z9 19017808
    38 2vvi:A (2.0) BS01 SO3 ? GO:0006091 ... Q5S6Z9 19017808
    39 2vvi:B (2.0) BS01 SO3 ? GO:0006091 ... Q5S6Z9 19017808
    40 2vvi:C (2.0) BS01 SO3 ? GO:0006091 ... Q5S6Z9 19017808
    41 2vvi:D (2.0) BS01 SO3 ? GO:0006091 ... Q5S6Z9 19017808
    42 2vvj:A (2.0) BS01 SO3 ? GO:0008218 ... Q5S6Z9 19017808
    43 2vvj:B (2.0) BS01 SO3 ? GO:0008218 ... Q5S6Z9 19017808
    44 2vvj:C (2.0) BS01 SO3 ? GO:0008218 ... Q5S6Z9 19017808
    45 2vvj:D (2.0) BS01 SO3 ? GO:0008218 ... Q5S6Z9 19017808
    46 2x5o:A (1.46) BS03 SO3 6.3.2.9 GO:0005515 ... P14900 20804196
    47 2xsj:A (2.5) BS05 SO3 1.8.99.3 GO:0000103 ... Q93UT1 21833321
    48 2xsj:D (2.5) BS05 SO3 1.8.99.3 GO:0000103 ... Q93UT1 21833321
    49 2xup:A (2.7) BS01 SO3 3.1.1.7 GO:0001919 ... P21836 21090615
    50 2xup:B (2.7) BS01 SO3 3.1.1.7 GO:0001919 ... P21836 21090615
    51 2y66:A (1.49) BS02 SO3 6.3.2.9 GO:0005515 ... P14900 21963114
    52 3ada:B (2.2) BS03 SO3 1.5.3.24 GO:0000166 ... Q50LF2 20675294
    53 3bnf:A (1.7) BS02 SO3 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    54 3bnj:A (1.3) BS02 SO3 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    55 3f29:A (2.0) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    56 3f29:B (2.0) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    57 3fo3:A (1.4) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    58 3fo3:B (1.4) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    59 3fo3:B (1.4) BS12 SO3 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    60 3hbp:A (2.4) BS02 SO3 1.8.3.1 GO:0005739 ... P07850 20356030
    61 3iox:A (1.8) BS01 SO3 ? N/A A8R5D9 20231452
    62 3l1t:A (2.3) BS07 SO3 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    63 3l1t:B (2.3) BS07 SO3 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    64 3l1t:B (2.3) BS08 SO3 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    65 3l1t:C (2.3) BS07 SO3 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    66 3l1t:D (2.3) BS07 SO3 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    67 3lg1:A (1.95) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    68 3lg1:B (1.95) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    69 3lgq:A (1.8) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    70 3lgq:A (1.8) BS11 SO3 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    71 3lgq:B (1.8) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    72 3lgq:B (1.8) BS11 SO3 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    73 3lgq:B (1.8) BS12 SO3 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    74 3lmv:B (2.833) BS03 SO3 3.1.1.96 GO:0000049 ... Q8IIS0 20445234
    75 3lmv:F (2.833) BS01 SO3 3.1.1.96 GO:0000049 ... Q8IIS0 20445234
    76 3lsm:A (1.7) BS02 SO3 1.1.3.10 GO:0000166 ... Q7ZA32 20708626
    77 3lsm:A (1.7) BS03 SO3 1.1.3.10 GO:0000166 ... Q7ZA32 20708626
    78 3lsm:B (1.7) BS02 SO3 1.1.3.10 GO:0000166 ... Q7ZA32 20708626
    79 3lsm:B (1.7) BS03 SO3 1.1.3.10 GO:0000166 ... Q7ZA32 20708626
    80 3mm5:A (1.8) BS04 SO3 1.8.1.22 GO:0000103 ... Q59109 20822098
    81 3mm5:D (1.8) BS04 SO3 1.8.1.22 GO:0000103 ... Q59109 20822098
    82 3nke:C (1.4) BS01 SO3 3.1.-.- GO:0003676 ... Q46896 21219465
    83 3or1:A (1.76) BS01 SO3 ? GO:0000103 ... E2QR97 N/A
    84 3or1:D (1.76) BS01 SO3 ? GO:0000103 ... E2QR97 N/A
    85 3or2:A (2.05) BS03 SO3 ? GO:0000103 ... E2QR97 N/A
    86 3or2:A (2.05) BS05 SO3 ? GO:0000103 ... E2QR97 N/A
    87 3or2:D (2.05) BS03 SO3 ? GO:0000103 ... E2QR97 N/A
    88 3or2:D (2.05) BS05 SO3 ? GO:0000103 ... E2QR97 N/A
    89 3p8u:A (2.25) BS01 SO3 ? GO:0006091 ... Q5S6Z9 22035793
    90 3p8u:B (2.25) BS01 SO3 ? GO:0006091 ... Q5S6Z9 22035793
    91 3p8u:D (2.25) BS01 SO3 ? GO:0006091 ... Q5S6Z9 22035793
    92 3tmr:A (2.0) BS01 SO3 ? GO:0006091 ... Q5S6Z9 22039963
    93 3tmr:B (2.0) BS01 SO3 ? GO:0006091 ... Q5S6Z9 22039963
    94 3tmr:C (2.0) BS01 SO3 ? GO:0006091 ... Q5S6Z9 22039963
    95 3tmr:D (2.0) BS01 SO3 ? GO:0006091 ... Q5S6Z9 22039963
    96 3ttb:A (2.0) BS09 SO3 1.7.2.2 GO:0016491 ... E7EDQ7 22935005
    97 3ttb:B (2.0) BS10 SO3 1.7.2.2 GO:0016491 ... E7EDQ7 22935005
    98 3vly:A (1.55) BS03 SO3 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    99 3vlz:A (2.07) BS03 SO3 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    100 4clw:A (2.15) BS02 SO3 4.6.1.1 GO:0009190 ... Q96PN6 24567411
    101 4cm2:A (1.8) BS01 SO3 4.6.1.1 GO:0009190 ... Q96PN6 24567411
    102 4e5k:A (1.95) BS02 SO3 1.20.1.1 GO:0005829 ... O69054 22564171
    103 4e5k:B (1.95) BS02 SO3 1.20.1.1 GO:0005829 ... O69054 22564171
    104 4e5k:C (1.95) BS02 SO3 1.20.1.1 GO:0005829 ... O69054 22564171
    105 4e5k:D (1.95) BS01 SO3 1.20.1.1 GO:0005829 ... O69054 22564171
    106 4htr:A (1.6) BS01 SO3 1.8.1.2 GO:0004783 ... P17846 23153334
    107 4kpr:E (2.4) BS01 SO3 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 N/A
    108 4ljb:A (1.9019) BS01 SO3 ? GO:0006091 ... Q5S6Z9 24059326
    109 4ljb:C (1.9019) BS01 SO3 ? GO:0006091 ... Q5S6Z9 24059326
    110 4ljc:C (1.86) BS01 SO3 ? GO:0006091 ... Q5S6Z9 24059326
    111 4ljd:A (2.5) BS01 SO3 ? GO:0006091 ... Q5S6Z9 24059326
    112 4ljd:B (2.5) BS01 SO3 ? GO:0006091 ... Q5S6Z9 24059326
    113 4ljd:C (2.5) BS01 SO3 ? GO:0006091 ... Q5S6Z9 24059326
    114 4ljd:D (2.5) BS01 SO3 ? GO:0006091 ... Q5S6Z9 24059326
    115 4pam:A (2.101) BS02 SO3 ? GO:0000287 ... P10824 25037222
    116 4pan:A (2.4) BS02 SO3 ? GO:0000287 ... P10824 25037222
    117 4q4u:A (1.62) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    118 4q4u:A (1.62) BS11 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    119 4q4u:A (1.62) BS12 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    120 4q4u:B (1.62) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    121 4q4u:B (1.62) BS11 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    122 4q5b:A (1.8) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    123 4q5b:A (1.8) BS11 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    124 4q5b:A (1.8) BS12 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    125 4q5b:B (1.8) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    126 4q5b:B (1.8) BS11 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    127 4q5c:A (1.62) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    128 4q5c:A (1.62) BS11 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    129 4q5c:A (1.62) BS12 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    130 4q5c:B (1.62) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    131 4q5c:B (1.62) BS11 SO3 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    132 4q6h:A (1.903) BS02 SO3 ? GO:0005794 ... Q9HD26 N/A
    133 4rkn:A (2.1) BS12 SO3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    134 4rkn:B (2.1) BS11 SO3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    135 4rkn:C (2.1) BS12 SO3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    136 4rkn:D (2.1) BS11 SO3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    137 4rkn:D (2.1) BS12 SO3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    138 4wqa:A (1.64) BS03 SO3 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    139 4wqb:A (1.5013) BS03 SO3 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    140 4wqe:A (1.4) BS04 SO3 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    141 5a6t:C (1.65) BS03 SO3 3.5.1.5 GO:0005737 ... P41020 26580226
    142 5b5g:A (1.5) BS01 SO3 ? GO:0009374 ... P22629 27905160
    143 5b5g:A (1.5) BS02 SO3 ? GO:0009374 ... P22629 27905160
    144 5b5g:A (1.5) BS03 SO3 ? GO:0009374 ... P22629 27905160
    145 5b5g:B (1.5) BS01 SO3 ? GO:0009374 ... P22629 27905160
    146 5b5g:B (1.5) BS02 SO3 ? GO:0009374 ... P22629 27905160
    147 5b5g:C (1.5) BS01 SO3 ? GO:0009374 ... P22629 27905160
    148 5b5g:D (1.5) BS01 SO3 ? GO:0009374 ... P22629 27905160
    149 5b5s:A (1.5) BS02 SO3 ? N/A A0A0A8IBJ8 25825334
    150 5cac:A (2.2) BS02 SO3 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 3151019
    151 5ch7:A (2.2) BS06 SO3 ? GO:0009061 ... G8QM55 26940877
    152 5ch7:C (2.2) BS05 SO3 ? GO:0009061 ... G8QM55 26940877
    153 6c1w:C (2.398) BS02 SO3 5.1.2.1 GO:0016853 ... F9USS9 29489337
    154 6gl6:A (1.8) BS02 SO3 1.18.99.1 N/A Q9FYU1 30545220
    155 6hse:A (2.3) BS02 SO3 ? GO:0003700 ... F2RGC9 30657661
    156 7c68:A (2.05) BS05 SO3 ? GO:0015768 ... Q53W80 32866452
    157 7c6f:A (1.7) BS01 SO3 ? GO:0015768 ... Q53W80 32866452
    158 7c6g:B (1.9) BS02 SO3 ? GO:0015768 ... Q53W80 32866452
    159 7c6z:A (1.63) BS01 SO3 ? GO:0015768 ... Q53W80 32866452
    160 7c6z:A (1.63) BS02 SO3 ? GO:0015768 ... Q53W80 32866452
    161 7c6z:B (1.63) BS01 SO3 ? GO:0015768 ... Q53W80 32866452
    162 7c71:A (2.1) BS01 SO3 ? GO:0015768 ... Q53W80 32866452
    163 7erp:A (2.03) BS01 SO3 ? N/A H9BVC9 35271389
    164 7erp:B (2.03) BS01 SO3 ? N/A H9BVC9 35271389
    165 7erp:C (2.03) BS01 SO3 ? N/A H9BVC9 35271389
    166 7erp:D (2.03) BS01 SO3 ? N/A H9BVC9 35271389
    167 7euw:A (1.55) BS02 SO3 ? GO:0005515 ... P05413 N/A
    168 7f6o:A (2.5) BS02 SO3 ? GO:0030288 ... Q53VZ2 34866608
    169 7f6o:B (2.5) BS02 SO3 ? GO:0030288 ... Q53VZ2 34866608
    170 7f6r:A (2.09) BS01 SO3 ? GO:0030288 ... Q53VZ2 34866608
    171 7f6r:A (2.09) BS02 SO3 ? GO:0030288 ... Q53VZ2 34866608
    172 7fag:A (1.3) BS02 SO3 3.4.21.36 GO:0004252 ... P00772 N/A
    173 7fhp:A (2.01) BS01 SO3 ? N/A L7N6B2 N/A
    174 7np8:A (2.3) BS08 SO3 1.8.98.3 GO:0016491 ... Q58280 36658338
    175 7np8:B (2.3) BS11 SO3 1.8.98.3 GO:0016491 ... Q58280 36658338
    176 7np8:C (2.3) BS10 SO3 1.8.98.3 GO:0016491 ... Q58280 36658338
    177 7np8:D (2.3) BS09 SO3 1.8.98.3 GO:0016491 ... Q58280 36658338
    178 8ezi:B (1.99) BS01 SO3 5.1.2.1 GO:0016853 ... F9USS9 37886035
    179 8g8v:A (2.03) BS01 SO3 3.5.4.16 GO:0003933 ... Q63JF5 N/A
    180 8g8v:A (2.03) BS02 SO3 3.5.4.16 GO:0003933 ... Q63JF5 N/A
    181 8g8v:B (2.03) BS01 SO3 3.5.4.16 GO:0003933 ... Q63JF5 N/A
    182 8g8v:B (2.03) BS02 SO3 3.5.4.16 GO:0003933 ... Q63JF5 N/A
    183 8g8v:B (2.03) BS03 SO3 3.5.4.16 GO:0003933 ... Q63JF5 N/A
    184 8tcc:A (3.1) BS02 SO3 N/A GO:0003933 ... A0A069BB45 N/A
    185 8x3w:A (2.01) BS03 SO3 N/A N/A O59487 39146930
    186 8x3w:A (2.01) BS04 SO3 N/A N/A O59487 39146930
    187 8x3w:A (2.01) BS05 SO3 N/A N/A O59487 39146930
    188 8x3w:B (2.01) BS01 SO3 N/A N/A O59487 39146930
    189 8x3w:B (2.01) BS03 SO3 N/A N/A O59487 39146930
    190 8x41:A (2.35) BS04 SO3 N/A N/A O59487 39146930
    191 8x41:A (2.35) BS05 SO3 N/A N/A O59487 39146930
    192 8x41:B (2.35) BS04 SO3 N/A N/A O59487 39146930
    193 8x41:B (2.35) BS05 SO3 N/A N/A O59487 39146930
    194 8x44:B (2.6) BS03 SO3 N/A N/A O59487 39146930
    195 8x45:A (2.5) BS02 SO3 N/A N/A O59487 39146930
    196 8x45:B (2.5) BS02 SO3 N/A N/A O59487 39146930
    197 8x46:B (2.2) BS02 SO3 N/A N/A O59487 39146930
    198 8x47:A (2.8) BS02 SO3 N/A N/A O59487 39146930
    199 8x4l:A (2.6) BS02 SO3 N/A N/A O59487 39146930
    200 8x4l:A (2.6) BS03 SO3 N/A N/A O59487 39146930

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218