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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dy4:A (1.9) BS01 SNP 3.2.1.91 GO:0004553 ... P62694 11114249 MOAD: Ki=44uM
    PDBbind: -logKd/Ki=4.36, Ki=44uM
    2 5fuk:A (1.55) BS02 SNP 1.11.2.1 GO:0004601 ... A0A023H437 N/A
    3 5fuk:B (1.55) BS02 SNP 1.11.2.1 GO:0004601 ... A0A023H437 N/A
    4 6ekz:A (1.08) BS03 SNP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    5 6ekz:A (1.08) BS04 SNP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    6 6ekz:A (1.08) BS05 SNP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    7 6ekz:A (1.08) BS06 SNP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    8 6ps5:A (2.9) BS01 SNP ?
    3.2.1.17    		 GO:0003796 ... D9IEF7
    P07550    		 31709066 PDBbind: -logKd/Ki=8.43, Ki=3.69nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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