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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1hq5:A (2.3) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 11258879 MOAD: Kd=2.22uM
    PDBbind: -logKd/Ki=5.65, Kd=2.22uM
    2 1hq5:B (2.3) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 11258879 MOAD: Kd=2.22uM
    3 1p8r:A (2.5) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 12820884
    4 1p8r:B (2.5) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 12820884
    5 1pq3:A (2.7) BS03 S2C 3.5.3.1 GO:0004053 ... P78540 12859189 PDBbind: -logKd/Ki=7.52, Ki=30nM
    6 1pq3:B (2.7) BS03 S2C 3.5.3.1 GO:0004053 ... P78540 12859189
    7 1pq3:C (2.7) BS03 S2C 3.5.3.1 GO:0004053 ... P78540 12859189
    8 1pq3:D (2.7) BS03 S2C 3.5.3.1 GO:0004053 ... P78540 12859189
    9 1pq3:E (2.7) BS03 S2C 3.5.3.1 GO:0004053 ... P78540 12859189
    10 1pq3:F (2.7) BS03 S2C 3.5.3.1 GO:0004053 ... P78540 12859189
    11 1wva:A (1.94) BS03 S2C 3.5.3.1 GO:0000050 ... P05089 16141327 MOAD: Kd=270nM
    PDBbind: -logKd/Ki=6.57, Kd=270nM
    12 1wva:B (1.94) BS03 S2C 3.5.3.1 GO:0000050 ... P05089 16141327 MOAD: Kd=270nM
    13 1wvb:A (2.3) BS03 S2C 3.5.3.1 GO:0000050 ... P05089 N/A
    14 1wvb:B (2.3) BS03 S2C 3.5.3.1 GO:0000050 ... P05089 N/A
    15 3e9b:A (2.15) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 19093830 MOAD: Ki=4500nM
    PDBbind: -logKd/Ki=5.35, Ki=4.5uM
    16 3e9b:B (2.15) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 19093830 MOAD: Ki=4500nM
    17 3e9b:C (2.15) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 19093830 MOAD: Ki=4500nM
    18 4iu4:A (1.8) BS03 S2C 3.5.3.1 GO:0000050 ... Q6TUJ5 23583962 MOAD: Ki~10uM
    PDBbind: -logKd/Ki=5.00, Ki~10uM
    19 4q3v:A (2.7) BS03 S2C 3.5.3.1 GO:0000050 ... Q6WVP6 25007099
    20 4q3v:B (2.7) BS03 S2C 3.5.3.1 GO:0000050 ... Q6WVP6 25007099
    21 4q3v:C (2.7) BS03 S2C 3.5.3.1 GO:0000050 ... Q6WVP6 25007099
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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