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BioLiP
Download all results in tab-seperated text for 146 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1m7i:B (2.5) BS01 RAM ? GO:0002250 ... P01801 12427018 PDBbind: -logKd/Ki=5.40, Kd=4.0uM
    2 1mfb:H (2.1) BS01 RAM N/A N/A N/A 7689495
    3 1mfb:L (2.1) BS01 RAM N/A N/A N/A 7689495
    4 1mfc:H (2.1) BS01 RAM N/A N/A N/A 7689495
    5 1tyu:A (1.8) BS01 RAM 3.2.1.- N/A P12528 8855221
    6 1tyw:A (1.8) BS01 RAM 3.2.1.- N/A P12528 8855221
    7 1tyx:A (1.8) BS01 RAM 3.2.1.- N/A P12528 8855221
    8 2e0s:A (2.15) BS01 RAM 3.4.21.- GO:0005576 ... P24627 N/A
    9 2fuq:B (2.15) BS01 RAM 4.2.2.7
    4.2.2.8    		 GO:0008201 ... C6XZB6 16565082
    10 2fv0:A (1.91) BS02 RAM 3.2.1.179 GO:0000272 ... Q9RC92 16630576
    11 2gh4:A (1.9) BS01 RAM 3.2.1.172 GO:0003824 ... O34559 16870154
    12 2jxa:A (-1.00) BS01 RAM ? GO:0030246 ... Q80TR1 N/A
    13 2vbm:A (2.0) BS01 RAM 3.2.1.- N/A Q9XJP3 18462681
    14 2x6w:A (1.35) BS02 RAM ? N/A Q9AYY6 22923442
    15 2x6y:A (1.35) BS01 RAM ? N/A Q9AYY6 22923442
    16 2x85:A (1.5) BS01 RAM ? N/A Q9AYY6 22923442
    17 2zux:A (1.32) BS11 RAM 4.2.2.23 GO:0005576 ... O31526 19193638
    18 2zux:A (1.32) BS12 RAM 4.2.2.23 GO:0005576 ... O31526 19193638
    19 2zux:A (1.32) BS13 RAM 4.2.2.23 GO:0005576 ... O31526 19193638
    20 2zux:A (1.32) BS14 RAM 4.2.2.23 GO:0005576 ... O31526 19193638
    21 2zux:B (1.32) BS11 RAM 4.2.2.23 GO:0005576 ... O31526 19193638
    22 2zux:B (1.32) BS12 RAM 4.2.2.23 GO:0005576 ... O31526 19193638
    23 2zux:B (1.32) BS13 RAM 4.2.2.23 GO:0005576 ... O31526 19193638
    24 2zx2:A (1.8) BS01 RAM ? GO:0001674 ... P86179 19524596
    25 2zx2:B (1.8) BS01 RAM ? GO:0001674 ... P86179 19524596
    26 2zx2:B (1.8) BS02 RAM ? GO:0001674 ... P86179 19524596
    27 3cg9:A (2.9) BS01 RAM ? GO:0001818 ... Q9GK12 N/A
    28 3cg9:B (2.9) BS01 RAM ? GO:0001818 ... Q9GK12 N/A
    29 3e80:C (2.35) BS01 RAM 4.2.2.7
    4.2.2.8    		 GO:0016829 ... C6XZB6 20404324
    30 3njv:A (2.4) BS04 RAM 4.2.2.23 GO:0000272 ... Q00019 20851126
    31 3nno:D (2.9) BS01 RAM ? GO:0001818 ... Q9GK12 N/A
    32 3rum:A (1.851) BS02 RAM ? GO:0005515 ... P0AEX9 22352468
    33 3th0:A (1.75) BS01 RAM 3.2.1.- N/A P12528 23292517 PDBbind: -logKd/Ki=4.12, Kd=75.8uM
    34 3w5n:A (1.8) BS02 RAM 3.2.1.40 GO:0005975 ... Q82PP4 23486481
    35 3w5n:A (1.8) BS03 RAM 3.2.1.40 GO:0005975 ... Q82PP4 23486481
    36 3w5n:A (1.8) BS04 RAM 3.2.1.40 GO:0005975 ... Q82PP4 23486481
    37 3w5n:A (1.8) BS05 RAM 3.2.1.40 GO:0005975 ... Q82PP4 23486481
    38 3w5n:A (1.8) BS06 RAM 3.2.1.40 GO:0005975 ... Q82PP4 23486481
    39 4gji:B (1.7) BS03 RAM 5.3.1.14 GO:0016853 ... Q75WH8 23772372
    40 4gji:C (1.7) BS02 RAM 5.3.1.14 GO:0016853 ... Q75WH8 23772372
    41 4gji:D (1.7) BS03 RAM 5.3.1.14 GO:0016853 ... Q75WH8 23772372
    42 4hih:A (2.0) BS01 RAM N/A N/A N/A 27183571
    43 4hih:B (2.0) BS01 RAM N/A N/A N/A 27183571
    44 4hih:C (2.0) BS01 RAM N/A N/A N/A 27183571
    45 4hih:D (2.0) BS01 RAM N/A N/A N/A 27183571
    46 4hii:A (2.3) BS02 RAM N/A N/A N/A 27183571
    47 4hii:B (2.3) BS01 RAM N/A N/A N/A 27183571
    48 4hii:C (2.3) BS01 RAM N/A N/A N/A 27183571
    49 4hii:D (2.3) BS01 RAM N/A N/A N/A 27183571
    50 4hij:B (2.1) BS01 RAM N/A N/A N/A 27183571
    51 4hij:C (2.1) BS01 RAM N/A N/A N/A 27183571
    52 4ptu:A (1.511) BS01 RAM N/A N/A N/A 27183571
    53 4urr:A (1.95) BS01 RAM 3.2.1.- N/A Q9XJP3 27045683
    54 4urr:A (1.95) BS02 RAM 3.2.1.- N/A Q9XJP3 27045683
    55 4urr:B (1.95) BS01 RAM 3.2.1.- N/A Q9XJP3 27045683
    56 4urr:B (1.95) BS02 RAM 3.2.1.- N/A Q9XJP3 27045683
    57 4urr:B (1.95) BS03 RAM 3.2.1.- N/A Q9XJP3 27045683
    58 4urr:C (1.95) BS01 RAM 3.2.1.- N/A Q9XJP3 27045683
    59 4urr:C (1.95) BS02 RAM 3.2.1.- N/A Q9XJP3 27045683
    60 4urr:C (1.95) BS03 RAM 3.2.1.- N/A Q9XJP3 27045683
    61 4urr:D (1.95) BS01 RAM 3.2.1.- N/A Q9XJP3 27045683
    62 4urr:D (1.95) BS02 RAM 3.2.1.- N/A Q9XJP3 27045683
    63 4urr:D (1.95) BS03 RAM 3.2.1.- N/A Q9XJP3 27045683
    64 4urr:D (1.95) BS04 RAM 3.2.1.- N/A Q9XJP3 27045683
    65 4urr:E (1.95) BS01 RAM 3.2.1.- N/A Q9XJP3 27045683
    66 4urr:E (1.95) BS02 RAM 3.2.1.- N/A Q9XJP3 27045683
    67 4urr:E (1.95) BS03 RAM 3.2.1.- N/A Q9XJP3 27045683
    68 4urr:F (1.95) BS01 RAM 3.2.1.- N/A Q9XJP3 27045683
    69 4urr:F (1.95) BS02 RAM 3.2.1.- N/A Q9XJP3 27045683
    70 4wzz:A (1.7) BS01 RAM ? GO:0030246 ... A9KIX1 N/A
    71 4xhc:A (2.7) BS01 RAM 3.2.1.40 GO:0005975 ... A0A0J9X262 25846411
    72 4xhc:B (2.7) BS01 RAM 3.2.1.40 GO:0005975 ... A0A0J9X262 25846411
    73 4xla:A (1.47) BS01 RAM ? N/A Q9AYY6 N/A
    74 4xlf:A (1.75) BS01 RAM ? N/A Q9AYY6 N/A
    75 4xmy:A (1.45) BS01 RAM ? N/A Q9AYY6 N/A
    76 4xn3:A (1.65) BS01 RAM ? N/A Q9AYY6 N/A
    77 4xop:A (1.59) BS01 RAM ? N/A Q9AYY6 N/A
    78 4xot:A (1.06) BS01 RAM ? N/A Q9AYY6 N/A
    79 4xr6:A (1.78) BS01 RAM ? N/A Q9AYY6 N/A
    80 4yej:A (1.4) BS01 RAM ? N/A Q9AYY6 N/A
    81 4yel:A (1.72) BS01 RAM ? N/A Q9AYY6 N/A
    82 5h4s:A (1.8) BS01 RAM ? GO:0030246 ... A0A090BWT0 28470711
    83 5h4s:A (1.8) BS02 RAM ? GO:0030246 ... A0A090BWT0 28470711
    84 5h4s:A (1.8) BS03 RAM ? GO:0030246 ... A0A090BWT0 28470711
    85 5mui:A (1.77) BS01 RAM ? N/A Q8A921 28329766
    86 5muj:A (1.37) BS01 RAM ? N/A Q8A921 28329766
    87 5mwk:A (2.0) BS01 RAM ? N/A Q8A931 28329766
    88 5mwk:A (2.0) BS03 RAM ? N/A Q8A931 28329766
    89 5olr:A (1.07) BS01 RAM 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    90 5olr:B (1.07) BS01 RAM 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    91 5olr:C (1.07) BS01 RAM 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    92 5ols:A (2.2) BS01 RAM 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    93 5ols:A (2.2) BS04 RAM 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    94 5xqg:A (2.74) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    95 5xqg:B (2.74) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    96 5xqg:C (2.74) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    97 5xqg:D (2.74) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    98 5xqg:E (2.74) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    99 5xqg:F (2.74) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    100 5xqg:G (2.74) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    101 5xqg:H (2.74) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    102 5xqj:A (2.75) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    103 5xqj:B (2.75) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    104 5xqj:C (2.75) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    105 5xqj:D (2.75) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    106 5xqj:E (2.75) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    107 5xqj:F (2.75) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    108 5xqj:G (2.75) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    109 5xqj:H (2.75) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    110 5xqo:A (3.2) BS01 RAM ? GO:0046872 ... B6H7Q7 29574769
    111 5xqo:A (3.2) BS03 RAM ? GO:0046872 ... B6H7Q7 29574769
    112 5xqo:B (3.2) BS02 RAM ? GO:0046872 ... B6H7Q7 29574769
    113 5z6b:A (1.582) BS01 RAM ? N/A O31518 N/A
    114 6f7k:A (2.1) BS01 RAM ? N/A A0A0C5PVE3 31189652
    115 6f7k:B (2.1) BS01 RAM ? N/A A0A0C5PVE3 31189652
    116 6f7k:C (2.1) BS04 RAM ? N/A A0A0C5PVE3 31189652
    117 6f7k:D (2.1) BS01 RAM ? N/A A0A0C5PVE3 31189652
    118 6f7k:F (2.1) BS01 RAM ? N/A A0A0C5PVE3 31189652
    119 6f7k:G (2.1) BS01 RAM ? N/A A0A0C5PVE3 31189652
    120 6g0x:A (1.41) BS01 RAM ? N/A Q9AYY6 30044908
    121 6gvp:A (1.71) BS01 RAM ? N/A Q9AYY6 30044908
    122 6kc2:A (2.246) BS03 RAM ? N/A E7E2M2 32112837
    123 6kc2:A (2.246) BS04 RAM ? N/A E7E2M2 32112837
    124 6zi3:A (2.08) BS03 RAM ? GO:0004497 ... Q59819 33036250
    125 6zi3:B (2.08) BS03 RAM ? GO:0004497 ... Q59819 33036250
    126 6zi3:C (2.08) BS03 RAM ? GO:0004497 ... Q59819 33036250
    127 6zi3:C (2.08) BS04 RAM ? GO:0004497 ... Q59819 33036250
    128 6zi3:D (2.08) BS03 RAM ? GO:0004497 ... Q59819 33036250
    129 6zi3:E (2.08) BS03 RAM ? GO:0004497 ... Q59819 33036250
    130 6zi7:A (2.28) BS03 RAM ? GO:0004497 ... Q59819 33036250
    131 6zi7:B (2.28) BS03 RAM ? GO:0004497 ... Q59819 33036250
    132 6zi7:D (2.28) BS03 RAM ? GO:0004497 ... Q59819 33036250
    133 7dfs:A (1.49) BS02 RAM 3.2.1.31 N/A A0A7I8AV45 33645879
    134 7dfs:A (1.49) BS04 RAM 3.2.1.31 N/A A0A7I8AV45 33645879
    135 7esm:A (1.4) BS01 RAM N/A N/A N/A 34303708
    136 7esn:A (2.42) BS02 RAM N/A N/A N/A 34303708
    137 7o0v:C (2.5) BS02 RAM ? GO:0005506 ... A0A143BHR6 35171663
    138 7yqs:A (1.25) BS03 RAM ? GO:0016829 ... A0A8D5PZ14 38382672
    139 8cse:A (2.3) BS01 RAM ? GO:0000271 ... Q6U8B0 36271007
    140 8cse:B (2.3) BS01 RAM ? GO:0000271 ... Q6U8B0 36271007
    141 8csf:A (2.4) BS01 RAM ? GO:0000271 ... Q6U8B0 36271007
    142 8csf:B (2.4) BS01 RAM ? GO:0000271 ... Q6U8B0 36271007
    143 8i4d:A (1.06) BS03 RAM 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    144 8jq4:A (1.61) BS04 RAM 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    145 8jq4:D (1.61) BS05 RAM 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    146 8two:A (2.09) BS03 RAM ? GO:0005576 ... P13835 38354245
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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