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BioLiP
Download all results in tab-seperated text for 77 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a9t:A (2.0) BS01 R1P 2.4.2.1 GO:0003824 ... P55859 9585525
    2 1rxc:A (2.35) BS02 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    3 1rxc:B (2.35) BS02 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    4 1rxc:C (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    5 1rxc:C (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    6 1rxc:D (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    7 1rxc:D (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    8 1rxc:E (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    9 1rxc:E (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    10 1rxc:F (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    11 1rxc:F (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    12 1rxc:I (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    13 1rxc:J (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    14 1rxc:K (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    15 1rxc:K (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    16 1rxc:L (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    17 1rxc:L (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    18 1tgy:A (2.2) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 N/A
    19 1tgy:A (2.2) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 N/A
    20 1tgy:B (2.2) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 N/A
    21 1tgy:B (2.2) BS02 R1P 2.4.2.3 GO:0003824 ... P12758 N/A
    22 2h4l:X (2.4) BS01 R1P 5.4.2.2
    5.4.2.8    		 GO:0000287 ... P26276 16880541
    23 3bje:A (1.44) BS01 R1P 2.4.2.- GO:0003824 ... Q57VZ2 20070944
    24 3bje:A (1.44) BS03 R1P 2.4.2.- GO:0003824 ... Q57VZ2 20070944
    25 3bje:B (1.44) BS01 R1P 2.4.2.- GO:0003824 ... Q57VZ2 20070944
    26 3bje:B (1.44) BS02 R1P 2.4.2.- GO:0003824 ... Q57VZ2 20070944
    27 3fb1:A (2.002) BS01 R1P 2.4.2.1 GO:0003824 ... Q9BMI9 21169694
    28 3fb1:B (2.002) BS01 R1P 2.4.2.1 GO:0003824 ... Q9BMI9 21169694
    29 3fb1:C (2.002) BS01 R1P 2.4.2.1 GO:0003824 ... Q9BMI9 21169694
    30 3qpb:A (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    31 3qpb:A (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    32 3qpb:B (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    33 3qpb:B (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    34 3qpb:C (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    35 3qpb:C (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    36 3qpb:D (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    37 3qpb:D (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    38 3qpb:E (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    39 3qpb:E (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    40 3qpb:F (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    41 3qpb:F (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    42 3qpb:G (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    43 3qpb:G (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    44 3qpb:H (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    45 3qpb:H (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    46 3qpb:I (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    47 3qpb:I (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    48 3qpb:J (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    49 3qpb:J (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    50 3qpb:K (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    51 3qpb:K (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    52 3qpb:L (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    53 3qpb:L (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    54 3qpb:M (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    55 3qpb:M (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    56 3qpb:N (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    57 3qpb:N (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    58 3qpb:O (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    59 3qpb:O (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    60 3qpb:P (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    61 3qpb:P (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    62 3qpb:Q (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    63 3qpb:R (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    64 3qpb:R (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    65 5ko6:A (1.42) BS02 R1P 2.4.2.1 GO:0003824 ... A0A0U3AGT1 30192840
    66 6k5h:A (2.503) BS02 R1P 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    67 6k5h:A (2.503) BS03 R1P 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    68 6k5h:B (2.503) BS02 R1P 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    69 6k5h:B (2.503) BS03 R1P 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    70 6k5h:C (2.503) BS01 R1P 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    71 6k5h:C (2.503) BS03 R1P 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    72 6k5h:D (2.503) BS01 R1P 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    73 6k5h:D (2.503) BS03 R1P 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    74 6k8p:A (1.965) BS03 R1P 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    75 6k8p:B (1.965) BS02 R1P 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    76 6k8p:C (1.965) BS03 R1P 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    77 6k8p:D (1.965) BS02 R1P 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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