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BioLiP
Download all results in tab-seperated text for 1243 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 8wql:DD (3.5) BS07 PHO N/A N/A N/A N/A
    1202 8wql:DD (3.5) BS09 PHO N/A N/A N/A N/A
    1203 8wql:DE (3.5) BS07 PHO N/A N/A N/A N/A
    1204 8wql:DE (3.5) BS09 PHO N/A N/A N/A N/A
    1205 8wql:a1 (3.5) BS06 PHO N/A N/A N/A N/A
    1206 8wql:a1 (3.5) BS08 PHO N/A N/A N/A N/A
    1207 8wql:aD (3.5) BS06 PHO N/A N/A N/A N/A
    1208 8wql:aD (3.5) BS07 PHO N/A N/A N/A N/A
    1209 8wql:aE (3.5) BS06 PHO N/A N/A N/A N/A
    1210 8wql:aE (3.5) BS07 PHO N/A N/A N/A N/A
    1211 8wql:d1 (3.5) BS03 PHO N/A N/A N/A N/A
    1212 8wql:d1 (3.5) BS07 PHO N/A N/A N/A N/A
    1213 8wql:dD (3.5) BS03 PHO N/A N/A N/A N/A
    1214 8wql:dD (3.5) BS07 PHO N/A N/A N/A N/A
    1215 8wql:dE (3.5) BS03 PHO N/A N/A N/A N/A
    1216 8wql:dE (3.5) BS07 PHO N/A N/A N/A N/A
    1217 8xlp:A (2.57) BS04 PHO N/A GO:0005506 ... A6MVT2 N/A
    1218 8xlp:A (2.57) BS12 PHO N/A GO:0005506 ... A6MVT2 N/A
    1219 8xlp:D (2.57) BS03 PHO N/A GO:0005506 ... A6MVR3 N/A
    1220 8xlp:D (2.57) BS07 PHO N/A GO:0005506 ... A6MVR3 N/A
    1221 8xlp:a (2.57) BS04 PHO N/A GO:0005506 ... A6MVT2 N/A
    1222 8xlp:a (2.57) BS12 PHO N/A GO:0005506 ... A6MVT2 N/A
    1223 8xlp:d (2.57) BS03 PHO N/A GO:0005506 ... A6MVR3 N/A
    1224 8xlp:d (2.57) BS07 PHO N/A GO:0005506 ... A6MVR3 N/A
    1225 8xr6:A (2.53) BS07 PHO N/A GO:0005506 ... A0A222AI41 N/A
    1226 8xr6:A (2.53) BS12 PHO N/A GO:0005506 ... A0A222AI41 N/A
    1227 8xr6:D (2.53) BS06 PHO N/A GO:0005506 ... A0A222AI37 N/A
    1228 8xr6:D (2.53) BS09 PHO N/A GO:0005506 ... A0A222AI37 N/A
    1229 8xr6:a (2.53) BS07 PHO N/A GO:0005506 ... A0A222AI41 N/A
    1230 8xr6:a (2.53) BS12 PHO N/A GO:0005506 ... A0A222AI41 N/A
    1231 8xr6:d (2.53) BS06 PHO N/A GO:0005506 ... A0A222AI37 N/A
    1232 8xr6:d (2.53) BS09 PHO N/A GO:0005506 ... A0A222AI37 N/A
    1233 8zee:A (2.9) BS03 PHO N/A GO:0005506 ... P07753 38890314
    1234 8zee:D (2.9) BS06 PHO N/A GO:0005506 ... P06007 38890314
    1235 8zee:D (2.9) BS07 PHO N/A GO:0005506 ... P06007 38890314
    1236 9evx:A (1.71) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 38900892
    1237 9evx:A (1.71) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 38900892
    1238 9evx:D (1.71) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    1239 9evx:D (1.71) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    1240 9evx:a (1.71) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 38900892
    1241 9evx:a (1.71) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 38900892
    1242 9evx:d (1.71) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    1243 9evx:d (1.71) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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