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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 165 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1d07:A (2.0) BS01 PDO 3.8.1.5 GO:0003824 ... D4Z2G1 11087355
    2 1iz8:A (2.0) BS03 PDO 3.8.1.5 GO:0003824 ... D4Z2G1 12939138
    3 1mr3:F (1.6) BS02 PDO ? GO:0003924 ... P19146 11535602
    4 1mr3:F (1.6) BS03 PDO ? GO:0003924 ... P19146 11535602
    5 1nai:A (2.0) BS03 PDO 5.1.3.2 GO:0003978 ... P09147 8611559
    6 1zv9:A (1.28) BS01 PDO ? GO:0000272 ... Q7WYN3 19501595
    7 2o2i:A (1.5) BS01 PDO 3.8.1.5 GO:0003824 ... P9WMR9 N/A
    8 3fnk:B (1.99) BS01 PDO ? GO:0000272 ... Q7WYN3 19501595
    9 3fnk:C (1.99) BS01 PDO ? GO:0000272 ... Q7WYN3 19501595
    10 3l8q:A (1.57) BS01 PDO ? GO:0000272 ... Q7WYN3 20394754
    11 3l8q:C (1.57) BS01 PDO ? GO:0000272 ... Q7WYN3 20394754
    12 4hon:A (1.799) BS04 PDO 1.14.11.66 N/A Q6B0I6 23219879
    13 4hon:A (1.799) BS05 PDO 1.14.11.66 N/A Q6B0I6 23219879
    14 4hon:A (1.799) BS06 PDO 1.14.11.66 N/A Q6B0I6 23219879
    15 4hon:B (1.799) BS02 PDO 1.14.11.66 N/A Q6B0I6 23219879
    16 4hon:B (1.799) BS05 PDO 1.14.11.66 N/A Q6B0I6 23219879
    17 4k1w:A (1.646) BS03 PDO 4.2.1.8 GO:0000287 ... A4XF23 N/A
    18 4k1w:B (1.646) BS03 PDO 4.2.1.8 GO:0000287 ... A4XF23 N/A
    19 4k1w:C (1.646) BS03 PDO 4.2.1.8 GO:0000287 ... A4XF23 N/A
    20 4k1w:D (1.646) BS03 PDO 4.2.1.8 GO:0000287 ... A4XF23 N/A
    21 4l1f:A (1.79) BS03 PDO ? GO:0000166 ... D2RL84 24379410
    22 4qvb:A (2.3) BS01 PDO 1.-.-.- GO:0010181 ... O06553 25644473
    23 4qvb:A (2.3) BS02 PDO 1.-.-.- GO:0010181 ... O06553 25644473
    24 4qvb:B (2.3) BS03 PDO 1.-.-.- GO:0010181 ... O06553 25644473
    25 4xz9:B (1.8) BS01 PDO 2.2.1.2 GO:0004801 ... Q9HKI3 26131847
    26 4xz9:C (1.8) BS01 PDO 2.2.1.2 GO:0004801 ... Q9HKI3 26131847
    27 4y88:A (1.45) BS01 PDO ? N/A P31997 26483485
    28 5ej0:A (1.9) BS02 PDO ? GO:0019031 ... P07240 26937025
    29 5ej0:A (1.9) BS03 PDO ? GO:0019031 ... P07240 26937025
    30 5ja8:C (2.49) BS01 PDO ? GO:0003674 ... Q9KMA6 28334932
    31 5ja8:D (2.49) BS01 PDO N/A N/A N/A 28334932
    32 5med:A (1.8) BS03 PDO 1.13.11.33 GO:0016491 ... B7JX99 28522865
    33 5med:B (1.8) BS03 PDO 1.13.11.33 GO:0016491 ... B7JX99 28522865
    34 5med:B (1.8) BS04 PDO 1.13.11.33 GO:0016491 ... B7JX99 28522865
    35 5ok0:A (2.15) BS03 PDO 5.4.2.6 GO:0000287 ... P71447 N/A
    36 5sxg:A (1.93) BS02 PDO 3.5.4.38 GO:0003824 ... Q9UH17 29234087
    37 5sxg:A (1.93) BS03 PDO 3.5.4.38 GO:0003824 ... Q9UH17 29234087
    38 5sxg:B (1.93) BS02 PDO 3.5.4.38 GO:0003824 ... Q9UH17 29234087
    39 5sxg:B (1.93) BS03 PDO 3.5.4.38 GO:0003824 ... Q9UH17 29234087
    40 6bum:A (1.51) BS02 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    41 6bum:A (1.51) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    42 6bum:A (1.51) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    43 6bum:A (1.51) BS05 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    44 6bum:A (1.51) BS06 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    45 6bum:A (1.51) BS07 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    46 6bum:A (1.51) BS08 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    47 6bum:A (1.51) BS09 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    48 6bum:B (1.51) BS02 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    49 6bum:B (1.51) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    50 6bum:B (1.51) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    51 6bum:B (1.51) BS05 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    52 6bum:B (1.51) BS06 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    53 6bum:C (1.51) BS02 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    54 6bum:C (1.51) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    55 6bum:C (1.51) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    56 6bum:C (1.51) BS05 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    57 6bum:C (1.51) BS06 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    58 6bum:C (1.51) BS07 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    59 6bum:D (1.51) BS02 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    60 6bum:D (1.51) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    61 6bum:D (1.51) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    62 6bun:A (1.78) BS02 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    63 6bun:A (1.78) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    64 6bun:A (1.78) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    65 6bun:A (1.78) BS05 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    66 6bun:A (1.78) BS07 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    67 6bun:B (1.78) BS02 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    68 6bun:B (1.78) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    69 6bun:B (1.78) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    70 6bun:C (1.78) BS02 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    71 6bun:C (1.78) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    72 6bun:C (1.78) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    73 6bun:D (1.78) BS01 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    74 6bun:D (1.78) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    75 6bun:D (1.78) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    76 6bun:D (1.78) BS05 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    77 6bun:D (1.78) BS06 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    78 6bun:D (1.78) BS07 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    79 6buo:A (1.85) BS02 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    80 6buo:A (1.85) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    81 6buo:A (1.85) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    82 6buo:A (1.85) BS05 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    83 6buo:A (1.85) BS06 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    84 6buo:A (1.85) BS07 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    85 6buo:A (1.85) BS08 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    86 6buo:B (1.85) BS02 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    87 6buo:B (1.85) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    88 6buo:B (1.85) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    89 6buo:B (1.85) BS05 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    90 6buo:B (1.85) BS06 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    91 6buo:B (1.85) BS07 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    92 6buo:B (1.85) BS08 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    93 6buo:C (1.85) BS02 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    94 6buo:C (1.85) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    95 6buo:C (1.85) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    96 6buo:C (1.85) BS05 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    97 6buo:D (1.85) BS01 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    98 6buo:D (1.85) BS02 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    99 6bup:A (1.88) BS02 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    100 6bup:A (1.88) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    101 6bup:A (1.88) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    102 6bup:B (1.88) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    103 6bup:B (1.88) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    104 6bup:B (1.88) BS05 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    105 6bup:C (1.88) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    106 6bup:C (1.88) BS05 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    107 6bup:C (1.88) BS06 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    108 6buq:A (1.88) BS02 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    109 6buq:A (1.88) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    110 6buq:B (1.88) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    111 6buq:B (1.88) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    112 6buq:B (1.88) BS05 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    113 6buq:C (1.88) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    114 6buq:C (1.88) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    115 6buq:C (1.88) BS05 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    116 6buq:D (1.88) BS01 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    117 6buq:D (1.88) BS04 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    118 6cj6:A (2.1) BS01 PDO ? N/A P24361 30429486
    119 6cj6:A (2.1) BS02 PDO ? N/A P24361 30429486
    120 6cj6:A (2.1) BS03 PDO ? N/A P24361 30429486
    121 6cj6:B (2.1) BS01 PDO ? N/A P24361 30429486
    122 6cj6:C (2.1) BS01 PDO ? N/A P24361 30429486
    123 6cj6:D (2.1) BS01 PDO ? N/A P24361 30429486
    124 6cj6:D (2.1) BS02 PDO ? N/A P24361 30429486
    125 6cwj:B (2.253) BS03 PDO 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    126 6h8x:B (1.83) BS02 PDO 5.4.2.6 GO:0000287 ... P71447 N/A
    127 6h93:A (1.77) BS02 PDO 5.4.2.6 GO:0000287 ... P71447 N/A
    128 6hdm:A (1.3) BS04 PDO 5.4.2.6 GO:0000287 ... P71447 N/A
    129 6jb0:A (1.63) BS03 PDO ? N/A Q5SLD7 31608555
    130 6ktv:A (2.2) BS03 PDO ? GO:0004792 ... B3ECE3 N/A
    131 6ohg:C (2.385) BS01 PDO N/A N/A N/A 32709983
    132 6umh:H (2.15) BS01 PDO N/A N/A N/A 32049005
    133 6umh:L (2.15) BS01 PDO N/A N/A N/A 32049005
    134 6umh:L (2.15) BS02 PDO N/A N/A N/A 32049005
    135 6umh:h (2.15) BS01 PDO N/A N/A N/A 32049005
    136 6umh:h (2.15) BS02 PDO N/A N/A N/A 32049005
    137 6vd1:B (1.32) BS04 PDO 2.5.1.6 GO:0004478 ... P17562 32057875
    138 6ydj:A (1.04) BS04 PDO 5.4.2.6 GO:0000287 ... P71447 33139716
    139 6ydm:A (2.1) BS02 PDO 5.4.2.6 GO:0000287 ... P71447 33139716
    140 7c0f:A (2.15) BS01 PDO ? GO:0015768 ... Q5SLB4 33599038
    141 7c0k:A (1.8) BS02 PDO ? GO:0015768 ... Q5SLB4 33599038
    142 7c0k:B (1.8) BS01 PDO ? GO:0015768 ... Q5SLB4 33599038
    143 7c0t:B (1.77) BS01 PDO ? GO:0015768 ... Q5SLB4 33599038
    144 7c0v:B (1.9) BS01 PDO ? GO:0015768 ... Q5SLB4 33599038
    145 7f6q:A (1.63) BS01 PDO ? GO:0030288 ... Q53VZ2 34866608
    146 7f6q:A (1.63) BS02 PDO ? GO:0030288 ... Q53VZ2 34866608
    147 7kru:A (1.82) BS01 PDO ? GO:0005524 ... P0A6Y8 34453889
    148 7p9w:A (2.0001) BS02 PDO ? GO:0042981 ... P03182 36298777
    149 7p9w:A (2.0001) BS03 PDO ? GO:0042981 ... P03182 36298777
    150 7sew:A (1.72) BS01 PDO 2.1.1.44 GO:0005886 ... P9WN47 34782676
    151 7zd1:A (1.56) BS03 PDO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    152 7zd1:C (1.56) BS04 PDO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    153 7zd1:C (1.56) BS05 PDO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    154 7zd2:B (2.16) BS03 PDO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    155 7zd2:D (2.16) BS04 PDO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    156 7zd3:C (1.9) BS04 PDO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    157 7zle:A (1.823) BS03 PDO ? GO:0003980 ... G0SB58 N/A
    158 7zle:A (1.823) BS04 PDO ? GO:0003980 ... G0SB58 N/A
    159 7zlu:A (2.049) BS03 PDO ? GO:0003980 ... G0SB58 37822503
    160 7zlu:B (2.049) BS03 PDO ? GO:0003980 ... G0SB58 37822503
    161 7zlu:C (2.049) BS03 PDO ? GO:0003980 ... G0SB58 37822503
    162 8avh:B (1.9) BS01 PDO 1.14.14.18 GO:0004392 ... Q812Q3 37371954
    163 8slv:A (2.32) BS02 PDO 3.2.1.20 GO:0005975 ... P13080 38428508
    164 8ssp:A (2.6) BS01 PDO 2.7.11.1 GO:0000212 ... O14965 37590418
    165 8u0r:D (2.3) BS01 PDO N/A N/A P68711 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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