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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ius:A (2.2) BS02 PAB 1.14.13.2 GO:0004497 ... P20586 8555229
    2 1iut:A (2.0) BS02 PAB 1.14.13.2 GO:0004497 ... P20586 8555229 MOAD: Kd=24uM
    3 1iuu:A (2.0) BS02 PAB 1.14.13.2 GO:0004497 ... P20586 8555229 MOAD: Kd=147uM
    4 1pbd:A (2.3) BS02 PAB 1.14.13.2 GO:0004497 ... P00438 7520279
    5 2dza:B (1.9) BS01 PAB 2.5.1.15 GO:0004156 ... Q5SLV2 N/A
    6 3q2a:A (1.99) BS03 PAB 1.14.13.236 GO:0004497 ... Q00456 22264099 PDBbind: -logKd/Ki=5.30, Ki~5uM
    7 3q2a:A (1.99) BS04 PAB 1.14.13.236 GO:0004497 ... Q00456 22264099 PDBbind: -logKd/Ki=5.30, Ki~5uM
    8 3q2a:A (1.99) BS05 PAB 1.14.13.236 GO:0004497 ... Q00456 22264099 PDBbind: -logKd/Ki=5.30, Ki~5uM
    9 3q2a:A (1.99) BS06 PAB 1.14.13.236 GO:0004497 ... Q00456 22264099 PDBbind: -logKd/Ki=5.30, Ki~5uM
    10 3q2a:B (1.99) BS01 PAB 1.14.13.236 GO:0004497 ... Q00460 22264099
    11 3tyz:A (2.07) BS03 PAB 2.5.1.15 GO:0004156 ... A0A2S9PLG4 22383850
    12 3tyz:B (2.07) BS03 PAB 2.5.1.15 GO:0004156 ... A0A2S9PLG4 22383850
    13 5z79:A (2.9) BS03 PAB 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    14 5z79:B (2.9) BS02 PAB 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    15 5z79:C (2.9) BS03 PAB 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    16 5z79:D (2.9) BS02 PAB 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    17 5z79:E (2.9) BS02 PAB 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    18 5z79:F (2.9) BS02 PAB 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    19 6day:A (1.65) BS01 PAB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    20 6day:A (1.65) BS02 PAB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    21 6day:B (1.65) BS01 PAB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    22 6day:B (1.65) BS02 PAB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    23 6day:B (1.65) BS03 PAB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    24 6day:B (1.65) BS04 PAB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    25 6day:C (1.65) BS01 PAB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    26 6day:C (1.65) BS02 PAB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    27 6day:D (1.65) BS01 PAB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    28 6day:D (1.65) BS02 PAB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    29 6day:D (1.65) BS03 PAB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    30 6day:D (1.65) BS04 PAB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    31 7pd5:A (1.95) BS01 PAB 2.4.1.266 GO:0000166 ... K5B7Z4 N/A
    32 7r86:A (1.65) BS02 PAB ? N/A Q99PI8 34758294
    33 7r86:B (1.65) BS02 PAB ? N/A Q99PI8 34758294
    34 7s2k:B (1.74) BS02 PAB 2.5.1.15 GO:0004156 ... P0AC11 37419898
    35 8scd:A (2.06) BS02 PAB 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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