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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1g98:A (1.9) BS01 PA5 5.3.1.9 GO:0004347 ... Q9N1E2 11327814 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    2 1g98:B (1.9) BS01 PA5 5.3.1.9 GO:0004347 ... Q9N1E2 11327814 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    3 1gzv:A (3.51) BS01 PA5 5.3.1.9 GO:0004347 ... P08059 12402366 PDBbind: -logKd/Ki=6.57, Ki=0.27uM
    4 1nuh:A (2.51) BS01 PA5 5.3.1.9 GO:0001701 ... P06744 12777791
    5 1qxr:A (1.7) BS01 PA5 5.3.1.9 GO:0004347 ... P83194 12970347
    6 1qxr:B (1.7) BS01 PA5 5.3.1.9 GO:0004347 ... P83194 12970347
    7 1tzc:A (1.45) BS01 PA5 5.3.1.8
    5.3.1.9    		 GO:0004347 ... Q8ZWV0 15252053
    8 1tzc:B (1.45) BS01 PA5 5.3.1.8
    5.3.1.9    		 GO:0004347 ... Q8ZWV0 15252053
    9 1x7n:A (1.89) BS02 PA5 5.3.1.9 GO:0004347 ... P83194 15465052
    10 1x82:A (1.5) BS01 PA5 5.3.1.9 GO:0004347 ... P83194 15465052
    11 4lta:A (2.04) BS02 PA5 5.3.1.9 GO:0004347 ... P83194 N/A
    12 4lta:B (2.04) BS02 PA5 5.3.1.9 GO:0004347 ... P83194 N/A
    13 4luk:A (1.41) BS02 PA5 5.3.1.9 GO:0004347 ... P83194 N/A
    14 6xuh:A (2.38) BS01 PA5 5.3.1.9 GO:0001701 ... P06744 32682158
    15 6xuh:C (2.38) BS01 PA5 5.3.1.9 GO:0001701 ... P06744 32682158
    16 6xui:A (1.95) BS01 PA5 5.3.1.9 GO:0001701 ... P06744 32682158
    17 6xui:B (1.95) BS01 PA5 5.3.1.9 GO:0001701 ... P06744 32682158
    18 6xui:C (1.95) BS01 PA5 5.3.1.9 GO:0001701 ... P06744 32682158
    19 6xui:D (1.95) BS01 PA5 5.3.1.9 GO:0001701 ... P06744 32682158
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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