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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 161 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1al6:A (1.85) BS01 OAA 2.3.3.1 GO:0004108 ... P23007 N/A
    2 1b8u:A (2.5) BS01 OAA 1.1.1.37 GO:0003824 ... Q9ZF99 10206992
    3 1csh:A (1.65) BS01 OAA 2.3.3.1 GO:0004108 ... P23007 8011640
    4 1csi:A (1.7) BS01 OAA 2.3.3.1 GO:0004108 ... P23007 8011640
    5 1csr:A (1.7) BS01 OAA 2.3.3.1 GO:0004108 ... P23007 7492547
    6 1css:A (1.7) BS01 OAA 2.3.3.1 GO:0004108 ... P23007 7492547
    7 1kf6:A (2.7) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    8 1kf6:M (2.7) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    9 1kfy:A (3.6) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    10 1kfy:M (3.6) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    11 1l0v:A (3.3) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    12 1l0v:M (3.3) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    13 1nas:A (2.1) BS01 OAA 1.1.1.153 GO:0004757 ... Q64105 9405351
    14 1nek:A (2.6) BS01 OAA 1.3.5.1 GO:0000104 ... P0AC41 12560550
    15 1nen:A (2.9) BS01 OAA 1.3.5.1 GO:0000104 ... P0AC41 12560550
    16 1oaa:A (1.25) BS01 OAA 1.1.1.153 GO:0004757 ... Q64105 9405351
    17 1rqe:A (2.5) BS01 OAA 2.1.3.1 GO:0003824 ... Q70AC7 15329673
    18 1sgj:A (1.84) BS01 OAA 4.1.-.- GO:0000287 ... Q9RUZ0 N/A
    19 1sgj:B (1.84) BS01 OAA 4.1.-.- GO:0000287 ... Q9RUZ0 N/A
    20 1sgj:C (1.84) BS01 OAA 4.1.-.- GO:0000287 ... Q9RUZ0 N/A
    21 2acz:A (3.1) BS01 OAA 1.3.5.1 GO:0000104 ... P0AC41 16407191
    22 2byo:A (2.15) BS06 OAA ? GO:0005319 ... P9WK65 16541102
    23 2h12:A (1.85) BS01 OAA 2.3.3.16 GO:0004108 ... P20901 17087502 MOAD: Kd=21.1uM
    24 2h12:B (1.85) BS01 OAA 2.3.3.16 GO:0004108 ... P20901 17087502 MOAD: Kd=21.1uM
    25 2h12:C (1.85) BS01 OAA 2.3.3.16 GO:0004108 ... P20901 17087502 MOAD: Kd=21.1uM
    26 2h12:D (1.85) BS01 OAA 2.3.3.16 GO:0004108 ... P20901 17087502 MOAD: Kd=21.1uM
    27 2h12:E (1.85) BS01 OAA 2.3.3.16 GO:0004108 ... P20901 17087502 MOAD: Kd=21.1uM
    28 2h12:F (1.85) BS01 OAA 2.3.3.16 GO:0004108 ... P20901 17087502 MOAD: Kd=21.1uM
    29 2ifc:A (1.7) BS01 OAA 2.3.3.16 GO:0004108 ... P21553 N/A
    30 2ifc:B (1.7) BS01 OAA 2.3.3.16 GO:0004108 ... P21553 N/A
    31 2ifc:C (1.7) BS01 OAA 2.3.3.16 GO:0004108 ... P21553 N/A
    32 2ifc:D (1.7) BS01 OAA 2.3.3.16 GO:0004108 ... P21553 N/A
    33 2pxz:X (2.23) BS02 OAA 4.1.1.49 GO:0000287 ... P22259 N/A
    34 2qf1:A (1.8) BS03 OAA 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 17685635
    35 2qf2:A (1.65) BS04 OAA 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 17685635
    36 2qf2:B (1.65) BS03 OAA 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 17685635
    37 2r26:A (2.5) BS01 OAA 2.3.3.16 GO:0004108 ... P21553 N/A
    38 2r26:B (2.5) BS01 OAA 2.3.3.16 GO:0004108 ... P21553 N/A
    39 2r26:C (2.5) BS01 OAA 2.3.3.16 GO:0004108 ... P21553 N/A
    40 2r26:D (2.5) BS01 OAA 2.3.3.16 GO:0004108 ... P21553 N/A
    41 2wqy:A (2.1) BS03 OAA 1.3.5.1 GO:0005739 ... Q9YHT1 N/A
    42 2wqy:N (2.1) BS02 OAA 1.3.5.1 GO:0005739 ... Q9YHT1 N/A
    43 3msu:A (1.843) BS01 OAA 2.3.3.16 GO:0004108 ... Q5NIJ6 N/A
    44 3msu:B (1.843) BS01 OAA 2.3.3.16 GO:0004108 ... Q5NIJ6 N/A
    45 3p4q:A (3.35) BS02 OAA 1.3.5.1 GO:0000104 ... P00363 21098488 PDBbind: -logKd/Ki=6.52, Ki=0.3uM
    46 3p4q:M (3.35) BS02 OAA 1.3.5.1 GO:0000104 ... P00363 21098488
    47 3rq1:A (2.2) BS01 OAA N/A GO:0006520 ... N/A N/A
    48 3rq1:B (2.2) BS01 OAA N/A GO:0006520 ... N/A N/A
    49 3rq1:C (2.2) BS02 OAA N/A GO:0006520 ... N/A N/A
    50 3sfd:A (2.61) BS02 OAA 1.3.5.1 GO:0005515 ... Q0QF01 21822798
    51 3sfe:A (2.81) BS02 OAA 1.3.5.1 GO:0005515 ... Q0QF01 21822798
    52 4a2l:E (2.6) BS01 OAA 2.7.13.3 N/A Q89YR8 22532667
    53 4cts:A (2.9) BS01 OAA 2.3.3.1 GO:0004108 ... P00889 6716477 PDBbind: -logKd/Ki=5.00, Kd<10uM
    54 4cts:B (2.9) BS01 OAA 2.3.3.1 GO:0004108 ... P00889 6716477 PDBbind: -logKd/Ki=5.00, Kd<10uM
    55 4hg5:A (1.91) BS01 OAA 3.5.1.128 GO:0005575 ... P47016 23897470
    56 4hg5:B (1.91) BS01 OAA 3.5.1.128 GO:0005575 ... P47016 23897470
    57 4hg5:C (1.91) BS01 OAA 3.5.1.128 GO:0005575 ... P47016 23897470
    58 4hg5:D (1.91) BS01 OAA 3.5.1.128 GO:0005575 ... P47016 23897470
    59 4jag:A (2.1) BS01 OAA 2.3.3.16 GO:0004108 ... P0ABH7 23954305
    60 4jag:B (2.1) BS01 OAA 2.3.3.16 GO:0004108 ... P0ABH7 23954305
    61 4nnb:A (2.0) BS02 OAA 4.1.3.- GO:0043720 ... C5AJX5 24616091
    62 4rkd:C (2.76) BS02 OAA 2.6.1.- GO:0003824 ... C7E5X4 25760611
    63 4rkd:E (2.76) BS02 OAA 2.6.1.- GO:0003824 ... C7E5X4 25760611
    64 4ros:A (1.95) BS01 OAA 1.1.1.37 GO:0003824 ... A9W386 N/A
    65 4tv6:A (2.6) BS01 OAA ? GO:0003824 ... A0A0H3K9Z0 25336653
    66 4tvm:A (2.6) BS01 OAA 2.3.3.16 GO:0004108 ... P9WPD5 25524525
    67 4wlo:A (2.5) BS02 OAA 1.1.1.37 GO:0003723 ... P40926 N/A
    68 4wlo:B (2.5) BS02 OAA 1.1.1.37 GO:0003723 ... P40926 N/A
    69 4wlo:C (2.5) BS02 OAA 1.1.1.37 GO:0003723 ... P40926 N/A
    70 4wlo:D (2.5) BS02 OAA 1.1.1.37 GO:0003723 ... P40926 N/A
    71 5cts:A (1.9) BS01 OAA 2.3.3.1 GO:0004108 ... P23007 2337600
    72 5fxx:A (1.99) BS02 OAA 1.14.11.68 N/A O14607 N/A
    73 5fxx:B (1.99) BS02 OAA 1.14.11.68 N/A O14607 N/A
    74 5fyv:A (1.87) BS03 OAA 1.14.11.67 N/A Q9UGL1 N/A
    75 5nqq:C (1.872) BS02 OAA 1.1.1.27 GO:0003824 ... P13491 28691704 MOAD: Ki=2.3mM
    76 5nqq:D (1.872) BS02 OAA 1.1.1.27 GO:0003824 ... P13491 28691704 MOAD: Ki=2.3mM
    77 5uqr:A (1.75) BS01 OAA 2.3.3.16
    2.3.3.5    		 GO:0004108 ... Q50I20 31141475
    78 5uqr:B (1.75) BS01 OAA 2.3.3.16
    2.3.3.5    		 GO:0004108 ... Q50I20 31141475
    79 5uqu:A (1.7) BS01 OAA 2.3.3.16
    2.3.3.5    		 GO:0004108 ... B0YD89 31141475
    80 5uzp:A (2.29) BS01 OAA 2.3.3.1 GO:0003723 ... O75390 31141475
    81 5uzp:B (2.29) BS01 OAA 2.3.3.1 GO:0003723 ... O75390 31141475
    82 5zi4:A (2.1) BS01 OAA 1.1.1.37 GO:0003729 ... P32419 30279312
    83 5zi4:B (2.1) BS01 OAA 1.1.1.37 GO:0003729 ... P32419 30279312
    84 6aby:A (2.0) BS01 OAA 2.3.3.16 GO:0004108 ... A4YGX6 30794680
    85 6aby:B (2.0) BS01 OAA 2.3.3.16 GO:0004108 ... A4YGX6 30794680
    86 6at3:A (1.455) BS01 OAA 4.1.1.49 GO:0000287 ... P22259 30376300
    87 6bol:A (2.2) BS01 OAA 2.3.3.16
    2.3.3.5    		 GO:0004108 ... B0YD89 31141475
    88 6bol:A (2.2) BS02 OAA 2.3.3.16
    2.3.3.5    		 GO:0004108 ... B0YD89 31141475
    89 6bon:B (2.35) BS02 OAA 2.3.3.16
    2.3.3.5    		 GO:0004108 ... B0YD89 31141475
    90 6bon:B (2.35) BS03 OAA 2.3.3.16
    2.3.3.5    		 GO:0004108 ... B0YD89 31141475
    91 6boo:A (2.6) BS01 OAA 2.3.3.16
    2.3.3.5    		 GO:0004108 ... B0YD89 31141475
    92 6boo:B (2.6) BS01 OAA 2.3.3.16
    2.3.3.5    		 GO:0004108 ... B0YD89 31141475
    93 6boo:D (2.6) BS01 OAA 2.3.3.16
    2.3.3.5    		 GO:0004108 ... B0YD89 31141475
    94 6myo:A (2.2) BS02 OAA 1.3.5.1 GO:0005739 ... Q9YHT1 34089891
    95 6myp:A (2.1) BS02 OAA 1.3.5.1 GO:0005739 ... Q9YHT1 34089891
    96 6myr:A (2.15) BS02 OAA 1.3.5.1 GO:0005739 ... Q9YHT1 34089891
    97 6mys:A (2.37) BS02 OAA 1.3.5.1 GO:0005739 ... Q9YHT1 34089891
    98 6myt:A (2.27) BS02 OAA 1.3.5.1 GO:0005739 ... Q9YHT1 34089891
    99 6myu:A (1.97) BS02 OAA 1.3.5.1 GO:0005739 ... Q9YHT1 34089891
    100 6s87:D (1.65) BS01 OAA 2.3.3.16 GO:0004108 ... Q9I5E3 N/A
    101 6ui9:A (3.1) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 31873304
    102 6ui9:A (3.1) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 31873304
    103 6ui9:B (3.1) BS01 OAA 2.3.3.8 GO:0003824 ... P53396 31873304
    104 6ui9:B (3.1) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 31873304
    105 6ui9:C (3.1) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 31873304
    106 6ui9:C (3.1) BS04 OAA 2.3.3.8 GO:0003824 ... P53396 31873304
    107 6ui9:D (3.1) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 31873304
    108 6uv5:A (3.4) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 31873304
    109 6uv5:A (3.4) BS04 OAA 2.3.3.8 GO:0003824 ... P53396 31873304
    110 6uv5:B (3.4) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 31873304
    111 6uv5:C (3.4) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 31873304
    112 6uv5:D (3.4) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 31873304
    113 6uv5:D (3.4) BS04 OAA 2.3.3.8 GO:0003824 ... P53396 31873304
    114 6vax:A (2.59) BS02 OAA 1.3.5.1 GO:0005515 ... P31040 32887801
    115 6vax:C (2.59) BS02 OAA 1.3.5.1 GO:0005515 ... P31040 32887801
    116 6vef:A (4.08) BS02 OAA 1.2.4.2 GO:0000166 ... P0AFG3 N/A
    117 6vef:A (4.08) BS03 OAA 1.2.4.2 GO:0000166 ... P0AFG3 N/A
    118 6vef:B (4.08) BS01 OAA 1.2.4.2 GO:0000166 ... P0AFG3 N/A
    119 6vef:B (4.08) BS02 OAA 1.2.4.2 GO:0000166 ... P0AFG3 N/A
    120 6z2h:A (1.8) BS02 OAA 2.3.3.8 GO:0046912 ... P53396 34294920
    121 6z2h:C (1.8) BS02 OAA 2.3.3.8 GO:0046912 ... P53396 34294920
    122 7by9:A (2.2) BS02 OAA 1.1.1.37 GO:0000166 ... A0A143T1U9 33723609
    123 7by9:C (2.2) BS02 OAA 1.1.1.37 GO:0000166 ... A0A143T1U9 33723609
    124 7by9:D (2.2) BS02 OAA 1.1.1.37 GO:0000166 ... A0A143T1U9 33723609
    125 7bya:D (2.2) BS02 OAA 1.1.1.37 GO:0000166 ... A0A143T1U9 33723609
    126 7lj9:A (3.0) BS01 OAA 2.3.3.8 GO:0003824 ... P53396 34294921
    127 7lj9:B (3.0) BS01 OAA 2.3.3.8 GO:0003824 ... P53396 34294921
    128 7lj9:C (3.0) BS01 OAA 2.3.3.8 GO:0003824 ... P53396 34294921
    129 7lj9:D (3.0) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 34294921
    130 7lla:A (2.97) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 34294921
    131 7lla:A (2.97) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 34294921
    132 7lla:B (2.97) BS01 OAA 2.3.3.8 GO:0003824 ... P53396 34294921
    133 7lla:B (2.97) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 34294921
    134 7lla:C (2.97) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 34294921
    135 7lla:C (2.97) BS04 OAA 2.3.3.8 GO:0003824 ... P53396 34294921
    136 7lla:D (2.97) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 34294921
    137 7lla:D (2.97) BS04 OAA 2.3.3.8 GO:0003824 ... P53396 34294921
    138 7r1k:A (1.5) BS01 OAA ? GO:0016042 ... W8FKE7 N/A
    139 7zyz:A (2.47) BS02 OAA N/A GO:0003824 ... N/A 36261450
    140 7zz1:A (2.27) BS03 OAA N/A GO:0003824 ... N/A 36261450
    141 8g1e:A (2.8) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    142 8g1e:C (2.8) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    143 8g1e:D (2.8) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    144 8g1f:A (2.4) BS04 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    145 8g1f:B (2.4) BS05 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    146 8g1f:C (2.4) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    147 8g1f:D (2.4) BS04 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    148 8g5d:A (2.5) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    149 8g5d:B (2.5) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    150 8g5d:C (2.5) BS02 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    151 8g5d:D (2.5) BS03 OAA 2.3.3.8 GO:0003824 ... P53396 37076498
    152 8gr9:A (1.48) BS02 OAA 2.3.3.16 GO:0004108 ... P08679 37058555
    153 8kib:A (1.7) BS02 OAA N/A N/A O88844 N/A
    154 8kib:A (1.7) BS04 OAA N/A N/A O88844 N/A
    155 8kib:A (1.7) BS05 OAA N/A N/A O88844 N/A
    156 8kib:B (1.7) BS02 OAA N/A N/A O88844 N/A
    157 8kib:B (1.7) BS04 OAA N/A N/A O88844 N/A
    158 8kib:C (1.7) BS02 OAA N/A N/A O88844 N/A
    159 8kib:C (1.7) BS03 OAA N/A N/A O88844 N/A
    160 8kib:D (1.7) BS02 OAA N/A N/A O88844 N/A
    161 8kib:D (1.7) BS03 OAA N/A N/A O88844 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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